mRNA_H-elongata_contig100216.26.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig100216.26.1
Unique NamemRNA_H-elongata_contig100216.26.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
[Close]
BLAST of mRNA_H-elongata_contig100216.26.1 vs. uniprot
Match: D8LBK7_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LBK7_ECTSI)

HSP 1 Score: 133 bits (335), Expect = 1.010e-34
Identity = 64/74 (86.49%), Postives = 70/74 (94.59%), Query Frame = 1 
Query:    1 RPLFIREAPGIVHAIYEGGLKYTPLAVLSRPVAGTRNNTLVVTLPGSVKAVKENLGSVAPLLPRIVNLLQGHQC 222
            RPL  REAPG+VHAIY+GGLK+TPLAVLSRPVAGTRNNTLVVTLPGSVKAVKENLGS+ PLLPRIVNLL+G+ C
Sbjct:  615 RPLLHREAPGVVHAIYQGGLKFTPLAVLSRPVAGTRNNTLVVTLPGSVKAVKENLGSMVPLLPRIVNLLKGNPC 688
[Close]
BLAST of mRNA_H-elongata_contig100216.26.1 vs. uniprot
Match: A0A6H5K7N4_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K7N4_9PHAE)

HSP 1 Score: 133 bits (335), Expect = 1.250e-34
Identity = 64/74 (86.49%), Postives = 70/74 (94.59%), Query Frame = 1 
Query:    1 RPLFIREAPGIVHAIYEGGLKYTPLAVLSRPVAGTRNNTLVVTLPGSVKAVKENLGSVAPLLPRIVNLLQGHQC 222
            RPL  REAPG+VHAIY+GGLK+TPLAVLSRPVAGTRNNTLVVTLPGSVKAVKENLGS+ PLLPRIVNLL+G+ C
Sbjct:  788 RPLLHREAPGVVHAIYQGGLKFTPLAVLSRPVAGTRNNTLVVTLPGSVKAVKENLGSLVPLLPRIVNLLKGNPC 861
[Close]
BLAST of mRNA_H-elongata_contig100216.26.1 vs. uniprot
Match: A0A835YS15_9STRA (MoeA N-terminal region-domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YS15_9STRA)

HSP 1 Score: 120 bits (302), Expect = 2.900e-30
Identity = 58/73 (79.45%), Postives = 65/73 (89.04%), Query Frame = 1 
Query:    4 PLFIREAPGIVHAIYEGGLKYTPLAVLSRPVAGTRNNTLVVTLPGSVKAVKENLGSVAPLLPRIVNLLQGHQC 222
            PL  R APGIVHAIY+ GLK+TPLAVLSRPVAGTR NTLVVTLPGSVKAV EN+ ++ PLLPRIVNLLQG++C
Sbjct:  550 PLLQRHAPGIVHAIYQAGLKHTPLAVLSRPVAGTRGNTLVVTLPGSVKAVNENMTALVPLLPRIVNLLQGNEC 622
[Close]
BLAST of mRNA_H-elongata_contig100216.26.1 vs. uniprot
Match: A0A812RY17_SYMMI (Gphn protein (Fragment) n=1 Tax=Symbiodinium microadriaticum TaxID=2951 RepID=A0A812RY17_SYMMI)

HSP 1 Score: 102 bits (254), Expect = 1.650e-26
Identity = 48/74 (64.86%), Postives = 59/74 (79.73%), Query Frame = 1 
Query:    1 RPLFIREAPGIVHAIYEGGLKYTPLAVLSRPVAGTRNNTLVVTLPGSVKAVKENLGSVAPLLPRIVNLLQGHQC 222
            RPLF REAP +  A+   GLK+TPLAVLSRPV GTRN TL+ TLPGSVKAV+EN+ ++ PLLPRI+NL+   +C
Sbjct:   39 RPLFHREAPAVAQALINEGLKHTPLAVLSRPVVGTRNETLICTLPGSVKAVRENIQALKPLLPRIMNLISTGKC 112
[Close]
BLAST of mRNA_H-elongata_contig100216.26.1 vs. uniprot
Match: A0A7S3XZE9_HETAK (Hypothetical protein n=1 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A7S3XZE9_HETAK)

HSP 1 Score: 96.3 bits (238), Expect = 9.790e-24
Identity = 47/73 (64.38%), Postives = 56/73 (76.71%), Query Frame = 1 
Query:    4 PLFIREAPGIVHAIYEGGLKYTPLAVLSRPVAGTRNNTLVVTLPGSVKAVKENLGSVAPLLPRIVNLLQGHQC 222
            PL  REAPG+V A+ + G ++TPLAVLSRPVAGTR  TLV T+PGS KAVKEN+  + PL+PRI NLL   QC
Sbjct:   78 PLLHREAPGLVFALMKKGTEHTPLAVLSRPVAGTRGRTLVFTVPGSSKAVKENMEVMIPLIPRICNLLSDRQC 150
[Close]
BLAST of mRNA_H-elongata_contig100216.26.1 vs. uniprot
Match: A0A7S2V159_9STRA (Hypothetical protein n=1 Tax=Fibrocapsa japonica TaxID=94617 RepID=A0A7S2V159_9STRA)

HSP 1 Score: 102 bits (253), Expect = 1.490e-23
Identity = 50/74 (67.57%), Postives = 59/74 (79.73%), Query Frame = 1 
Query:    1 RPLFIREAPGIVHAIYEGGLKYTPLAVLSRPVAGTRNNTLVVTLPGSVKAVKENLGSVAPLLPRIVNLLQGHQC 222
            RP+  REAPG+V A+ + G K TPLAVLSRPVAGTR  +L+VTLPGS KAVKENL ++ PLLPRIVNLL  + C
Sbjct:  658 RPILHREAPGLVFALLQEGTKNTPLAVLSRPVAGTREKSLIVTLPGSTKAVKENLVALIPLLPRIVNLLNDNAC 731
[Close]
BLAST of mRNA_H-elongata_contig100216.26.1 vs. uniprot
Match: W7TR83_9STRA (Molybdenum cofactor biosynthesis protein n=1 Tax=Nannochloropsis gaditana TaxID=72520 RepID=W7TR83_9STRA)

HSP 1 Score: 91.7 bits (226), Expect = 1.810e-22
Identity = 45/74 (60.81%), Postives = 54/74 (72.97%), Query Frame = 1 
Query:    1 RPLFIREAPGIVHAIYEGGLKYTPLAVLSRPVAGTRNNTLVVTLPGSVKAVKENLGSVAPLLPRIVNLLQGHQC 222
            RPL  +EAPG+V  I E G K+TP AVLSRPVAG R  T +VTLPGS KAVKENL ++ PLLP++  LL+   C
Sbjct:   26 RPLIDKEAPGMVWRIMEVGTKHTPFAVLSRPVAGVRGGTFIVTLPGSPKAVKENLDTLLPLLPKVFGLLKTATC 99
[Close]
BLAST of mRNA_H-elongata_contig100216.26.1 vs. uniprot
Match: I2CRJ2_NANGC (Gephyrin (Fragment) n=1 Tax=Nannochloropsis gaditana (strain CCMP526) TaxID=1093141 RepID=I2CRJ2_NANGC)

HSP 1 Score: 91.7 bits (226), Expect = 3.350e-21
Identity = 45/74 (60.81%), Postives = 54/74 (72.97%), Query Frame = 1 
Query:    1 RPLFIREAPGIVHAIYEGGLKYTPLAVLSRPVAGTRNNTLVVTLPGSVKAVKENLGSVAPLLPRIVNLLQGHQC 222
            RPL  +EAPG+V  I E G K+TP AVLSRPVAG R  T +VTLPGS KAVKENL ++ PLLP++  LL+   C
Sbjct:  144 RPLIDKEAPGMVWRIMEVGTKHTPFAVLSRPVAGVRGGTFIVTLPGSPKAVKENLDTLLPLLPKVFGLLKTATC 217
[Close]
BLAST of mRNA_H-elongata_contig100216.26.1 vs. uniprot
Match: A0A4D9D018_9STRA (Molybdopterin adenylyltransferase n=1 Tax=Nannochloropsis salina CCMP1776 TaxID=1027361 RepID=A0A4D9D018_9STRA)

HSP 1 Score: 91.7 bits (226), Expect = 1.300e-20
Identity = 45/74 (60.81%), Postives = 54/74 (72.97%), Query Frame = 1 
Query:    1 RPLFIREAPGIVHAIYEGGLKYTPLAVLSRPVAGTRNNTLVVTLPGSVKAVKENLGSVAPLLPRIVNLLQGHQC 222
            RPL  +EAPG+V  I E G K+TP AVLSRPVAG R  T +VTLPGS KAVKENL ++ PLLP++  LL+   C
Sbjct:  221 RPLIDKEAPGMVWRIMEVGTKHTPFAVLSRPVAGVRGGTFIVTLPGSPKAVKENLDTLLPLLPKVFGLLKTATC 294
[Close]
BLAST of mRNA_H-elongata_contig100216.26.1 vs. uniprot
Match: A0A5C3Q6D6_9AGAR (Molybdopterin adenylyltransferase n=1 Tax=Pterula gracilis TaxID=1884261 RepID=A0A5C3Q6D6_9AGAR)

HSP 1 Score: 90.1 bits (222), Expect = 2.320e-19
Identity = 48/72 (66.67%), Postives = 55/72 (76.39%), Query Frame = 1 
Query:    4 PLFIREAPGIVHAIYEGGLKYTPLAVLSRPVAGTRNNTLVVTLPGSVKAVKENLGS--VAPLLPRIVNLLQG 213
            PL  R+APG+V  I E GLK+TPLA LSRPVAGTR NTLVVTLPGSVKAVKENL +  V   L   V+L++G
Sbjct:   89 PLLERQAPGLVQLIMEAGLKHTPLAALSRPVAGTRGNTLVVTLPGSVKAVKENLAALLVRGFLEHAVDLVRG 160
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig100216.26.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D8LBK7_ECTSI1.010e-3486.49Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A6H5K7N4_9PHAE1.250e-3486.49Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A835YS15_9STRA2.900e-3079.45MoeA N-terminal region-domain-containing protein n... [more]
A0A812RY17_SYMMI1.650e-2664.86Gphn protein (Fragment) n=1 Tax=Symbiodinium micro... [more]
A0A7S3XZE9_HETAK9.790e-2464.38Hypothetical protein n=1 Tax=Heterosigma akashiwo ... [more]
A0A7S2V159_9STRA1.490e-2367.57Hypothetical protein n=1 Tax=Fibrocapsa japonica T... [more]
W7TR83_9STRA1.810e-2260.81Molybdenum cofactor biosynthesis protein n=1 Tax=N... [more]
I2CRJ2_NANGC3.350e-2160.81Gephyrin (Fragment) n=1 Tax=Nannochloropsis gadita... [more]
A0A4D9D018_9STRA1.300e-2060.81Molybdopterin adenylyltransferase n=1 Tax=Nannochl... [more]
A0A5C3Q6D6_9AGAR2.320e-1966.67Molybdopterin adenylyltransferase n=1 Tax=Pterula ... [more]

Pages

back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig100216contigH-elongata_contig100216:1823..2047 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score133.7
Seed ortholog evalue3.7e-29
Seed eggNOG ortholog2880.D8LBK7
Preferred nameCNX1E
KEGG rclassRC00002,RC03462
KEGG koko:K03750,ko:K13168,ko:K15376
KEGG ReactionR09726,R09735
KEGG Pathwayko00790,ko01100,ko04727,map00790,map01100,map04727
GOsGO:0003674,GO:0003824,GO:0005488,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0006139,GO:0006163,GO:0006464,GO:0006725,GO:0006732,GO:0006753,GO:0006777,GO:0006793,GO:0006796,GO:0006807,GO:0007154,GO:0007165,GO:0008150,GO:0008152,GO:0008940,GO:0009058,GO:0009108,GO:0009116,GO:0009117,GO:0009119,GO:0009141,GO:0009144,GO:0009150,GO:0009199,GO:0009205,GO:0009259,GO:0009719,GO:0009725,GO:0009733,GO:0009734,GO:0009755,GO:0009987,GO:0010033,GO:0010035,GO:0010038,GO:0016491,GO:0016661,GO:0016740,GO:0016772,GO:0016779,GO:0018130,GO:0018315,GO:0019538,GO:0019637,GO:0019693,GO:0019720,GO:0023052,GO:0030151,GO:0032324,GO:0032870,GO:0034641,GO:0036211,GO:0042040,GO:0042221,GO:0042278,GO:0043167,GO:0043169,GO:0043170,GO:0043412,GO:0043545,GO:0044237,GO:0044238,GO:0044249,GO:0044260,GO:0044267,GO:0044281,GO:0044424,GO:0044444,GO:0044464,GO:0046039,GO:0046128,GO:0046483,GO:0046872,GO:0046914,GO:0050789,GO:0050794,GO:0050896,GO:0051186,GO:0051188,GO:0051189,GO:0051716,GO:0055086,GO:0055114,GO:0061598,GO:0061599,GO:0065007,GO:0070566,GO:0070887,GO:0071310,GO:0071365,GO:0071495,GO:0071704,GO:0072521,GO:0090407,GO:1901068,GO:1901135,GO:1901360,GO:1901362,GO:1901564,GO:1901566,GO:1901576,GO:1901657
EggNOG free text desc.molybdopterin molybdotransferase activity
EggNOG OGsCOG0303@1,KOG2371@2759
EC2.10.1.1,2.7.7.75
COG Functional cat.H
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko01000,ko03041
Hectar predicted targeting categoryother localisation
Exons1
Model size225
Cds size225
Stop1
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929544.7248042-CDS-H-elongata_contig100216:1822..20471622929544.7248042-CDS-H-elongata_contig100216:1822..2047Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig100216 1823..2047 -
1691679062.7022057-CDS-H-elongata_contig100216:1822..20471691679062.7022057-CDS-H-elongata_contig100216:1822..2047Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig100216 1823..2047 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig100216.26.1prot_H-elongata_contig100216.26.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig100216 1823..2047 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig100216.26.1

>prot_H-elongata_contig100216.26.1 ID=prot_H-elongata_contig100216.26.1|Name=mRNA_H-elongata_contig100216.26.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=75bp
RPLFIREAPGIVHAIYEGGLKYTPLAVLSRPVAGTRNNTLVVTLPGSVKA
VKENLGSVAPLLPRIVNLLQGHQC*
back to top

mRNA from alignment at H-elongata_contig100216:1823..2047-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig100216.26.1 ID=mRNA_H-elongata_contig100216.26.1|Name=mRNA_H-elongata_contig100216.26.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=225bp|location=Sequence derived from alignment at H-elongata_contig100216:1823..2047- (Himanthalia elongata Himel1 dioecious)
CGTCCTCTGTTCATTAGGGAAGCACCGGGAATCGTGCACGCGATCTACGA
GGGTGGTCTGAAGTATACCCCCCTAGCAGTGCTCTCTCGTCCAGTCGCCG
GCACGCGCAACAACACCCTGGTGGTTACTCTTCCTGGCAGCGTCAAGGCT
GTTAAAGAGAATCTTGGGTCGGTGGCCCCGCTGCTTCCACGCATTGTGAA
CTTGCTTCAGGGACACCAGTGTTAG
back to top

Coding sequence (CDS) from alignment at H-elongata_contig100216:1823..2047-

>mRNA_H-elongata_contig100216.26.1 ID=mRNA_H-elongata_contig100216.26.1|Name=mRNA_H-elongata_contig100216.26.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=450bp|location=Sequence derived from alignment at H-elongata_contig100216:1823..2047- (Himanthalia elongata Himel1 dioecious)
CGTCCTCTGTTCATTAGGGAAGCACCGGGAATCGTGCACGCGATCTACGA
GGGTGGTCTGAAGTATACCCCCCTAGCAGTGCTCTCTCGTCCAGTCGCCG
GCACGCGCAACAACACCCTGGTGGTTACTCTTCCTGGCAGCGTCAAGGCT
GTTAAAGAGAATCTTGGGTCGGTGGCCCCGCTGCTTCCACGCATTGTGAA
CTTGCTTCAGGGACACCAGTGTTAGCGTCCTCTGTTCATTAGGGAAGCAC
CGGGAATCGTGCACGCGATCTACGAGGGTGGTCTGAAGTATACCCCCCTA
GCAGTGCTCTCTCGTCCAGTCGCCGGCACGCGCAACAACACCCTGGTGGT
TACTCTTCCTGGCAGCGTCAAGGCTGTTAAAGAGAATCTTGGGTCGGTGG
CCCCGCTGCTTCCACGCATTGTGAACTTGCTTCAGGGACACCAGTGTTAG
back to top