mRNA_H-elongata_contig137811.2656.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig137811.2656.1
Unique NamemRNA_H-elongata_contig137811.2656.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
BLAST of mRNA_H-elongata_contig137811.2656.1 vs. uniprot
Match: D8LRA8_ECTSI (tRNA pseudouridine(55) synthase n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LRA8_ECTSI)

HSP 1 Score: 423 bits (1087), Expect = 4.130e-140
Identity = 259/478 (54.18%), Postives = 307/478 (64.23%), Query Frame = 1
Query:    1 AGTATSPTVISVKEALKLGLAEGLHSRLGD-------------SGVVID-PDSDFVVEVTAKAPEADAHAKALLLGESFQPPSGRKKQP-GWP-GSGRWSKKRQRREEHRNQGLTVGAVKKGLLDLDGEGRARMRRWVKSL-EAGRQGGNEKPQALKNHGDTEGNVRRLERESDEVEGVSCMNENMDVDTTDVENGLEDKNESGKSKNHLMKEESISGSVS---------VEYTAQSSIV------PASNTNDLNSGSDVRVPFQAYCDIAIRRLPIHFWGRYTKLSRVVPQTPWVKGFFSVQEAVSEPFEEFSGSIEALLHGSGREDVDVRMLGNGRPFSLELVDSLRSVDEITVALPALQKAVNSGVGQRNAGGGVAVSELRVAGPGDLPSDVQRVGEGKRKHYRCVVWVSRAVGDKELKRTLCNRP--ELVVQQATPVRVLHRRTLMDRPRSIFDMRVDWLNDHFFVLNLTTSAG 1332
            AG  +   V+ VKEALK+GLA  L + L               + V +D  DSDF+VEVTA+APEADAHA   LLG      SG  K P GWP G GRW+KKRQRRE+ RN GLTVGAVKKGL ++D  GR RMRRWV+ L E  R GG  +       G  E  V  +   +              V   D     E K+ +G++ + +     +SG+V+             A++ +V      P S T    S        +A C++AIRR PIHFWGRYTKLSR VPQTPW KGF+SVQEAVSEPF+ FSG +E LLHG+GREDVDVRMLG GRPF LELVDSLRSVDEI   LP+L  AVN+  G +NAGGGVAVS L+V+GPG+LPSDVQ VGEGKRKHYRCVVWVSR VG +EL + LC     ELVVQQATP+RVLHRRTL+DRPRSIF MR +W+N+HFF L L TSAG
Sbjct:   77 AGQISRQAVVPVKEALKIGLAHVLKAHLQTRQEEAAAVAAVTAAVVTVDHQDSDFMVEVTARAPEADAHAATALLGGPAPSRSGAGKPPRGWPAGGGRWAKKRQRREQQRNPGLTVGAVKKGLNEMDDAGRERMRRWVQGLIEERRTGGGIE------EGIEEEPVASIGGATRAXXXXXXXXXXXVVGGGDGVVDAEPKDSTGQAVDGVTP---VSGTVAGGDAREGSPAAIPAEAPVVRAAGPPPPSATPSDASTHPTSAGAEALCEVAIRRKPIHFWGRYTKLSRSVPQTPWFKGFYSVQEAVSEPFQAFSGCVEGLLHGAGREDVDVRMLGKGRPFCLELVDSLRSVDEIAARLPSLADAVNTAGGVKNAGGGVAVSRLQVSGPGELPSDVQAVGEGKRKHYRCVVWVSRPVGKEELVKALCEDAPEELVVQQATPIRVLHRRTLLDRPRSIFGMRAEWINEHFFQLELATSAG 545          
BLAST of mRNA_H-elongata_contig137811.2656.1 vs. uniprot
Match: A0A6H5KZN5_9PHAE (tRNA pseudouridine(55) synthase n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KZN5_9PHAE)

HSP 1 Score: 422 bits (1086), Expect = 2.240e-137
Identity = 258/467 (55.25%), Postives = 304/467 (65.10%), Query Frame = 1
Query:    1 AGTATSPTVISVKEALKLGLAEGLHSRL-------------GDSGVVID-PDSDFVVEVTAKAPEADAHAKALLLGESFQPPSGRKKQP-GWP-GSGRWSKKRQRREEHRNQGLTVGAVKKGLLDLDGEGRARMRRWVKSL-EAGRQGGNEKPQALKNHGDTEGNVRRLE--RESDEVEGVSCMNENMDVDTT-DVENGLEDKNESGKSKNHLMKEESISGS-VSVEYTAQSSIVPASNTNDLNSGSDVRVPFQAYCDIAIRRLPIHFWGRYTKLSRVVPQTPWVKGFFSVQEAVSEPFEEFSGSIEALLHGSGREDVDVRMLGNGRPFSLELVDSLRSVDEITVALPALQKAVNSGVGQRNAGGGVAVSELRVAGPGDLPSDVQRVGEGKRKHYRCVVWVSRAVGDKELKRTLCNRP--ELVVQQATPVRVLHRRTLMDRPRSIFDMRVDWLNDHFFVLNLTTSAG 1332
            AG  +   V+ VKEALK+GLA  L + L               + V +D  DSDF+VEVTA+APEADAHA   LLG      SG  K P GWP G GRW+KKRQRREE RN GLTVGAVKKGL ++D  GR RMRRWV+ L +  R GG  +   + + G   G        R ++ V G   + +    D+T    +G+     SG       +E S + +         + + P S T    S        +A C++AIRR  IHFWGRYTKLSR VPQTPW KGF+SVQEAVSEPF+ FSG +E LLHG+GREDVDVRMLG GRPF LELVDSLRSVDEI   LP+L  AVN+  G +N GGGVAVS LRVAGPG+LPSDVQ VGEGKRKHYRCVVWVSR VG +EL + LC     ELVVQQATP+RVLHRRTL+DRPRSIF MR +W+N+HFF L L TSAG
Sbjct:  287 AGQISRQAVVPVKEALKIGLARTLRAHLQTRQEAAAAVXXXXXAVVTVDHQDSDFMVEVTARAPEADAHAATALLGGPAPSHSGAGKPPRGWPAGGGRWAKKRQRREEQRNPGLTVGAVKKGLNEMDDAGRERMRRWVQGLIQERRTGGEIEEVPVASLGGITGAADSSSGGRAAEVVRGGDGVVDAEPKDSTGQAVDGVTPV--SGTVVGGDAREGSPAAAPAEAPVVRAAGVPPPSATPSDASIHPTSGGAEALCEVAIRRKSIHFWGRYTKLSRSVPQTPWFKGFYSVQEAVSEPFQAFSGCVEGLLHGAGREDVDVRMLGKGRPFCLELVDSLRSVDEIAARLPSLADAVNTAGGVKNVGGGVAVSRLRVAGPGELPSDVQAVGEGKRKHYRCVVWVSRPVGKEELVKALCEDAPEELVVQQATPIRVLHRRTLLDRPRSIFGMRAEWINEHFFQLELATSAG 751          
BLAST of mRNA_H-elongata_contig137811.2656.1 vs. uniprot
Match: A0A836CNG6_9STRA (tRNA pseudouridine(55) synthase n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CNG6_9STRA)

HSP 1 Score: 182 bits (463), Expect = 3.040e-47
Identity = 106/221 (47.96%), Postives = 137/221 (61.99%), Query Frame = 1
Query:  706 CDIAIRRLPIHFWGRYTKLSRVVPQTPWVKGF---------FSVQEAVSEPFEEFSGSIEALLHGSGREDVDVRMLGNGRPFSLELVDSLRSVDEITVALPALQKAVNSGVGQRNAGGGVAVSELRVAGPGDLPSDVQRVGEGKRKHYRCVVWVSRAVGDKELKRTLCNRP---ELVVQQATPVRVLHRRTLMDRPRSIFDMRVDWLNDHFFVLNLTTSAG 1332
            C  A+ R P + +GRY KLSR VPQ+PW  G           SVQE V+ P E  +   E  L G+GRED+DVRMLGNGRPF LE++DS  +  ++  ALP LQ+ VN+  G  N+ G V VS+ ++ G  D+ S +Q   EGKRKHYRCVVW SR V   EL   L   P   +L V+Q+TPVRVLHRR  + R +++  +R   +   FFVL+LTTSAG
Sbjct:  417 CAAALERQPQYVFGRYRKLSRSVPQSPWTVGRGADAVRIGDASVQEIVAAPLEALARCREVKLAGAGREDMDVRMLGNGRPFVLEVIDSKVTAQQLADALPRLQREVNACTGL-NSEGAVEVSDFKLVGR-DIYSQIQEGAEGKRKHYRCVVWTSRDVSQAELDAALHAHPPGADLEVRQSTPVRVLHRRAALTRVKTVRALRAARVAPRFFVLSLTTSAG 635          
BLAST of mRNA_H-elongata_contig137811.2656.1 vs. uniprot
Match: A0A8J5Y2V0_DIALT (tRNA pseudouridine(55) synthase n=1 Tax=Diacronema lutheri TaxID=2081491 RepID=A0A8J5Y2V0_DIALT)

HSP 1 Score: 152 bits (384), Expect = 2.300e-37
Identity = 90/219 (41.10%), Postives = 127/219 (57.99%), Query Frame = 1
Query:  706 CDIAIR--RLPIHFWGRYTKLSRVVPQTPW-----VKGFFSVQEAVSEPFEEFSGSIEALLHGSGREDVDVRMLGNGRPFSLELVDS--LRSVDEITVALPALQKAVNSGVGQRNAGGGVAVSELRVAGPGDLPSDVQRVGEGK-RKHYRCVVWVSRAVGDKELKRTLCNRPELVVQQATPVRVLHRRTLMDRPRSIFDMRVDWLNDHFFVLNLTTSAG 1332
            C  ++R    P+   GRY K SR +PQTPW      +G  SVQE +    +    +   + HG+GREDVDVRMLG+GRPF +E+ +   L     +   L  L+ A+N       A   V VS+LRV  P     D+ R GE + RK YRCVVW+SR V  +E+   L    E++++Q TP+RVLHRR L+ RPR+++ MR + LN H+ +L+L T +G
Sbjct:  241 CSASLRASHAPVCIGGRYNKYSREMPQTPWWLDNEKRGISSVQEELQTVLQPAYAASATVFHGAGREDVDVRMLGSGRPFVIEMQEPACLEPGTAVGTPLAELEAAINL------ASEHVQVSQLRVV-PSSSIGDLVREGESEHRKAYRCVVWLSRRVSAREVADKLDGAGEVLLEQRTPIRVLHRRPLLTRPRTVYSMRSELLNGHYLMLDLVTQSG 452          
BLAST of mRNA_H-elongata_contig137811.2656.1 vs. uniprot
Match: A0A5A8CYU0_CAFRO (tRNA pseudouridine(55) synthase n=3 Tax=Cafeteria roenbergensis TaxID=33653 RepID=A0A5A8CYU0_CAFRO)

HSP 1 Score: 145 bits (365), Expect = 8.720e-36
Identity = 93/213 (43.66%), Postives = 125/213 (58.69%), Query Frame = 1
Query:  712 IAIRRLPIHFWGRYTKLSRVVPQTPW----VKGFF-SVQEAVSEPFEEFSGSIEALLHGSGREDVDVRMLGNGRPFSLELVDS-LRSVDEITVALPALQKAVNSGVGQRNAGGGVAVSELRVAGPGDLPSDVQRVGEGKRKHYRCVVWVSRAVGDKELKRTLCNRPELVVQQATPVRVLHRRTLMDRPRSIFDMRVDWLNDHFFVLNLTTSAG 1332
            +A+RR  +   GRY+K +R V QT W     +G + SV+E  ++      G+ ++ LHGSGREDVDVRMLG GRPF LEL    + SV +  +   A++  +N       +  GV V+ELR+A   D+ +     G+ KRK Y  +V    AV  + L+  L    EL V Q TPVRVLHRR+LMDRP+ I  MR  W+N H+FVL L TSAG
Sbjct:   67 VAVRRESLFVRGRYSKTARGVSQTAWRLEGQEGLYRSVEEVAADHLAPLFGAADSRLHGSGREDVDVRMLGGGRPFVLELKQPRISSVSQAAIDQAAMR--IN------RSPEGVTVTELRLATTSDVDAVTAGAGD-KRKEYAALVRCRAAVTPEFLRERLDAVKELAVCQTTPVRVLHRRSLMDRPKVIHGMRTRWVNAHWFVLRLVTSAG 270          
BLAST of mRNA_H-elongata_contig137811.2656.1 vs. uniprot
Match: A0A0D2WJ29_CAPO3 (tRNA pseudouridine(55) synthase n=2 Tax=Capsaspora owczarzaki (strain ATCC 30864) TaxID=595528 RepID=A0A0D2WJ29_CAPO3)

HSP 1 Score: 147 bits (370), Expect = 9.830e-35
Identity = 91/209 (43.54%), Postives = 125/209 (59.81%), Query Frame = 1
Query:  724 RLPIHFWGRYTKLSRVVPQTPWV-----KGFFSVQEAVSEPFEEFSGSIEALLHGSGREDVDVRMLGNGRPFSLELVDSLRSVDEITV-ALPALQKAVNSGVGQRNAGGGVAVSELRVAGPGDLPSDVQRVGEGKRKHYRCVVWVSRAVGDKELKRTLCNRPELVVQQATPVRVLHRRTLMDRPRSIFDMRVDWLNDHFFVLNLTTSAG 1332
            R PI   GRY K SRVV Q+P++     KG  SV E ++ P   + G+ E  L  SGRED+DVRMLG GRPF LE+ D+ RS   +T   L  LQ  VN       AGG V + +L VA   D+P+ +    + K+K Y  V+WVSR +  +++   L    E+VVQQ TP+RV+HRR +  RPRS++ MR   +N+H+ +L L+T AG
Sbjct:  392 RDPIFIGGRYNKYSRVVSQSPYIVGEERKGDTSVHELIAAPMLAYCGASEIKLSSSGREDMDVRMLGRGRPFVLEIADARRS--SLTPDKLAHLQALVNDA-----AGGRVHIRDLIVAQRADIPA-LNEGEDDKKKLYGAVIWVSRPITAEDIA-ALTRPEEMVVQQMTPLRVMHRRAICTRPRSVYWMRAHQINEHYLLLCLSTQAG 591          
BLAST of mRNA_H-elongata_contig137811.2656.1 vs. uniprot
Match: A0A7S2WQC3_9STRA (tRNA pseudouridine(55) synthase n=1 Tax=Rhizochromulina marina TaxID=1034831 RepID=A0A7S2WQC3_9STRA)

HSP 1 Score: 138 bits (348), Expect = 9.750e-34
Identity = 81/215 (37.67%), Postives = 123/215 (57.21%), Query Frame = 1
Query:  709 DIAIR--RLPIHFWGRYTKLSRVVPQTPWV-----KGFFSVQEAVSEPFEEFSGSIEALLHGSGREDVDVRMLGNGRPFSLELVDSLRSVDEITVALPALQKAVNSGVGQRNAGGGVAVSELRVAGPGDLPSDVQRVGEGKRKHYRCVVWVSRAVGDKELKRTLCNRPELVVQQATPVRVLHRRTLMDRPRSIFDMRVDWLNDHFFVLNLTTSAG 1332
            D+AI+  R P+   GRY KL+R VPQ+PW      KG  SV+E +    +   G+ E     +GRED+DVRMLG+GRPF +E++   R       A+  + +++NS +   N    V V  L+   P  +  ++      K+K YRC+VWVS+ V  ++L+  L +  +L V Q TP+RV+HRR+ M R + I  +R  W+N H+F L++  SAG
Sbjct:   58 DMAIKWVRQPLFLGGRYRKLARDVPQSPWFIDGQRKGRGSVEECLGHAIQAAFGADEVKFQAAGREDIDVRMLGHGRPFLVEVLQPRRLT--ALSAVDQIMRSINSDMTGPNKDQDVEVEALQWV-PRSVEKEMHDGAADKKKGYRCMVWVSKPVTPQDLEARLDSVADLKVAQDTPIRVVHRRSPMIRDKMIHSLRTSWINSHWFQLDVVASAG 269          
BLAST of mRNA_H-elongata_contig137811.2656.1 vs. uniprot
Match: A0A7S1A4R1_NOCSC (tRNA pseudouridine(55) synthase n=1 Tax=Noctiluca scintillans TaxID=2966 RepID=A0A7S1A4R1_NOCSC)

HSP 1 Score: 141 bits (356), Expect = 1.290e-33
Identity = 85/217 (39.17%), Postives = 122/217 (56.22%), Query Frame = 1
Query:  697 QAYCDIAIRRLPIHFWGRYTKLSRVVPQTPWV-----KGFFSVQEAVSEPFEEFSGSIEALLHGSGREDVDVRMLGNGRPFSLELVDSLRSVDEITVALPALQKAVNSGVGQRNAGGGVAVSELRVAGPGDLPSDVQRVGEGKRKHYRCVVWVSRAVGDKELKRTLCNRPELVVQQATPVRVLHRRTLMDRPRSIFDMRVDWLNDHFFVLNLTTSAG 1332
            Q+   +A+ R  I+  GRY KL R +PQ  WV     +G  SV+E V+EP  +  G+    +H  GRED+DVRMLG GR F +E+ D+ R+    T++   ++ AVN   G       + +S L    P  + S +Q   E  RK Y CV W  RA+ + +L  TL N  ++ V Q TP+RVLHRRT   RPR++  M+   +NDH+F L ++T AG
Sbjct:  224 QSKVAVALGRSAIYLVGRYLKLQRGIPQAKWVVDDERRGDTSVEELVTEPIAKQFGASSCGMHAEGREDIDVRMLGQGRTFVVEVRDAERT----TLSCAGVESAVNVACGDA-----LKISGLERCDPSRM-SSLQAHAEAHRKTYVCVCWSQRALAEADLV-TLSNMTDIEVAQQTPLRVLHRRTQATRPRTVHWMKATRINDHYFTLRVSTQAG 429          
BLAST of mRNA_H-elongata_contig137811.2656.1 vs. uniprot
Match: A0A8K1C5Y9_PYTOL (Uncharacterized protein n=1 Tax=Pythium oligandrum TaxID=41045 RepID=A0A8K1C5Y9_PYTOL)

HSP 1 Score: 139 bits (351), Expect = 1.140e-32
Identity = 95/225 (42.22%), Postives = 127/225 (56.44%), Query Frame = 1
Query:  697 QAYCDIAIRRLPIHFWGRYTKLSRVVPQTPWV-----KGFFSVQEAVSE---PFEEFSGSIEALLHGSGREDVDVRMLGNGRPFSLELVDSLRSVDEITVA-LPALQKAVNSGVGQRNAGGGVAVSELRVAGPGDLPSDVQRVGEGKRKHYRCVVWVSRAVGDKELKRTLCNR----PELVVQQATPVRVLHRRTLMDRPRSIFDMRVDWLNDHFFVLNLTTSAG 1332
            Q  C + + R P++  GRY K  R + QTPWV      G  SV+E + E   PF + SG      H +GREDVDVRMLGNGRPF LE++D+ +S  ++T A    LQ AVN+        G V + E++ A   +    +Q   + KRK Y CVVW      +KEL   L  +     +L +QQ TP+RVLHRRTLM RP+ I   + + LN H+ +L LTTSAG
Sbjct:  264 QPTCGVVLERDPVYIQGRYLKYKRGLSQTPWVLDGVRMGDSSVEECIGEVGLPFFKGSGY---KFHTAGREDVDVRMLGNGRPFILEILDAKKS--KLTPAEYEQLQAAVNT-----THQGAVEIREVK-ASTKEYFGKLQAGADSKRKTYCCVVW-----SEKELTPDLVAKLDAIHDLTIQQQTPIRVLHRRTLMTRPKVIHATKCEVLNKHYMLLRLTTSAG 472          
BLAST of mRNA_H-elongata_contig137811.2656.1 vs. uniprot
Match: A0A067D9A4_SAPPC (tRNA pseudouridine(55) synthase n=2 Tax=Saprolegnia TaxID=4769 RepID=A0A067D9A4_SAPPC)

HSP 1 Score: 139 bits (349), Expect = 1.710e-32
Identity = 91/223 (40.81%), Postives = 120/223 (53.81%), Query Frame = 1
Query:  685 RVPFQAYCDIAIRRLPIHFWGRYTKLSRVVPQTPWV-----KGFFSVQEAVSEPFEEFSGSIEALLHGSGREDVDVRMLGNGRPFSLELVDSLRSV--DEITVALPALQKAVNSGVGQRNAGGGVAVSELRVAGPGDLPSDVQRVGEGKRKHYRCVVWVSRAVGDKELKRTLCNRPELVVQQATPVRVLHRRTLMDRPRSIFDMRVDWLNDHFFVLNLTTSAG 1332
            R    A   +++ R P++  GRY K  R + QTPWV      G  SV+EA+ +      G+     H +GREDVDVRMLGNGRPF LEL+D+  +    ++   + A   A N+ +        V + EL  A      + +Q   + KRK Y CVVW S  V   E    L    +L V Q TPVRVLHRRTL+ RP+ I D  V+ LNDH+ +L LTTSAG
Sbjct:  230 RAQSAASISVSVERAPVYVAGRYLKFMRGLSQTPWVLDGERMGDSSVEEAIGDIISPVFGAKSYKFHTAGREDVDVRMLGNGRPFILELLDAKVATLPADMYATVQAQVNAANTDI--------VEIRELSSATKEGFAA-LQSGADSKRKTYCCVVWTS-GVLTPERVAILNGICDLRVGQKTPVRVLHRRTLLTRPKVIHDASVELLNDHYMLLRLTTSAG 442          
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig137811.2656.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D8LRA8_ECTSI4.130e-14054.18tRNA pseudouridine(55) synthase n=1 Tax=Ectocarpus... [more]
A0A6H5KZN5_9PHAE2.240e-13755.25tRNA pseudouridine(55) synthase n=1 Tax=Ectocarpus... [more]
A0A836CNG6_9STRA3.040e-4747.96tRNA pseudouridine(55) synthase n=1 Tax=Tribonema ... [more]
A0A8J5Y2V0_DIALT2.300e-3741.10tRNA pseudouridine(55) synthase n=1 Tax=Diacronema... [more]
A0A5A8CYU0_CAFRO8.720e-3643.66tRNA pseudouridine(55) synthase n=3 Tax=Cafeteria ... [more]
A0A0D2WJ29_CAPO39.830e-3543.54tRNA pseudouridine(55) synthase n=2 Tax=Capsaspora... [more]
A0A7S2WQC3_9STRA9.750e-3437.67tRNA pseudouridine(55) synthase n=1 Tax=Rhizochrom... [more]
A0A7S1A4R1_NOCSC1.290e-3339.17tRNA pseudouridine(55) synthase n=1 Tax=Noctiluca ... [more]
A0A8K1C5Y9_PYTOL1.140e-3242.22Uncharacterized protein n=1 Tax=Pythium oligandrum... [more]
A0A067D9A4_SAPPC1.710e-3240.81tRNA pseudouridine(55) synthase n=2 Tax=Saprolegni... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig137811contigH-elongata_contig137811:23..1381 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score428.3
Seed ortholog evalue4.4e-117
Seed eggNOG ortholog2880.D8LRA8
KEGG koko:K07583
EggNOG free text desc.pseudouridine synthase activity
EggNOG OGsCOG1258@1,KOG2364@2759
EC5.4.99.25
COG Functional cat.J
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko01000,ko03016
Hectar predicted targeting categoryother localisation
Ec32 ortholog descriptionPseudouridine synthase, catalytic domain
Ec32 orthologEc-06_003220.1
Exons1
Model size1359
Cds size1359
Stop1
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929818.5574787-CDS-H-elongata_contig137811:22..13811622929818.5574787-CDS-H-elongata_contig137811:22..1381Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig137811 23..1381 +
1691679169.6538532-CDS-H-elongata_contig137811:22..13811691679169.6538532-CDS-H-elongata_contig137811:22..1381Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig137811 23..1381 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig137811.2656.1prot_H-elongata_contig137811.2656.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig137811 23..1381 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig137811.2656.1

>prot_H-elongata_contig137811.2656.1 ID=prot_H-elongata_contig137811.2656.1|Name=mRNA_H-elongata_contig137811.2656.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=453bp
AGTATSPTVISVKEALKLGLAEGLHSRLGDSGVVIDPDSDFVVEVTAKAP
EADAHAKALLLGESFQPPSGRKKQPGWPGSGRWSKKRQRREEHRNQGLTV
GAVKKGLLDLDGEGRARMRRWVKSLEAGRQGGNEKPQALKNHGDTEGNVR
RLERESDEVEGVSCMNENMDVDTTDVENGLEDKNESGKSKNHLMKEESIS
GSVSVEYTAQSSIVPASNTNDLNSGSDVRVPFQAYCDIAIRRLPIHFWGR
YTKLSRVVPQTPWVKGFFSVQEAVSEPFEEFSGSIEALLHGSGREDVDVR
MLGNGRPFSLELVDSLRSVDEITVALPALQKAVNSGVGQRNAGGGVAVSE
LRVAGPGDLPSDVQRVGEGKRKHYRCVVWVSRAVGDKELKRTLCNRPELV
VQQATPVRVLHRRTLMDRPRSIFDMRVDWLNDHFFVLNLTTSAGESGINL
IV*
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mRNA from alignment at H-elongata_contig137811:23..1381+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig137811.2656.1 ID=mRNA_H-elongata_contig137811.2656.1|Name=mRNA_H-elongata_contig137811.2656.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=1359bp|location=Sequence derived from alignment at H-elongata_contig137811:23..1381+ (Himanthalia elongata Himel1 dioecious)
GCGGGAACCGCAACCTCGCCGACTGTCATCTCTGTGAAGGAAGCCTTGAA GCTGGGACTGGCCGAGGGACTGCATTCCCGCCTCGGAGATTCGGGGGTTG TTATTGACCCCGATTCTGATTTCGTTGTGGAGGTGACTGCAAAGGCTCCC GAGGCCGACGCTCATGCAAAGGCGCTGCTGCTTGGGGAGTCGTTTCAGCC TCCATCGGGAAGAAAGAAGCAGCCCGGCTGGCCGGGGTCGGGACGGTGGT CCAAAAAACGCCAGAGACGAGAGGAACACCGCAACCAAGGTTTGACTGTA GGGGCGGTTAAGAAGGGCCTGTTGGACTTAGATGGTGAAGGGAGGGCGCG AATGCGGCGCTGGGTAAAGAGTCTCGAGGCAGGACGACAAGGCGGGAACG AAAAACCTCAAGCGCTCAAGAATCATGGGGATACGGAGGGAAACGTTCGA AGATTGGAGAGAGAGAGCGATGAAGTCGAAGGCGTGTCGTGTATGAACGA GAACATGGATGTCGATACGACGGACGTAGAAAACGGTCTTGAGGACAAGA ACGAGTCAGGAAAATCGAAAAATCACCTCATGAAAGAAGAAAGCATCAGT GGTTCGGTTTCGGTGGAATACACCGCGCAATCATCCATCGTGCCCGCCTC CAACACAAACGATCTCAACAGCGGCAGCGACGTTAGAGTCCCCTTCCAGG CATACTGCGATATAGCCATACGCCGTCTACCGATCCACTTCTGGGGTCGT TACACGAAGCTTTCTCGGGTGGTCCCTCAGACGCCGTGGGTGAAGGGTTT CTTCTCGGTTCAGGAGGCGGTGTCGGAGCCGTTCGAGGAGTTCTCCGGCT CTATCGAGGCGCTGCTCCACGGCTCCGGCCGAGAAGATGTGGACGTCCGA ATGCTAGGGAACGGTCGCCCCTTCTCCCTCGAGCTGGTGGACTCCCTCCG CTCGGTAGACGAGATCACCGTTGCCTTGCCCGCGCTGCAGAAAGCGGTCA ACTCGGGGGTGGGCCAAAGAAACGCTGGTGGTGGCGTCGCGGTGTCGGAG CTTAGGGTGGCCGGCCCGGGGGACCTCCCGAGCGACGTCCAGAGGGTCGG CGAAGGAAAGCGCAAGCATTACCGGTGTGTCGTGTGGGTGTCAAGGGCGG TGGGCGATAAGGAGCTGAAGCGAACGCTTTGCAATCGGCCAGAGCTCGTG GTGCAGCAGGCCACACCGGTGCGCGTCTTGCACCGGCGGACGCTCATGGA TCGGCCCCGGTCGATTTTCGACATGCGGGTGGATTGGCTCAACGATCACT TTTTTGTACTGAACCTCACGACTTCGGCTGGTGAGTCAGGAATAAATTTG ATCGTCTGA
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Coding sequence (CDS) from alignment at H-elongata_contig137811:23..1381+

>mRNA_H-elongata_contig137811.2656.1 ID=mRNA_H-elongata_contig137811.2656.1|Name=mRNA_H-elongata_contig137811.2656.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=2718bp|location=Sequence derived from alignment at H-elongata_contig137811:23..1381+ (Himanthalia elongata Himel1 dioecious)
GCGGGAACCGCAACCTCGCCGACTGTCATCTCTGTGAAGGAAGCCTTGAA
GCTGGGACTGGCCGAGGGACTGCATTCCCGCCTCGGAGATTCGGGGGTTG
TTATTGACCCCGATTCTGATTTCGTTGTGGAGGTGACTGCAAAGGCTCCC
GAGGCCGACGCTCATGCAAAGGCGCTGCTGCTTGGGGAGTCGTTTCAGCC
TCCATCGGGAAGAAAGAAGCAGCCCGGCTGGCCGGGGTCGGGACGGTGGT
CCAAAAAACGCCAGAGACGAGAGGAACACCGCAACCAAGGTTTGACTGTA
GGGGCGGTTAAGAAGGGCCTGTTGGACTTAGATGGTGAAGGGAGGGCGCG
AATGCGGCGCTGGGTAAAGAGTCTCGAGGCAGGACGACAAGGCGGGAACG
AAAAACCTCAAGCGCTCAAGAATCATGGGGATACGGAGGGAAACGTTCGA
AGATTGGAGAGAGAGAGCGATGAAGTCGAAGGCGTGTCGTGTATGAACGA
GAACATGGATGTCGATACGACGGACGTAGAAAACGGTCTTGAGGACAAGA
ACGAGTCAGGAAAATCGAAAAATCACCTCATGAAAGAAGAAAGCATCAGT
GGTTCGGTTTCGGTGGAATACACCGCGCAATCATCCATCGTGCCCGCCTC
CAACACAAACGATCTCAACAGCGGCAGCGACGTTAGAGTCCCCTTCCAGG
CATACTGCGATATAGCCATACGCCGTCTACCGATCCACTTCTGGGGTCGT
TACACGAAGCTTTCTCGGGTGGTCCCTCAGACGCCGTGGGTGAAGGGTTT
CTTCTCGGTTCAGGAGGCGGTGTCGGAGCCGTTCGAGGAGTTCTCCGGCT
CTATCGAGGCGCTGCTCCACGGCTCCGGCCGAGAAGATGTGGACGTCCGA
ATGCTAGGGAACGGTCGCCCCTTCTCCCTCGAGCTGGTGGACTCCCTCCG
CTCGGTAGACGAGATCACCGTTGCCTTGCCCGCGCTGCAGAAAGCGGTCA
ACTCGGGGGTGGGCCAAAGAAACGCTGGTGGTGGCGTCGCGGTGTCGGAG
CTTAGGGTGGCCGGCCCGGGGGACCTCCCGAGCGACGTCCAGAGGGTCGG
CGAAGGAAAGCGCAAGCATTACCGGTGTGTCGTGTGGGTGTCAAGGGCGG
TGGGCGATAAGGAGCTGAAGCGAACGCTTTGCAATCGGCCAGAGCTCGTG
GTGCAGCAGGCCACACCGGTGCGCGTCTTGCACCGGCGGACGCTCATGGA
TCGGCCCCGGTCGATTTTCGACATGCGGGTGGATTGGCTCAACGATCACT
TTTTTGTACTGAACCTCACGACTTCGGCTGGTGAGTCAGGAATAAATTTG
ATCGTCTGAGCGGGAACCGCAACCTCGCCGACTGTCATCTCTGTGAAGGA
AGCCTTGAAGCTGGGACTGGCCGAGGGACTGCATTCCCGCCTCGGAGATT
CGGGGGTTGTTATTGACCCCGATTCTGATTTCGTTGTGGAGGTGACTGCA
AAGGCTCCCGAGGCCGACGCTCATGCAAAGGCGCTGCTGCTTGGGGAGTC
GTTTCAGCCTCCATCGGGAAGAAAGAAGCAGCCCGGCTGGCCGGGGTCGG
GACGGTGGTCCAAAAAACGCCAGAGACGAGAGGAACACCGCAACCAAGGT
TTGACTGTAGGGGCGGTTAAGAAGGGCCTGTTGGACTTAGATGGTGAAGG
GAGGGCGCGAATGCGGCGCTGGGTAAAGAGTCTCGAGGCAGGACGACAAG
GCGGGAACGAAAAACCTCAAGCGCTCAAGAATCATGGGGATACGGAGGGA
AACGTTCGAAGATTGGAGAGAGAGAGCGATGAAGTCGAAGGCGTGTCGTG
TATGAACGAGAACATGGATGTCGATACGACGGACGTAGAAAACGGTCTTG
AGGACAAGAACGAGTCAGGAAAATCGAAAAATCACCTCATGAAAGAAGAA
AGCATCAGTGGTTCGGTTTCGGTGGAATACACCGCGCAATCATCCATCGT
GCCCGCCTCCAACACAAACGATCTCAACAGCGGCAGCGACGTTAGAGTCC
CCTTCCAGGCATACTGCGATATAGCCATACGCCGTCTACCGATCCACTTC
TGGGGTCGTTACACGAAGCTTTCTCGGGTGGTCCCTCAGACGCCGTGGGT
GAAGGGTTTCTTCTCGGTTCAGGAGGCGGTGTCGGAGCCGTTCGAGGAGT
TCTCCGGCTCTATCGAGGCGCTGCTCCACGGCTCCGGCCGAGAAGATGTG
GACGTCCGAATGCTAGGGAACGGTCGCCCCTTCTCCCTCGAGCTGGTGGA
CTCCCTCCGCTCGGTAGACGAGATCACCGTTGCCTTGCCCGCGCTGCAGA
AAGCGGTCAACTCGGGGGTGGGCCAAAGAAACGCTGGTGGTGGCGTCGCG
GTGTCGGAGCTTAGGGTGGCCGGCCCGGGGGACCTCCCGAGCGACGTCCA
GAGGGTCGGCGAAGGAAAGCGCAAGCATTACCGGTGTGTCGTGTGGGTGT
CAAGGGCGGTGGGCGATAAGGAGCTGAAGCGAACGCTTTGCAATCGGCCA
GAGCTCGTGGTGCAGCAGGCCACACCGGTGCGCGTCTTGCACCGGCGGAC
GCTCATGGATCGGCCCCGGTCGATTTTCGACATGCGGGTGGATTGGCTCA
ACGATCACTTTTTTGTACTGAACCTCACGACTTCGGCTGGTGAGTCAGGA
ATAAATTTGATCGTCTGA
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