mRNA_H-elongata_contig10315.264.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig10315.264.1
Unique NamemRNA_H-elongata_contig10315.264.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
BLAST of mRNA_H-elongata_contig10315.264.1 vs. uniprot
Match: A0A6H5KFQ3_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KFQ3_9PHAE)

HSP 1 Score: 552 bits (1423), Expect = 1.500e-183
Identity = 373/697 (53.52%), Postives = 419/697 (60.11%), Query Frame = 1
Query:    1 AQNFWTVPEVVSEIRDKKARHHLEILPFELKLREPSDEAMRFAAGFARQTGDLRSLSRVDLRVIALTYMLERQETGGSHLRTAPVPTGTRVNSKSTGVSATTLDPPREIPQPVDNPKHLDEE--------------AAGVDALPIKTSGEKPDVEETEATG--EINADVGVESLCQAMESAWTEEV-VADEGSSKQEASGRVAKQEENVMDALGGGGEYLDALGGVMAGTAAGKDVETRLTEGEDEEEEELDGGEVANGKHRAEGGREKRFEDDGGVEGVDNHXXXXXXXXXXXXDEWEPEGEGSVEEEASKTPPEAGAADEAVFVAGDFPVLGLGRGD---AAA---------SDLTTPLPTSAHSASPPAEEERSWSLLARSNPAPFKVPAKQDPTPLPAAAPVEQPVHTG---LGNFV---------------KGPPDGAKGAGTSRILSSAAAFGVSXXXXXXXXEDDEDGVGWVTPSNIKSHKAAGLGLNGPSQFQRKV----PVALASKCRAGCVTTDFAMQNVILQVGLPLLSLDGMAVRRVRQWILRCAACFKTCTEMGRLFCPVCGNASLDRVSCSVNAKTGATHVHLRKNRKVNLRGSKYSIPAPNPRKGRFEGDLLLREDQLLTGIWAQKAKRKEKDVSSMFGKDITGDVGLTVSRASDIMVGYGRKNPNAARGRERRGKKGIKNR 1938
            A+NFWT+PEVV+EIRDKKAR HLE LPFELKLREPSDEAM+FAA FARQTGDLRSLSRVDL+VIAL YMLERQETG  HLRTAP+  GT+VNS   GVSA TL P  +  +        D                AA   A   K S  +PD     A G  E  A   VESLC A++ AWT +V  A +G       G  A+                                                                               XXXXXXXXXXXX       E +  E+A+ T         A F A DFP LG G+     AAA         S    P  T+A + +       SWSL+ARSNPAPFKVPAK DP PLPAAA    P+ T    +G+F                +  PDGA   GTSRI+S+AAAFG                 GWV PSNIKS KAAG+GLNGPSQ QRK        +AS+CRAGCVTTDFAMQNVILQVGLPLLSLDGMAV RV+QWILRCAACFKTCTEMGRLFCPVCGNA+LDRVSCSVNA +GAT VHLRKN KVNLRGSK+SIPA NP KGRFEGDLLLREDQLL+GIWAQKA+RKEKDVSSMFG+DITG+VGLTVS+++DI+VGYGRKNPN+ARGRERRGKKG+K R
Sbjct:   98 AENFWTIPEVVAEIRDKKARQHLESLPFELKLREPSDEAMKFAASFARQTGDLRSLSRVDLKVIALAYMLERQETGAVHLRTAPIRPGTKVNSNPKGVSAPTLAPANDATEETSAKVFADAALKDATTTTGDVNTAAAAATADSGKPSEREPDTPAATAIGRKEKEAAGEVESLCTAVKQAWTNDVGTAGDG------HGPAAENXXXXXXXXXXXXXXXXXXXXXXXXXXX-----------------------------------------------XXXXXXXXXXXXXXXXXXXXXXAEKAKSEDAATTA-------SAPFSADDFPSLGGGKSGPVPAAAPXXXXXXTSSPFLPPAATAALATAHADAPTSSWSLMARSNPAPFKVPAKADPAPLPAAA--APPLATDNDPVGHFATSGAASPGAATAAADRPRPDGAT-PGTSRIMSTAAAFG-----------------GWVNPSNIKSQKAAGIGLNGPSQTQRKGIHKGRSKVASQCRAGCVTTDFAMQNVILQVGLPLLSLDGMAVHRVKQWILRCAACFKTCTEMGRLFCPVCGNATLDRVSCSVNANSGATRVHLRKNHKVNLRGSKFSIPAANPAKGRFEGDLLLREDQLLSGIWAQKARRKEKDVSSMFGEDITGNVGLTVSKSADIVVGYGRKNPNSARGRERRGKKGVKTR 714          
BLAST of mRNA_H-elongata_contig10315.264.1 vs. uniprot
Match: D8LBA5_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LBA5_ECTSI)

HSP 1 Score: 525 bits (1352), Expect = 3.690e-175
Identity = 332/666 (49.85%), Postives = 371/666 (55.71%), Query Frame = 1
Query:    1 AQNFWTVPEVVSEIRDKKARHHLEILPFELKLREPSDEAMRFAAGFARQTGDLRSLSRVDLRVIALTYMLERQETGGSHLRTAPVPTGTRVNSKSTGVSATTLDPPREIPQPVDNPKHLDEEAAGVDALPIKTSGEKPDVEETEATGEINADVGVESLCQAMESAWTEEVVADEGSSKQEASGRVAKQEENVMDALGGGGEYLDALGGVMAGTAAGKDVETRLTEGEDEEEEELDGGEVANGKHRAEGGREKRFEDDGGVEGVDNHXXXXXXXXXXXXDEWEPEGEGSVEEEASKTPPEAGAADEAVFVAGDFPVLGLGRGDAAASDLTTPLPTSAHSASPPAEEERSWSLLARSNPAPFKVPAKQDPTPLPAAAPV------EQPVHTGLGNFVKGP----------PDGAKGAGTSRILSSAAAFGVSXXXXXXXXEDDEDGVGWVTPSNIKSHKAAGLGLNGPSQFQRKVP----VALASKCRAGCVTTDFAMQNVILQVGLPLLSLDGMAVRRVRQWILRCAACFKTCTEMGRLFCPVCGNASLDRVSCSVNAKTGATHVHLRKNRKVNLRGSKYSIPAPNPRKGRFEGDLLLREDQLLTGIWAQKAKRKEKDVSSMFGKDITGDVGLTVSRASDIMVGYGRKNPNAARGRERRGKKGIKNR 1938
            A+NFWT+PEVV+EIRDKKAR HLE LPFELKLREPSDEAM+FAA FARQTGDLRSLSRVDL+VIAL YMLERQETG  HLRTAP+  GT+VNS   GVSA TL P  +  +                                EA+ ++ AD  +++                                                                                                                                       AS T                           A SD     PTS            SWSL+ARSNPAPFKVPAK DP PLPAA         + P      + V  P          PDGAK  GTSRI+S+AAAFGVS         DD+DG GWV PSNIKS KAAG+GLNGPSQ QRK        +AS+CRAGCVTTDFAMQNVILQVGLPLLSLDGMAV RV+QWILRCAACFKTCTEMGRLFCPVCGNA+LDRVSCSVNA +GAT VHLRKN KVNLRGSK+SIPA NP KGRFEGDLLLREDQLL+GIWAQKA+RKEKDVSSMFG+DITG+VGLTVS+++D++VGYGRKNPN+ARGRERRGKKG+K R
Sbjct:   98 AENFWTIPEVVAEIRDKKARQHLESLPFELKLREPSDEAMKFAASFARQTGDLRSLSRVDLKVIALAYMLERQETGAGHLRTAPIRPGTKVNSNRKGVSAPTLAPANDATE--------------------------------EASAKVLADATLQT---------------------------------------------------------------------------------------------------------------------------------------ASTT-------------------XXXXXXXXAPSDA----PTS------------SWSLMARSNPAPFKVPAKADPAPLPAAXXXXXLDTDDDPAGHFTTSGVASPGAAAAADRPRPDGAK-PGTSRIMSTAAAFGVSGGGA-----DDDDGEGWVNPSNIKSQKAAGIGLNGPSQTQRKGSHKGRSTVASQCRAGCVTTDFAMQNVILQVGLPLLSLDGMAVHRVKQWILRCAACFKTCTEMGRLFCPVCGNATLDRVSCSVNANSGATRVHLRKNHKVNLRGSKFSIPAANPAKGRFEGDLLLREDQLLSGIWAQKARRKEKDVSSMFGEDITGNVGLTVSKSADLVVGYGRKNPNSARGRERRGKKGVKTR 555          
BLAST of mRNA_H-elongata_contig10315.264.1 vs. uniprot
Match: A0A835YK00_9STRA (Putative RNA binding protein NOB1 n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YK00_9STRA)

HSP 1 Score: 315 bits (807), Expect = 4.860e-95
Identity = 240/658 (36.47%), Postives = 302/658 (45.90%), Query Frame = 1
Query:    1 AQNFWTVPEVVSEIRDKKARHHLEILPFELKLREPSDEAMRFAAGFARQTGDLRSLSRVDLRVIALTYMLERQETGGSHLRTAPVPTGTRVNSKSTGVSATTLDPPREIPQPVDNPKHLDEEAAGVDALPIKTSGEKPDVEETEATGEINADVGVESLCQAMESAWTEEVVADEGSSKQEASGRVAKQEENVMDALGGGGEYLDALGGVMAGTAAGKDVETRLTEGEDEEEEELDGGEVANGKHRAEGGREKRFEDDGGVEGVDNHXXXXXXXXXXXXDEWEPEGEGSVEEEASKTPPEAGAADEAVFVAGDFPVLGLGRGDAAASDLTTPLPTSAHSASPPAEEERSWSLLARSNPAPFKVPAKQDPTPLPAAAPVEQPVHTGLGNFVKGPPDGAKGAGTSRILSSAAAFGVSXXXXXXXXEDDEDGVGWVTPSNIKSHKAAGLGLNGPS-----------QFQRKVPVALASKCRAGCVTTDFAMQNVILQVGLPLLSLDGMAVRRVRQWILRCAACFKTCTEMGRLFCPVCGNASLDRVSCSVNAKTGATHVHLRKNRKVNLRGSKYSIPAPNPRKGRFEGDLLLREDQLLTGIWAQKAKRKEKDVSSMFGKDITGDVGLTVSRAS-DIMVGYGRKNPNAARGRERRGKKGIKNR 1938
            A+ FWTVP V++EIRDKKARH L+ LP+ELKLREPS+EA+ FA GFAR+TGDLRSLSRVDL VIALTY LE++ETG +H++  P  T  R  S     +A    P  +     D             A P+ TS               N     + L                             QEEN               G      +                +EELD                   ED G  EG D+                                                                        SA P A+  R+                                                  A +SRIL+ +++ GV+          ++DG+GWVTP+N    K+ GL L+GP+           +  R+   ALA +CRAGCVTTDFAMQNV+LQ+GLPLLS++GMAVRRV+ W+LRCAACFKT T+M +LFCPVCGN++LD+VSCSV+  TG   +HL   RK NLRG+KYSIP P    GRF GDLLLREDQL++GIWAQK+KR  K    MFG+ I   VGL++ + S  ++VGYGRKNPN+ RGRERRGK G  NR
Sbjct:   51 AEQFWTVPAVLAEIRDKKARHLLDTLPYELKLREPSEEALSFAIGFARETGDLRSLSRVDLSVIALTYDLEKRETGAAHVKKTPKKTILRQPS-----AAAAAPPSAQXXXXXDA------------AQPVATS---------------NGSAAAQHL-----------------------------QEENT--------------GSDAQSASXXXXXXXXXXXXXXXPDEELD----------------MADEDYGSSEGEDD------------------------------------------------------------------------SAEPAAQAPRN--------------------------------------------------ALSSRILNISSSTGVTSVDAA-----EDDGIGWVTPANFAEVKSTGLSLSGPAPGGKSKGAKARRRAREDAKALA-QCRAGCVTTDFAMQNVLLQMGLPLLSVNGMAVRRVKHWVLRCAACFKTTTDMEKLFCPVCGNSTLDKVSCSVDGATGQMRLHLNPKRKPNLRGTKYSIPKPGV-SGRFNGDLLLREDQLMSGIWAQKSKRTVKSQGCMFGEHIMDGVGLSMGKQSAGVVVGYGRKNPNSQRGRERRGK-GSSNR 487          
BLAST of mRNA_H-elongata_contig10315.264.1 vs. uniprot
Match: A0A7S3XQN7_HETAK (Hypothetical protein n=1 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A7S3XQN7_HETAK)

HSP 1 Score: 225 bits (573), Expect = 6.960e-65
Identity = 115/204 (56.37%), Postives = 147/204 (72.06%), Query Frame = 1
Query: 1318 HKAAGLGLNGPSQFQRKVPVALASKCRAGCVTTDFAMQNVILQVGLPLLSLDGMAVRRVRQWILRCAACFKTCTEMGRLFCPVCGNASLDRVSCSVNAKTGATHVHLRKN--RKVNLRGSKYSIPAPNPRKGRFEGDLLLREDQLLTGIWAQKAKRKEKDVSSMFGKDITGDVGLTVSRASDIMVGYGRKNPNAARGRERRGKK 1923
            H  AG GL        + P    +   AGC TTDFAMQNV++Q+GLPLLS+DGM VRRV+QW+LRC ACFK   +M RLFCP CG  +L +VS S++A+TG   +HLRK   R     G++YS+PAP  + GRF+G+LLLREDQL  GIW QKA R +K+VSS FG+DIT + G+ V++A DI+VG+GR+NPN  +GRERRGKK
Sbjct:    3 HLMAGGGLTAARGAPARPPPLTTA---AGCATTDFAMQNVLVQIGLPLLSVDGMVVRRVKQWVLRCHACFKLTHDMTRLFCPTCGGPTLQKVSVSLDARTGRAKLHLRKKGRRPPAQAGARYSLPAPG-KAGRFQGELLLREDQLKMGIWQQKANRTKKNVSSAFGEDITQNFGMNVNKAPDIVVGFGRRNPNQMKGRERRGKK 202          
BLAST of mRNA_H-elongata_contig10315.264.1 vs. uniprot
Match: A0A8K1FH82_PYTOL (Uncharacterized protein n=1 Tax=Pythium oligandrum TaxID=41045 RepID=A0A8K1FH82_PYTOL)

HSP 1 Score: 227 bits (578), Expect = 3.570e-62
Identity = 196/643 (30.48%), Postives = 271/643 (42.15%), Query Frame = 1
Query:    1 AQNFWTVPEVVSEIRDKKARHHLEILPFELKLREPSDEAMRFAAGFARQTGDLRSLSRVDLRVIALTYMLERQETGGSHLRTAPVPTGTRVNSKSTGVSATTLDPPREIPQPVDNPKHLDEEAAGVDALPIKTSGEKPDVEETEATGEINADVGVESLCQAMESAWTEEVVADEGSSKQEASGRVAKQEENVMDALGGGGEYLDALGGVMAGTAAGKDVETRLTEGEDEEEEELDGGEVANGKHRAEGGREKRFEDDGGVEGVDNHXXXXXXXXXXXXDEWEPEGEGSVEEEASKTPPEAGAADEAVFVAGDFPVLGLGRGDAAASDLTTPLPTSAHSASPPAEEERSWSLLARSNPAPFKVPAKQDPTPLPAAAPVEQPVHTGLGNF-VKGPPDGAKGAGTSRILSSAAAFGVSXXXXXXXXEDDEDGVGWVTPSNIKSHKAAGLGLNGPSQ-FQRKVPVALASKCRAGCVTTDFAMQNVILQVGLPLLSLDGMAVRRVRQWILRCAACFKTCTEMGRLFCPVCGNASLDRVSCSVNAKTGATHVHLRKNRKVNLRGSKYSIPAPNPRKGRFEGDLLLREDQLLTGIWAQKAKRKEKDVSSMFGKDITGDVGLTVSRASDIMVGYGRKNPNAARGRERRGKK 1923
            A+NFWTVP+VV+EIRDK+AR  L+ LPF L+ REPS EAM+  A F+R+TGD  SLS  DLRV+ALTYMLE ++ G  HL+ +P                                                           EA+  I  D                            A+G++          + GG +Y     G   G   G +                                 K   D+  +E                               A+K   E GA  +                                      EEE              +V    D     A A  +QP+   + N  VK           SRILS+  A   +         +++DG  W+   N  + KA+  G     +  + ++PVA        C+TTD++MQNV+LQ+GL LLS +GM ++RV+QWIL+C ACF T TEM RLFCP CGN++L+RVS S+  + G    + R NR V L G+K+S+P P   KG  +GDLLLREDQL+ GIW Q+ ++ +K + S FG+++  D+G+   + + I+VGYGR NPNA RGRERRGKK
Sbjct:   51 AENFWTVPDVVAEIRDKRARAILDALPFTLQTREPSAEAMKAVANFSRKTGDFASLSLTDLRVMALTYMLETEQNGTDHLKESP-----------------------------------------------------------EASATITRD----------------------------ANGKI----------VSGGPQYPCKFFGTAIGCKYGDEC--------------------------------KFIHDESVLE-------------------------------ANKA--EDGAKPKVAIXXXXXXXXXXXXXXXXXXXXXEK------------EEE--------------EVEMNDDDFDAEAVAAFDQPIPEEIRNADVK-----------SRILSTGFAASSTAGA------NEDDGKNWINAVNYSNFKASPFGDGKNLETIRHELPVA--------CITTDYSMQNVMLQIGLRLLSTEGMIIKRVKQWILKCIACFTTTTEMERLFCPKCGNSTLERVSYSIG-QDGQMVFYHRTNRPVKLTGTKFSLPKP---KGGRQGDLLLREDQLMMGIWGQRQRQHKKVMQSAFGENMAHDLGVKAEKNTSIVVGYGRMNPNAQRGRERRGKK 476          
BLAST of mRNA_H-elongata_contig10315.264.1 vs. uniprot
Match: A0A1Z5K7V9_FISSO (RNA-binding protein NOB1 n=2 Tax=Fistulifera solaris TaxID=1519565 RepID=A0A1Z5K7V9_FISSO)

HSP 1 Score: 229 bits (585), Expect = 9.740e-62
Identity = 220/682 (32.26%), Postives = 301/682 (44.13%), Query Frame = 1
Query:    1 AQNFWTVPEVVSEIRDKKARHHLEILPFELKLREPSDEAMRFAAGFARQTGDLRSLSRVDLRVIALTYMLERQETGG--SHLRTAPVPTGTRVNSKSTGVSATTLDPPREIP-QPVDNPKHLDEEAAGVDALPIKTSGEKPDVEET--EATGEINADVGVESLCQAMESAWTEEVVADEGSSKQEASGRVAKQEENVMDALGGGGEYLDALGGVMAGTAAGKDVETRLTEGEDEEEEELDGGEVANGKHR--AEGGREKRFEDDGGVEGVDNHXXXXXXXXXXXXDEWEPEGEGSVEEEASKTPPEAGAADEAVFVAGDFPVLGLGR------GDAAASDLTTPLPTSAHSASPPAEEERSWSLLARSNPAPFKVPAKQD---PTPLPAAAPVEQPVHTGLG----NFVKGPPDGAKGAGTSRILSSAAAFGVSXXXXXXXXEDDEDGVGWVTPSN-IKSHKAAGL--GLNGPSQFQRKVPVALAS----KCRAGCVTTDFAMQNVILQVGLPLLSLDGMAVRRVRQWILRCAACFKTCTEMG--------RLFCPVCGNASLDRVSCSVNAKTGATHVHLRKNRKVNLRGSKYSIPAPNPRKGRFEGDLLLREDQLLTGIWAQKAK-----RKEKDVSSMFGKDITGDVGL-TVSRASDIMVGYGRKNPNAARGRERRGKK 1923
            A  F+TVP V+ EIRD KAR HL+ LPFEL+ REPS EA++    FARQTGD +SLS VDL+V+ L Y LER+   G   H+R  P         +  GV    +    E+  +  D  +  D E    DA P+++     D +      +G    D  VE         W   V   EGSS                         L  +   +   A  +DV ++                   GK    A GG+    EDD     V N+                     ++++E                   DFP L + R      GD    D   P+   A   +    +++S   +++S          QD   P P P       P  +       N  K   +  K    SRI+      G          + ++DG GW+T +N +K+ K+AG+      PS    K    +        RA C TTDFAMQNVILQ+ L LLS+DG+ VR+++ W+ RC AC+K  T           RLFC  CG+  + R++ SV+ KTG   +HL K  K NLRG+K+S+P P     RF GDLLLREDQL+ G W QK K     + +    SMFG+DI  +VG  T +  +DI VG+GR+NPN A+GRERRGKK
Sbjct:   34 AHQFYTVPAVLQEIRDAKAREHLDSLPFELQAREPSKEAVQTVIDFARQTGDYQSLSVVDLQVLGLLYDLEREGCHGVIDHIRKTP--------KRMLGVGKVEMLVKNEVSTEEYDVEEVSDSEDEEDDAEPVESVTIYADEQRACIPPSGVSETDEPVEPKT------WAMLVNPKEGSSD------------------------LPKITPTVPNPALTEDVMSKPF-----------------GKMNLSASGGQFSDAEDDEFETSVANNNNDHD----------------ALQKELQS----------------DFPSLLVARLVPYEGGD---DDQLEPVDLEAQRRADELRKQQSLKPISKSGKLYNSFRGYQDLLKPKPKPLKKATTSPEDSAESAIQHNHDK---EDEKKPQESRIMGGMTVAGQDG-------DVEDDGEGWITSTNELKAMKSAGVLDPQRNPSHLDMKANAPIVHGPPISQRAACATTDFAMQNVILQMNLELLSVDGVKVRKLKSWVTRCGACYKIYTNADNAGPFGSKRLFCERCGSDFMQRIAASVDGKTGRLRLHLSKKYKHNLRGTKFSLPKPGT-GNRFHGDLLLREDQLMMGAWNQKVKISSGGKAKNAAQSMFGRDIATNVGCYTTATNTDIKVGFGRRNPNEAKGRERRGKK 614          
BLAST of mRNA_H-elongata_contig10315.264.1 vs. uniprot
Match: A0A1W0A030_9STRA (RNA-binding protein NOB1 n=1 Tax=Thraustotheca clavata TaxID=74557 RepID=A0A1W0A030_9STRA)

HSP 1 Score: 224 bits (572), Expect = 2.320e-61
Identity = 118/240 (49.17%), Postives = 158/240 (65.83%), Query Frame = 1
Query: 1204 SRILSSAAAFGVSXXXXXXXXEDDEDGVGWVTPSNIKSHKAAGLGLNGPSQFQRKVPVALASKCRAGCVTTDFAMQNVILQVGLPLLSLDGMAVRRVRQWILRCAACFKTCTEMGRLFCPVCGNASLDRVSCSVNAKTGATHVHLRKNRKVNLRGSKYSIPAPNPRKGRFEGDLLLREDQLLTGIWAQKAKRKEKDVSSMFGKDITGDVGLTVSRASDIMVGYGRKNPNAARGRERRGKK 1923
            SRILS  A F  S         DD+DG  WV   N   + ++  G  G S  Q      +  K + GC+TTD++MQNV+LQ+GL LLS DGM ++RV+QW+L+CAAC+KT TE+ R FCPVCGNA+L+RV+CS++  T    ++ R NR   LRG+K+S+P P   KG  +GD+LLREDQLL GIW Q+ K   K + S FG+ +  D+G+ V + + I +GYGR NPNA +GRERRGKK
Sbjct:  250 SRILS--AGFAASSNAGA----DDDDGKNWVNVENSTQYTSSPFGT-GTSVDQ------VDEKTKVGCITTDYSMQNVMLQMGLNLLSTDGMVIKRVKQWVLKCAACYKTTTELTRQFCPVCGNATLERVACSLDKDTEQLTLYTRANRPTKLRGTKFSLPMP---KGGRQGDILLREDQLLHGIWGQRQKASSKVMKSAFGEHVAHDLGVKVEKQTSITIGYGRMNPNAQKGRERRGKK 473          
BLAST of mRNA_H-elongata_contig10315.264.1 vs. uniprot
Match: A0A6G0W830_9STRA (Uncharacterized protein n=1 Tax=Aphanomyces euteiches TaxID=100861 RepID=A0A6G0W830_9STRA)

HSP 1 Score: 223 bits (569), Expect = 4.440e-61
Identity = 192/641 (29.95%), Postives = 261/641 (40.72%), Query Frame = 1
Query:    1 AQNFWTVPEVVSEIRDKKARHHLEILPFELKLREPSDEAMRFAAGFARQTGDLRSLSRVDLRVIALTYMLERQETGGSHLRTAPVPTGTRVNSKSTGVSATTLDPPREIPQPVDNPKHLDEEAAGVDALPIKTSGEKPDVEETEATGEINADVGVESLCQAMESAWTEEVVADEGSSKQEASGRVAKQEENVMDALGGGGEYLDALGGVMAGTAAGKDVETRLTEGEDEEEEELDGGEVANGKHRAEGGREKRFEDDGGVEGVDNHXXXXXXXXXXXXDEWEPEGEGSVEEEASKTPPEAGAADEAVFVAGDFPVLGLGRGDAAASDLTTPLPTSAHSASPPAEEERSWSLLARSNPAPFKVPAKQDPTPLPAAAPVEQPVHTGLGNFVKGPPDGAKGAGTSRILSSAAAFGVSXXXXXXXXEDDEDGVGWVTPSNIKSHKAAGLGLNGPSQFQRKVPVALASKCRAGCVTTDFAMQNVILQVGLPLLSLDGMAVRRVRQWILRCAACFKTCTEMGRLFCPVCGNASLDRVSCSVNAKTGATHVHLRKNRKVNLRGSKYSIPAPNPRKGRFEGDLLLREDQLLTGIWAQKAKRKEKDVSSMFGKDITGDVGLTVSRASDIMVGYGRKNPNAARGRERRGKK 1923
            A+N WT  +V++EI+D KAR  +  LP ELK R+PS++ M     F+R TGD   LS  DLR++ALTYM ER+  G  H+RTAP  + T+V    TG  A    PP ++       ++L       +      S    D   T+   +I+A                                                         V       KDVE +  E                                                                E EA K        D+AV                                      E S    A                 +P   P+   + +     VK           SRILS  A F  +         +D+DG  WV  +N   +  +  G N       K   A+ S  + GC+TTD++MQNV+LQ+GL L+S DGM + RV+QWIL+CAACFKT TE+ R FCPVCGN +L+R+SCS++  T    ++ R NR + LRGSK+S+P P    G   GDLLLREDQL+ GIWAQ+ K   K + S FG+ +  D+G+   + + I VG+GR NPNA +GRERRGKK
Sbjct:   24 AENLWTTSDVLAEIKDSKARRFVARLPVELKTRDPSEKDMEAVVAFSRLTGDFSFLSLTDLRIMALTYMFERETNGVEHIRTAPKVSETKV----TGPKA----PPAKV-----RCRYLHTPGGCRNGASCPFSHNLNDNAVTQPLPKIDAPXXXXXXXXXXXX------------------------------------XXXXXXXHVKVQETTDKDVEEKTDE----------------------------------------------------------------EGEAEK--------DKAV--------------------------------------ENSTESAA-----------------IPPPVPISNAIRSA---DVK-----------SRILS--AGFNAASNAGA----EDDDGKNWVNAANQAEYSQSPFGSN-------KEVKAIDSTIQVGCITTDYSMQNVLLQMGLHLISTDGMVINRVKQWILKCAACFKTTTELTRQFCPVCGNHTLERISCSLDKDTEQLTLYTRANRPMKLRGSKFSLPMPT---GGRNGDLLLREDQLMHGIWAQRQKSSAKVLKSAFGEHVAHDLGVKAEKQTSITVGFGRMNPNAQKGRERRGKK 458          
BLAST of mRNA_H-elongata_contig10315.264.1 vs. uniprot
Match: A0A067BW92_SAPPC (Uncharacterized protein n=3 Tax=Saprolegnia TaxID=4769 RepID=A0A067BW92_SAPPC)

HSP 1 Score: 222 bits (565), Expect = 1.110e-60
Identity = 113/240 (47.08%), Postives = 153/240 (63.75%), Query Frame = 1
Query: 1204 SRILSSAAAFGVSXXXXXXXXEDDEDGVGWVTPSNIKSHKAAGLGLNGPSQFQRKVPVALASKCRAGCVTTDFAMQNVILQVGLPLLSLDGMAVRRVRQWILRCAACFKTCTEMGRLFCPVCGNASLDRVSCSVNAKTGATHVHLRKNRKVNLRGSKYSIPAPNPRKGRFEGDLLLREDQLLTGIWAQKAKRKEKDVSSMFGKDITGDVGLTVSRASDIMVGYGRKNPNAARGRERRGKK 1923
            SRILS+  A             DD+DG  WV   N      +  G     +        +    + GC+TTD++MQNV+LQ+GL LLS DGM ++RV+QW+L+C ACFKT TE+ R FCPVCGNA+L+RV+CS++ +T    ++ R NR   LRG+K+S+PAP   KG  +GDLLLREDQL+ GIW Q+ K   K + S FG+ +  D+G+ V + + I +GYGR NPNA +GRERRGKK
Sbjct:  220 SRILSAGFAA------QSNVGADDDDGKNWVNVENATQFTTSPFGTGTAVE-------KVDENMKVGCITTDYSMQNVMLQMGLHLLSTDGMVIKRVKQWVLKCVACFKTTTELERQFCPVCGNATLERVACSLDKETEQLTLYTRANRPTKLRGTKFSLPAP---KGGRQGDLLLREDQLMHGIWGQRQKASSKVMKSAFGEHVAHDLGVKVEKQTSITIGYGRMNPNAQKGRERRGKK 443          
BLAST of mRNA_H-elongata_contig10315.264.1 vs. uniprot
Match: A0A6A3JDU7_9STRA (Uncharacterized protein n=1 Tax=Phytophthora rubi TaxID=129364 RepID=A0A6A3JDU7_9STRA)

HSP 1 Score: 223 bits (568), Expect = 1.400e-60
Identity = 205/646 (31.73%), Postives = 262/646 (40.56%), Query Frame = 1
Query:    1 AQNFWTVPEVVSEIRDKKARHHLEILPFELKLREPSDEAMRFAAGFARQTGDLRSLSRVDLRVIALTYMLERQETGGSHLRTAPV--PTGTRV-NSKSTGVSATTLDPPREIPQPVDNPKHLDEEAAGVDALPIKTSGEKPDVEETEATGEINADVGVESLCQAMESAWTEEVVADEGSSKQEASGRVAKQEENVMDALGGGGEYLDALGGVMAGTAAGKDVETRLTEGEDEEEEELDGGEVANGKHRAEGGREKRFEDDGGVEGVDNHXXXXXXXXXXXXDEWEPEGEGSVEEEASKTPPEAGAADEAVFVAGDFPVLGLGRGDAAASDLTTPLPTSAHSASPPAEEERSWSLLARSNPAPFKVPAKQDPTPLPAAAPVEQPVHTGLGNF-VKGPPDGAKGAGTSRILSSAAAFGVSXXXXXXXXEDDEDGVGWVTPSNIKSHKAAGLGLN-GPSQFQRKVPVALASKCRAGCVTTDFAMQNVILQVGLPLLSLDGMAVRRVRQWILRCAACFKTCTEMGRLFCPVCGNASLDRVSCSVNAKTGATHVHLRKNRKVNLRGSKYSIPAPNPRKGRFEGDLLLREDQLLTGIWAQKAKRKEKDVSSMFGKDITGDVGLTVSRASDIMVGYGRKNPNAARGRERRGKK 1923
            A+NFWTVP+V+ EIRDKK+R  LE LPF L+ REPS EAM+    F+R+TGD   LS  DLRV+AL+Y LE +  G  HLRT+P    T TR  N K  G S T                            P K  G         A G    D          E  +T +  A              K EE   DA     + +D                      E  EE E                                                                                                            P+EE                       T  PAA   EQ +   + N  VK           SRI+   AA   +          D+DG  W+T  N     A+  G   G  +   ++PVA        C+TTDF+MQNV+LQ+GL LLS +GM ++RV+QWILRC ACF T TEM RLFCP CGN+++DRVS S++ + G    + R NR   L G+KYS+P P   KG   GDLLLREDQLL GIW Q+ ++ +K + S FG+++  D+G+   R + I+VGYGR NPNA +GRERRGKK
Sbjct:   72 AENFWTVPDVLDEIRDKKSRAILERLPFTLQTREPSAEAMKAVVNFSRKTGDFAYLSLTDLRVMALSYQLEVEANGADHLRTSPELSQTVTRAANGKIVGGSQTNF--------------------------PCKYFGT--------AMGCKYGD----------ECRFTHDEAA-------------VKAEEGAADATK---KKVDIXXXXXXXXXXXXXXXXXXXXXEKTEETET-----------------------------------------------------------------------------------------------------------PSEE-----------------------TEEPAA---EQVISEEIRNADVK-----------SRIMGGFAASSNAGAA-------DDDGKNWITGDNFGKFTASPFGDGKGLEEIASRLPVA--------CITTDFSMQNVMLQIGLRLLSTEGMIIKRVKQWILRCIACFTTSTEMDRLFCPKCGNSTMDRVSYSLD-RDGHMTFYTRANRPTKLSGTKYSLPKP---KGGRNGDLLLREDQLLVGIWGQRQRQHKKVMQSAFGENVAHDLGVKAERQTGIVVGYGRMNPNAQKGRERRGKK 494          
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig10315.264.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6H5KFQ3_9PHAE1.500e-18353.52Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D8LBA5_ECTSI3.690e-17549.85Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A835YK00_9STRA4.860e-9536.47Putative RNA binding protein NOB1 n=1 Tax=Tribonem... [more]
A0A7S3XQN7_HETAK6.960e-6556.37Hypothetical protein n=1 Tax=Heterosigma akashiwo ... [more]
A0A8K1FH82_PYTOL3.570e-6230.48Uncharacterized protein n=1 Tax=Pythium oligandrum... [more]
A0A1Z5K7V9_FISSO9.740e-6232.26RNA-binding protein NOB1 n=2 Tax=Fistulifera solar... [more]
A0A1W0A030_9STRA2.320e-6149.17RNA-binding protein NOB1 n=1 Tax=Thraustotheca cla... [more]
A0A6G0W830_9STRA4.440e-6129.95Uncharacterized protein n=1 Tax=Aphanomyces euteic... [more]
A0A067BW92_SAPPC1.110e-6047.08Uncharacterized protein n=3 Tax=Saprolegnia TaxID=... [more]
A0A6A3JDU7_9STRA1.400e-6031.73Uncharacterized protein n=1 Tax=Phytophthora rubi ... [more]

Pages

back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig10315contigH-elongata_contig10315:3051..8211 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score456.1
Seed ortholog evalue2.6e-125
Seed eggNOG ortholog2880.D8LBA5
Preferred nameNOB1
KEGG koko:K10601,ko:K11883
KEGG Pathwayko03008,ko04120,ko04141,map03008,map04120,map04141
KEGG ModuleM00403
GOsGO:0000462,GO:0000469,GO:0000478,GO:0003008,GO:0003674,GO:0003676,GO:0003723,GO:0003824,GO:0004518,GO:0004519,GO:0004521,GO:0004540,GO:0005488,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005654,GO:0005730,GO:0005737,GO:0005829,GO:0006139,GO:0006364,GO:0006396,GO:0006725,GO:0006807,GO:0007600,GO:0007601,GO:0008150,GO:0008152,GO:0009987,GO:0010467,GO:0016043,GO:0016070,GO:0016072,GO:0016787,GO:0016788,GO:0019843,GO:0022607,GO:0022613,GO:0030490,GO:0030684,GO:0030688,GO:0031974,GO:0031981,GO:0032501,GO:0032991,GO:0034470,GO:0034622,GO:0034641,GO:0034660,GO:0042254,GO:0042274,GO:0043170,GO:0043226,GO:0043227,GO:0043228,GO:0043229,GO:0043231,GO:0043232,GO:0043233,GO:0043248,GO:0043933,GO:0044085,GO:0044237,GO:0044238,GO:0044422,GO:0044424,GO:0044428,GO:0044444,GO:0044446,GO:0044464,GO:0046483,GO:0050877,GO:0050953,GO:0065003,GO:0070013,GO:0070181,GO:0071704,GO:0071840,GO:0090304,GO:0090305,GO:0090501,GO:0090502,GO:0097159,GO:0140098,GO:1901360,GO:1901363,GO:1990904
EggNOG free text desc.lipopolysaccharide metabolic process
EggNOG OGsCOG1439@1,KOG2463@2759
EC2.3.2.27
COG Functional cat.G
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko00002,ko01000,ko03009,ko03051,ko04121
Hectar predicted targeting categoryother localisation
Ec32 ortholog descriptionNin one binding (NOB1) Zn-ribbon-like
Ec32 orthologEc-27_004620.1
Exons7
Model size2474
Cds size1827
Stop1
Start1
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929567.4957285-UTR-H-elongata_contig10315:3050..33071622929567.4957285-UTR-H-elongata_contig10315:3050..3307Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig10315 3051..3307 -
1691679073.5460851-UTR-H-elongata_contig10315:3050..33071691679073.5460851-UTR-H-elongata_contig10315:3050..3307Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig10315 3051..3307 -
1622929567.5122795-UTR-H-elongata_contig10315:3395..36601622929567.5122795-UTR-H-elongata_contig10315:3395..3660Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig10315 3396..3660 -
1691679073.5675015-UTR-H-elongata_contig10315:3395..36601691679073.5675015-UTR-H-elongata_contig10315:3395..3660Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig10315 3396..3660 -
1622929567.5234098-UTR-H-elongata_contig10315:3678..36861622929567.5234098-UTR-H-elongata_contig10315:3678..3686Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig10315 3679..3686 -
1691679073.582416-UTR-H-elongata_contig10315:3678..36861691679073.582416-UTR-H-elongata_contig10315:3678..3686Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig10315 3679..3686 -
1622929567.5945559-UTR-H-elongata_contig10315:8094..82111622929567.5945559-UTR-H-elongata_contig10315:8094..8211Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig10315 8095..8211 -
1691679073.635938-UTR-H-elongata_contig10315:8094..82111691679073.635938-UTR-H-elongata_contig10315:8094..8211Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig10315 8095..8211 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929567.5332384-CDS-H-elongata_contig10315:3686..38601622929567.5332384-CDS-H-elongata_contig10315:3686..3860Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig10315 3687..3860 -
1691679073.5920553-CDS-H-elongata_contig10315:3686..38601691679073.5920553-CDS-H-elongata_contig10315:3686..3860Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig10315 3687..3860 -
1622929567.549323-CDS-H-elongata_contig10315:4460..47841622929567.549323-CDS-H-elongata_contig10315:4460..4784Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig10315 4461..4784 -
1691679073.6019387-CDS-H-elongata_contig10315:4460..47841691679073.6019387-CDS-H-elongata_contig10315:4460..4784Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig10315 4461..4784 -
1622929567.558624-CDS-H-elongata_contig10315:5288..64731622929567.558624-CDS-H-elongata_contig10315:5288..6473Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig10315 5289..6473 -
1691679073.6096976-CDS-H-elongata_contig10315:5288..64731691679073.6096976-CDS-H-elongata_contig10315:5288..6473Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig10315 5289..6473 -
1622929567.5680177-CDS-H-elongata_contig10315:6986..71201622929567.5680177-CDS-H-elongata_contig10315:6986..7120Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig10315 6987..7120 -
1691679073.6182027-CDS-H-elongata_contig10315:6986..71201691679073.6182027-CDS-H-elongata_contig10315:6986..7120Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig10315 6987..7120 -
1622929567.5790288-CDS-H-elongata_contig10315:8084..80941622929567.5790288-CDS-H-elongata_contig10315:8084..8094Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig10315 8085..8094 -
1691679073.626501-CDS-H-elongata_contig10315:8084..80941691679073.626501-CDS-H-elongata_contig10315:8084..8094Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig10315 8085..8094 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig10315.264.1prot_H-elongata_contig10315.264.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig10315 3687..8094 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig10315.264.1

>prot_H-elongata_contig10315.264.1 ID=prot_H-elongata_contig10315.264.1|Name=mRNA_H-elongata_contig10315.264.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=609bp
MRFAAGFARQTGDLRSLSRVDLRVIALTYMLERQETGGSHLRTAPVPTGT
RVNSKSTGVSATTLDPPREIPQPVDNPKHLDEEAAGVDALPIKTSGEKPD
VEETEATGEINADVGVESLCQAMESAWTEEVVADEGSSKQEASGRVAKQE
ENVMDALGGGGEYLDALGGVMAGTAAGKDVETRLTEGEDEEEEELDGGEV
ANGKHRAEGGREKRFEDDGGVEGVDNHNHGSGDETNGEDDEWEPEGEGSV
EEEASKTPPEAGAADEAVFVAGDFPVLGLGRGDAAASDLTTPLPTSAHSA
SPPAEEERSWSLLARSNPAPFKVPAKQDPTPLPAAAPVEQPVHTGLGNFV
KGPPDGAKGAGTSRILSSAAAFGVSSGGGGGGCEDDEDGVGWVTPSNIKS
HKAAGLGLNGPSQFQRKVPVALASKCRAGCVTTDFAMQNVILQVGLPLLS
LDGMAVRRVRQWILRCAACFKTCTEMGRLFCPVCGNASLDRVSCSVNAKT
GATHVHLRKNRKVNLRGSKYSIPAPNPRKGRFEGDLLLREDQLLTGIWAQ
KAKRKEKDVSSMFGKDITGDVGLTVSRASDIMVGYGRKNPNAARGRERRG
KKGIKNRP*
back to top

mRNA from alignment at H-elongata_contig10315:3051..8211-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig10315.264.1 ID=mRNA_H-elongata_contig10315.264.1|Name=mRNA_H-elongata_contig10315.264.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=5161bp|location=Sequence derived from alignment at H-elongata_contig10315:3051..8211- (Himanthalia elongata Himel1 dioecious)
GCGCAGAATTTCTGGACCGTTCCCGAGGTAGTGTCAGAGATCAGGGATAA GAAGGCTCGGCATCATCTCGAGATACTTCCCTTCGAGCTCAAGCTCAGGG AGCCCTCGGACGAGGCCATGAGATTTGGTAAGAGTCTCGAATGATTGAAT CAGCTCCATTCTTTGAAGACCTAGCTCATACCACGCCCCACGCACATCTT CCTTTTGGTTTTTGAAGACAAAATATTTCGCCCTTGGTGCTCGCCCTGGG ATATCTTGATGCTTGACACATCGTTCTGCCCGGAGTGTGTCTGTTCTGTG TCTAGTCATCATGACGTCATCGCATATAGCAGAGTGAAGGTCAACCGGAT TTCGTGGCCTCCTGCTTGAAGTCAGCTAAACAAGGATGCACGCGCGTTTC CATCCAAAAATATGGTAACGGAAAGTAACCCCCAGGTAGGTTACATGTAG TATTATTAGGGCCGGATTGCGCGGTATTGCGCGGTTGTGTGCAACTTAGT AAAAATGGAAAAAAATATTTTTCCCTGTCTTCGTTCACGGCTGAGAATTT GGTCTCGCGAGACCGGTTCGGCAGTACCGTCCCGCGTCAGCCAGCTCATT CTCTCAACTCAGGTTGAATCTGGTGCGTGCTCCCGGGATACATCTCAATC CTCTCGTTTTCCGTGACGGCGTCCATCTCTACCGTCAGCCGCCATCTGGC TAATCCCGATTTCATGACGTCACGCAATTGCGTACCGATGGCGTTTACCA CCGAGATCCTGCCGACACTGAGCCAGCAGTCCTCAAGGTAGCTTAAGTAA CGGGGTGCAGCCTATTCAGGTAACCCCATGGGCCAATTATTATGCGCCTC TATTTTCCCACTATCAGAGAACGAACACTCGCTTACGACCATCGGGGGTT GATGGTTTCACTGTACCATGTCTTAGCAATGCTTTTCACTCGTTACGTAG CGATTTTCCCGTTTAACCCGTGGTCGAGACCTTGACACCTGACGTAAACA TTGGGCCTCTCCCTCCTCTCTCCCCTATTTTATGTTTTGTCCATCGACGG GGTCTTTTATCTCGTTTATCGTCAACACGATCCTGTTGCAGCGGCCGGCT TCGCACGGCAGACGGGAGACCTTCGGTCCCTCTCGCGGGTAGACTTGAGG GTCATAGCGCTCACGTACATGTTGGAGAGACAGGAGACAGGGGGATCGCA TCTGCGCACCGCACCTGTGCCGACGGTGAGATGCCGAAGAAAACCCGGGG ATCCGGACAAAATGTTATTTTCTTGCTGCAATTGCCTGCCACGCTGCGAG AAGGCATGCACAAAACAGTGTTATTTCGTGTGGCATAGCTGGTATGAGGT TTGAAGTACGTATAGAGTATTGCATAGAGTACCGTTGCAGTGCATCTGGT AGAGGGGACGGAGTGGTACAGCTCCGTTGGTCTGGCGCCAAGCGGCTACT TGAAGGATTGATTTTGATTCCGCTTTCGCCGTTTAGCTTCTCTCCAGATG ATGCAAAGAAAAACCTATTAATGAGTGTTCTTTGTTTAGGGACTCGTGTC TGAAGAGGCGTCTTGAGTAGTCAGGCTATTGACCAAACGTATTAAGGGCG CTCCTTCTGCCCGTTCCAAATCCTCGTGAGTACGACTCGAGTTACTGCTG CACCTCGTCGGTCGTAGAACTACAATGAAGCGCACTACAGCTAGTTTATG ACCATATTTTTGCTTGTTTTTTCGTTGCGCTCTATCAGGGCACGAGGGTA AATAGCAAAAGCACAGGAGTGTCGGCCACCACTCTTGACCCGCCGCGCGA GATCCCGCAGCCGGTCGACAATCCCAAACATCTCGACGAAGAAGCAGCAG GTGTTGACGCCTTACCTATTAAGACTAGTGGTGAAAAGCCAGATGTGGAG GAGACGGAGGCCACGGGAGAGATCAATGCGGACGTGGGCGTGGAGTCTCT CTGCCAAGCGATGGAGTCGGCGTGGACGGAAGAAGTCGTTGCCGACGAGG GCAGTAGCAAGCAAGAGGCGAGTGGGCGGGTTGCCAAGCAAGAGGAGAAC GTGATGGATGCGTTAGGTGGCGGTGGCGAATACTTGGATGCCCTGGGAGG GGTGATGGCGGGCACGGCCGCAGGAAAAGACGTGGAAACACGTTTAACCG AAGGTGAAGATGAAGAAGAGGAGGAACTGGATGGTGGCGAAGTGGCTAAT GGCAAACACAGGGCGGAAGGAGGAAGAGAAAAACGTTTCGAAGACGATGG TGGCGTTGAGGGTGTCGATAACCATAACCATGGTAGTGGTGATGAGACTA ACGGTGAGGACGACGAGTGGGAGCCGGAGGGAGAAGGCAGCGTCGAAGAG GAGGCGTCAAAAACACCTCCGGAAGCAGGAGCGGCGGACGAGGCAGTTTT TGTCGCGGGAGATTTCCCAGTACTGGGACTTGGACGGGGTGACGCCGCTG CCTCTGACTTGACAACCCCTCTACCCACCTCTGCGCATTCCGCATCGCCA CCCGCGGAGGAGGAGCGATCGTGGTCTCTGCTGGCAAGATCGAACCCCGC GCCTTTTAAGGTTCCCGCGAAGCAAGACCCGACGCCATTACCCGCGGCAG CACCCGTCGAGCAGCCTGTCCACACCGGCCTGGGGAATTTTGTGAAAGGC CCTCCTGACGGCGCGAAGGGAGCGGGTACGTCGCGCATCCTCAGCTCGGC TGCGGCGTTCGGTGTGTCTTCTGGCGGAGGCGGAGGTGGCTGCGAAGATG ATGAAGACGGAGTAGGGTGGGTCACCCCGTCCAACATTAAGTCCCACAAG GCGGCCGGTCTCGGGCTCAACGGACCCTCGCAGTTTCAGAGAAAAGTGCC GGTGGCTTTGGCGAGCAAGTGCCGCGCTGGGTGCGTCACGACCGACTTCG CCATGCAGAATGTCATCCTCCAGGTGACGGCAGTGACGCGGACTGCTCCG TGCGGGAGTACGCGTGGTTACCGTGGTGTTTTTGACCGTGTTTATTGCCC TGAACCGGCTCTTGTGACCATCAGGGCTCGAAGATTCCGGAGAGCAGGAG ACCTATTTATTACTTTCAAGTGCTCTGTACTTACTGTGCGTGAGTCTCTA TCTCCCTCGTCTTTCCAGTCATAGCTTTTCATCCCCCCGTTTCCACAATG TTTTCGGCCTCTTTTAGCACAAACAAAACCACTAGTACGTGGTAATCTCT GAAAACAATCCACACTCCCCCCGCCCCCCTGTCTTGGATTTGAACGAAAT CGTTTCAAGTATAATTTGTTGGCCTCTCTGTTGAGGATAAAGGGCGGGAG GGGGCGTTTTTGCGAGGGCTTGCCGTTATCTGCCCTTTCCTAACTCTGCC GGCCAAGTCCTTGCAAACCGGCAACTGACACGGGTTATAATGTAATAACA CAACCGCTGCACGCCGACCATGAAAAGGTGGGCCTTCCGCTCCTGTCTCT GGATGGCATGGCCGTGCGTCGCGTAAGGCAGTGGATCCTGCGCTGCGCCG CCTGCTTCAAGACGTGCACTGAGATGGGTAGGCTATTCTGCCCCGTGTGC GGCAACGCTAGCCTCGATCGCGTTTCATGCTCCGTCAACGCCAAGACGGG GGCGACCCACGTTCACCTCCGGAAGAATCGAAAGGTCAACCTCCGAGGCA GCAAGTACTCCATCCCTGCGCCCAACCCTAGGAAGGGGCGGTTCGAGGGC GACCTCCTGCTGCGGGAGGATCAGCTGTTGACGGGCATTTGGGCCCAAAA GGTATCCGTTGTGTTGTGTGGAGTCTGCTTTTTTACGGGGGGGTGTCTTC ATGTTCTTACCTTTAGTCTTCTTGGGTATTATGGAGCGAGCGCAGAGCGT CGGTTTTGCTTCGGCAATTTAGACTTCGGTACCATTATAGTAATATTTCA CTTGTCTTCCGATGCACCCTTCAAACGTGCTGTTGCCATGTGGTTCAAAT GATCAATCAACCCATCTCTCCCTGGTTAATAAACGCCTTCTCCGATTTTT TTGTAGTAATCCAAAGTTCAGCATTCTTATACTTCAAAAAAATGTTTTTA CTCCACTTCTCACGATTTCAACCCGAACAGGCTGACGTGTTATAACCATT ATTATTTTGAGGTAATGGAATTATGGTGTATATAGGGGGGGAAAAGGTGA AATATATTTCCATTTGCGTATGGCACCGACGACGTCTTCGCAATCAACAT TTATTTTCCCGTACACGTTAGTATATTTTTGAATCGCAGATCATTTAATT TAATTTCCCTTCTTTTATTGTCAGCGATGATCCGCTTTTAATTACAAAAA ATAAAAATAGCACACCCGGTGTTTTTCATTTGGTGGCGGATCCCCTGGCA GGCCAAGCGTAAGGAAAAGGACGTGAGCTCAATGTTCGGAAAAGACATCA CCGGTGATGTCGGCTTGACCGTCTCAAGGGCCTCGGACATCATGGTGGGC TACGGCCGCAAAAACCCCAACGCAGCGCGGGGTCGGGAGCGACGGGGCAA GAAGGGGATAAAAAATAGGCCTTAGTATATAGCAAGAGGGATGCTAATCG GTTGAGTGTGGTCATTACATATGGTATCAGTACAGTATGGTTCAACCGGA TATGGTTGCCGATGCTTGTCGTGTTCAGCTGAAGAGAGAAAATAACTTTT TTTGTACCCCGTTCGCGGAAAGGTCGTGTGACAGTACATGGCATGGCTTT ACGTGCGGTGCAAAACAGGGAGATCAATCGCGCCGAAGCTTAATATTCAA GCAATATATACAAAGGCCTCGGGAAGACGAACGAAATTATGTCTGTATGT TAAGTCAACTTAGCTAGTTTTTTGTTTTTGTTTTTGGGAGGTAATATGGA CAAATCTTGGAGCTCAATATTTTTATAACCCCCCCCCAGCCCATAAAAAT ATAGTTTTACGCCGCGTAGAGGTAACGGGTAACTGCGATCCGTGACAATC GGAAGCCCTACGAATGGTCATCGGGAGCCTCGCGGGATCGTAGAGATACT TCTGAAGCTAGCGGGAACGAGCCATTAATAATTTACTCAATACCGGGCGT TAACATATCGGTGTAGAACACTTTGGGTCACACAAGTCTCATCACGCCCA AGAATGTGACTGGCTCACTTCTCTTTGAGATCAACGGAAGCCACAAACAG GTCGTGCGAGG
back to top

Coding sequence (CDS) from alignment at H-elongata_contig10315:3051..8211-

>mRNA_H-elongata_contig10315.264.1 ID=mRNA_H-elongata_contig10315.264.1|Name=mRNA_H-elongata_contig10315.264.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=3654bp|location=Sequence derived from alignment at H-elongata_contig10315:3051..8211- (Himanthalia elongata Himel1 dioecious)
ATGAGATTTGATGAGATTTGCGGCCGGCTTCGCACGGCAGACGGGAGACC
TTCGGTCCCTCTCGCGGGTAGACTTGAGGGTCATAGCGCTCACGTACATG
TTGGAGAGACAGGAGACAGGGGGATCGCATCTGCGCACCGCACCTGTGCC
GACGCGGCCGGCTTCGCACGGCAGACGGGAGACCTTCGGTCCCTCTCGCG
GGTAGACTTGAGGGTCATAGCGCTCACGTACATGTTGGAGAGACAGGAGA
CAGGGGGATCGCATCTGCGCACCGCACCTGTGCCGACGGGCACGAGGGTA
AATAGCAAAAGCACAGGAGTGTCGGCCACCACTCTTGACCCGCCGCGCGA
GATCCCGCAGCCGGTCGACAATCCCAAACATCTCGACGAAGAAGCAGCAG
GTGTTGACGCCTTACCTATTAAGACTAGTGGTGAAAAGCCAGATGTGGAG
GAGACGGAGGCCACGGGAGAGATCAATGCGGACGTGGGCGTGGAGTCTCT
CTGCCAAGCGATGGAGTCGGCGTGGACGGAAGAAGTCGTTGCCGACGAGG
GCAGTAGCAAGCAAGAGGCGAGTGGGCGGGTTGCCAAGCAAGAGGAGAAC
GTGATGGATGCGTTAGGTGGCGGTGGCGAATACTTGGATGCCCTGGGAGG
GGTGATGGCGGGCACGGCCGCAGGAAAAGACGTGGAAACACGTTTAACCG
AAGGTGAAGATGAAGAAGAGGAGGAACTGGATGGTGGCGAAGTGGCTAAT
GGCAAACACAGGGCGGAAGGAGGAAGAGAAAAACGTTTCGAAGACGATGG
TGGCGTTGAGGGTGTCGATAACCATAACCATGGTAGTGGTGATGAGACTA
ACGGTGAGGACGACGAGTGGGAGCCGGAGGGAGAAGGCAGCGTCGAAGAG
GAGGCGTCAAAAACACCTCCGGAAGCAGGAGCGGCGGACGAGGCAGTTTT
TGTCGCGGGAGATTTCCCAGTACTGGGACTTGGACGGGGTGACGCCGCTG
CCTCTGACTTGACAACCCCTCTACCCACCTCTGCGCATTCCGCATCGCCA
CCCGCGGAGGAGGAGCGATCGTGGTCTCTGCTGGCAAGATCGAACCCCGC
GCCTTTTAAGGTTCCCGCGAAGCAAGACCCGACGCCATTACCCGCGGCAG
CACCCGTCGAGCAGCCTGTCCACACCGGCCTGGGGAATTTTGTGAAAGGC
CCTCCTGACGGCGCGAAGGGAGCGGGTACGTCGCGCATCCTCAGCTCGGC
TGCGGCGTTCGGTGTGTCTTCTGGCGGAGGCGGAGGTGGCTGCGAAGATG
ATGAAGACGGAGTAGGGTGGGTCACCCCGTCCAACATTAAGTCCCACAAG
GCGGCCGGTCTCGGGCTCAACGGACCCTCGCAGTTTCAGAGAAAAGTGCC
GGTGGCTTTGGCGAGCAAGTGCCGCGCTGGGTGCGTCACGACCGACTTCG
CCATGCAGAATGTCATCCTCCAGGGCACGAGGGTAAATAGCAAAAGCACA
GGAGTGTCGGCCACCACTCTTGACCCGCCGCGCGAGATCCCGCAGCCGGT
CGACAATCCCAAACATCTCGACGAAGAAGCAGCAGGTGTTGACGCCTTAC
CTATTAAGACTAGTGGTGAAAAGCCAGATGTGGAGGAGACGGAGGCCACG
GGAGAGATCAATGCGGACGTGGGCGTGGAGTCTCTCTGCCAAGCGATGGA
GTCGGCGTGGACGGAAGAAGTCGTTGCCGACGAGGGCAGTAGCAAGCAAG
AGGCGAGTGGGCGGGTTGCCAAGCAAGAGGAGAACGTGATGGATGCGTTA
GGTGGCGGTGGCGAATACTTGGATGCCCTGGGAGGGGTGATGGCGGGCAC
GGCCGCAGGAAAAGACGTGGAAACACGTTTAACCGAAGGTGAAGATGAAG
AAGAGGAGGAACTGGATGGTGGCGAAGTGGCTAATGGCAAACACAGGGCG
GAAGGAGGAAGAGAAAAACGTTTCGAAGACGATGGTGGCGTTGAGGGTGT
CGATAACCATAACCATGGTAGTGGTGATGAGACTAACGGTGAGGACGACG
AGTGGGAGCCGGAGGGAGAAGGCAGCGTCGAAGAGGAGGCGTCAAAAACA
CCTCCGGAAGCAGGAGCGGCGGACGAGGCAGTTTTTGTCGCGGGAGATTT
CCCAGTACTGGGACTTGGACGGGGTGACGCCGCTGCCTCTGACTTGACAA
CCCCTCTACCCACCTCTGCGCATTCCGCATCGCCACCCGCGGAGGAGGAG
CGATCGTGGTCTCTGCTGGCAAGATCGAACCCCGCGCCTTTTAAGGTTCC
CGCGAAGCAAGACCCGACGCCATTACCCGCGGCAGCACCCGTCGAGCAGC
CTGTCCACACCGGCCTGGGGAATTTTGTGAAAGGCCCTCCTGACGGCGCG
AAGGGAGCGGGTACGTCGCGCATCCTCAGCTCGGCTGCGGCGTTCGGTGT
GTCTTCTGGCGGAGGCGGAGGTGGCTGCGAAGATGATGAAGACGGAGTAG
GGTGGGTCACCCCGTCCAACATTAAGTCCCACAAGGCGGCCGGTCTCGGG
CTCAACGGACCCTCGCAGTTTCAGAGAAAAGTGCCGGTGGCTTTGGCGAG
CAAGTGCCGCGCTGGGTGCGTCACGACCGACTTCGCCATGCAGAATGTCA
TCCTCCAGGTGGGCCTTCCGCTCCTGTCTCTGGATGGCATGGCCGTGCGT
CGCGTAAGGCAGTGGATCCTGCGCTGCGCCGCCTGCTTCAAGACGTGCAC
TGAGATGGGTAGGCTATTCTGCCCCGTGTGCGGCAACGCTAGCCTCGATC
GCGTTTCATGCTCCGTCAACGCCAAGACGGGGGCGACCCACGTTCACCTC
CGGAAGAATCGAAAGGTCAACCTCCGAGGCAGCAAGTACTCCATCCCTGC
GCCCAACCCTAGGAAGGGGCGGTTCGAGGGCGACCTCCTGCTGCGGGAGG
ATCAGCTGTTGACGGGCATTTGGGCCCAAAAGGTGGGCCTTCCGCTCCTG
TCTCTGGATGGCATGGCCGTGCGTCGCGTAAGGCAGTGGATCCTGCGCTG
CGCCGCCTGCTTCAAGACGTGCACTGAGATGGGTAGGCTATTCTGCCCCG
TGTGCGGCAACGCTAGCCTCGATCGCGTTTCATGCTCCGTCAACGCCAAG
ACGGGGGCGACCCACGTTCACCTCCGGAAGAATCGAAAGGTCAACCTCCG
AGGCAGCAAGTACTCCATCCCTGCGCCCAACCCTAGGAAGGGGCGGTTCG
AGGGCGACCTCCTGCTGCGGGAGGATCAGCTGTTGACGGGCATTTGGGCC
CAAAAGGCCAAGCGTAAGGAAAAGGACGTGAGCTCAATGTTCGGAAAAGA
CATCACCGGTGATGTCGGCTTGACCGTCTCAAGGGCCTCGGACATCATGG
TGGGCTACGGCCGCAAAAACCCCAACGCAGCGCGGGGTCGGGAGCGACGG
GGCAAGAAGGGGATAAAAAATAGGCCTTAGGCCAAGCGTAAGGAAAAGGA
CGTGAGCTCAATGTTCGGAAAAGACATCACCGGTGATGTCGGCTTGACCG
TCTCAAGGGCCTCGGACATCATGGTGGGCTACGGCCGCAAAAACCCCAAC
GCAGCGCGGGGTCGGGAGCGACGGGGCAAGAAGGGGATAAAAAATAGGCC
TTAG
back to top