prot_H-elongata_contig136895.2599.1 (polypeptide) Himanthalia elongata Himel1 dioecious

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_H-elongata_contig136895.2599.1
Unique Nameprot_H-elongata_contig136895.2599.1
Typepolypeptide
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Sequence length189
Homology
BLAST of mRNA_H-elongata_contig136895.2599.1 vs. uniprot
Match: A0A6H5KFS5_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KFS5_9PHAE)

HSP 1 Score: 160 bits (405), Expect = 5.710e-44
Identity = 122/239 (51.05%), Postives = 145/239 (60.67%), Query Frame = 0
Query:    2 RDLIAGGTWLGVNRSGKFATVTNIPSAWDDLVAFVE--GTTTSMRAXXXXXXXXXXXXXXXXXXXXKRREG-----------------------------------------------AWAFSLGLLCAGIMTA-SVGLAMA-ATAALRRSRGRLVSEFLKGDESAEQYCARIFKDRWRYAGFNLVLVDPGSAWVLNNRSEEVIMRLPHGFYGVSNASLDTPWTKMLYGKSRVLQVLLR 189
            RDL+AGGTWLGV+RSGKFAT+TN+ S W+ ++  V   G      AXXXXXXXXXXXXXXXXXXXX                                                     W ++L    AG++TA SV LA+A A    R+SRG LV++FLKGDE AE YCAR+ K+R R+AGFNLVL DP  AW+L+NR E  I RLPHGFYG+SN +LD PW KML+GKSRVLQVLLR
Sbjct:   64 RDLVAGGTWLGVSRSGKFATLTNVFSTWESMLEVVALGGWANKAAAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXPSLGFSTPAGSSSSSSLLGWLYAL-CAAAGLVTAASVPLAVAVARIKARKSRGGLVADFLKGDEDAETYCARLSKERRRFAGFNLVLSDPSGAWLLSNRDEAGITRLPHGFYGISNDTLDKPWAKMLHGKSRVLQVLLR 301          
BLAST of mRNA_H-elongata_contig136895.2599.1 vs. uniprot
Match: D8LBN3_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LBN3_ECTSI)

HSP 1 Score: 146 bits (368), Expect = 1.180e-39
Identity = 113/224 (50.45%), Postives = 136/224 (60.71%), Query Frame = 0
Query:    1 GRDLIAGGTWLGVNRSGKFATVTNIPSAWDDLVAFVE--GTTTSMRAXXXXXXXXXXXXXXXXXXXXKRREGAWAF-------------------------SLGL------------------LCA--GIMTA-SVGLAMA-ATAALRRSRGRLVSEFLKGDESAEQYCARIFKDRWRYAGFNLVLVDPGSAWVLNNRSEEVIMRLPHGFYGVSNASLDTPWTK 175
            GRDL+AGGTWLGV+RSGKFAT+TN+ S W++++  V   G    + A  XXXXXXXXXXXXXXXXX    E   +                          SLGL                  LCA  G++TA SV LA+A A A  R+SRG LV++FLKGDE AE YC+R+ K+R RYAGFNLVL DP  AW+L+NR E  I RLPHGFYG+SN +LD PW K
Sbjct:   55 GRDLVAGGTWLGVSRSGKFATLTNVSSTWENVLEDVTLGGWANKVAAVAXXXXXXXXXXXXXXXXXRAGHENGISXXXXXXXXXXXXXXXXXXXXXXXXVSSLGLSRPAGSSLSSSSLGWLYALCAAAGLVTAASVPLAVAVARAKARKSRGGLVADFLKGDEDAETYCSRLSKERRRYAGFNLVLSDPSGAWLLSNRDEAGITRLPHGFYGISNDTLDKPWAK 278          
BLAST of mRNA_H-elongata_contig136895.2599.1 vs. uniprot
Match: A0A353MA24_9DELT (Uncharacterized protein n=2 Tax=Geobacteraceae TaxID=213422 RepID=A0A353MA24_9DELT)

HSP 1 Score: 87.4 bits (215), Expect = 1.240e-17
Identity = 59/187 (31.55%), Postives = 85/187 (45.45%), Query Frame = 0
Query:    1 GRDLIAGGTWLGVNRSGKFATVTNIPSAWDDLVAFVEGTTTSMRAXXXXXXXXXXXXXXXXXXXXKRREGAWAFSLGLLCAGIMTASVGLAMAATAALRRSRGRLVSEFLKGDESAEQYCARIFKDRWRYAGFNLVLVDPGSAWVLNNRSEEVIMRLPHGFYGVSNASLDTPWTKMLYGKSRVLQVL 187
            GRDL+ GGTWLGV  +G+ A +TN        +  V G                                                             RSRG LVSEFLKG+ +AE+Y  R+      Y+G+NL+L DPG  +  +N+S+E++  +P G +G+SN  L+TPW K+L GK+ + +VL
Sbjct:   45 GRDLVHGGTWLGVTSTGRIAALTNYRQP---KLPGVHG-------------------------------------------------------------RSRGELVSEFLKGETTAEEYLERLRGKGVHYSGYNLLLGDPGRLYCYSNKSDEIVT-IPPGVHGLSNHLLNTPWPKVLRGKASLARVL 166          
BLAST of mRNA_H-elongata_contig136895.2599.1 vs. uniprot
Match: UPI001C7F1B92 (NRDE family protein n=1 Tax=Pseudomonas sp. NCCP-436 TaxID=2842481 RepID=UPI001C7F1B92)

HSP 1 Score: 85.9 bits (211), Expect = 4.540e-17
Identity = 57/187 (30.48%), Postives = 82/187 (43.85%), Query Frame = 0
Query:    1 GRDLIAGGTWLGVNRSGKFATVTNIPSAWDDLVAFVEGTTTSMRAXXXXXXXXXXXXXXXXXXXXKRREGAWAFSLGLLCAGIMTASVGLAMAATAALRRSRGRLVSEFLKGDESAEQYCARIFKDRWRYAGFNLVLVDPGSAWVLNNRSEEVIMRLPHGFYGVSNASLDTPWTKMLYGKSRVLQVL 187
            GRDL AGGTWLG+ RSG+FA +TNI             T+  +R+                                                      RSRG L S FL+GD + + Y  ++ +D  +YAGFNL+L D    W  N++  +   +L  G YG++NASLDTPW K+L  +  + + +
Sbjct:   45 GRDLEAGGTWLGITRSGRFAALTNI-----------RDTSQPLRS------------------------------------------------------RSRGELTSTFLRGDCTPQTYLQQVMEDAQQYAGFNLLLGDSRQLWHFNSQEGQP-RQLNSGVYGLANASLDTPWPKLLQARDALARAI 165          
BLAST of mRNA_H-elongata_contig136895.2599.1 vs. uniprot
Match: B7S3D3_9GAMM (Uncharacterized protein n=1 Tax=marine gamma proteobacterium HTCC2148 TaxID=247634 RepID=B7S3D3_9GAMM)

HSP 1 Score: 84.7 bits (208), Expect = 1.320e-16
Identity = 63/190 (33.16%), Postives = 79/190 (41.58%), Query Frame = 0
Query:    1 GRDLIAGGTWLGVNRSGKFATVTNIPSAWDDLVAFVEGTTTSMRAXXXXXXXXXXXXXXXXXXXXKRREGAWAFSLGLLCAGIMTASVGLAMAATAALRRSRGRLVSEFLKGDESAEQYCARIFKDRWRYAGFNLVLVDPGSAWVLNNR---SEEVIMRLPHGFYGVSNASLDTPWTKMLYGKSRVLQVL 187
            GRD  AGG+W+GVNRSG FA VTN                                                                      T A  RSRG LV  +L+GD SA+QY  ++      YAGFNL+L D    W ++N    SE+   RL  G YG+SNASLDTPW K+  GK  + ++L
Sbjct:   45 GRDRQAGGSWMGVNRSGHFAAVTNSRDPEQ----------------------------------------------------------------TKAAERSRGELVLGYLQGDLSAQQYLDQLSLRAGAYAGFNLLLGDREDLWYVSNSGPSSEQSPRRLTPGIYGLSNASLDTPWPKVQRGKQVMAELL 170          
BLAST of mRNA_H-elongata_contig136895.2599.1 vs. uniprot
Match: A0A1I1V3U4_9DELT (Uncharacterized conserved protein, contains NRDE domain n=1 Tax=Nannocystis exedens TaxID=54 RepID=A0A1I1V3U4_9DELT)

HSP 1 Score: 84.0 bits (206), Expect = 2.520e-16
Identity = 43/88 (48.86%), Postives = 60/88 (68.18%), Query Frame = 0
Query:  100 RSRGRLVSEFLKGDESAEQYCARIFKDRWRYAGFNLVLVDPGSAWVLNNRSEEVIMRLPHGFYGVSNASLDTPWTKMLYGKSRVLQVL 187
            RSRG LV+++L+G +    Y A I  +R  YAGFNLV  DP   W +NN++ E + RL  G YG+SNA+LDTPW K++ GKS + ++L
Sbjct:   80 RSRGALVADYLRGTDDPGAYVAAIAGER--YAGFNLVCGDPHGVWYMNNKTGERL-RLAPGLYGISNAALDTPWPKVVRGKSGLARLL 164          
BLAST of mRNA_H-elongata_contig136895.2599.1 vs. uniprot
Match: A0A5C8YBH3_PSEME (Uncharacterized protein n=2 Tax=Pseudomonas TaxID=286 RepID=A0A5C8YBH3_PSEME)

HSP 1 Score: 83.2 bits (204), Expect = 4.450e-16
Identity = 60/180 (33.33%), Postives = 74/180 (41.11%), Query Frame = 0
Query:    1 GRDLIAGGTWLGVNRSGKFATVTNIPSAWDDLVAFVEGTTTSMRAXXXXXXXXXXXXXXXXXXXXKRREGAWAFSLGLLCAGIMTASVGLAMAATAALRRSRGRLVSEFLKGDESAEQYCARIFKDRWRYAGFNLVLVDPGSAWVLNNRSEEVIMRLPHGFYGVSNASLDTPWTKMLYGK 180
            GRDL AGGTWLG+   G+FA +TNI                                        + + G                             RSRG L +E+L G  SA  Y  RI +D   YAGFNL+L D    W  N+R E    +L  G YG+SNASLDTPW K+LY +
Sbjct:   45 GRDLQAGGTWLGITAEGRFAALTNIRDP-------------------------------------RLKAGP----------------------------RSRGALTTEYLLGQASAPAYLDRIMRDAADYAGFNLLLGDRQQLWHFNSR-EGRPRQLRSGIYGMSNASLDTPWPKLLYAR 158          
BLAST of mRNA_H-elongata_contig136895.2599.1 vs. uniprot
Match: W6R1G9_PSEP5 (Ser/Thr-rich protein T10 in DGCR region n=15 Tax=Pseudomonas TaxID=286 RepID=W6R1G9_PSEP5)

HSP 1 Score: 82.0 bits (201), Expect = 1.210e-15
Identity = 57/177 (32.20%), Postives = 74/177 (41.81%), Query Frame = 0
Query:    1 GRDLIAGGTWLGVNRSGKFATVTNIPSAWDDLVAFVEGTTTSMRAXXXXXXXXXXXXXXXXXXXXKRREGAWAFSLGLLCAGIMTASVGLAMAATAALRRSRGRLVSEFLKGDESAEQYCARIFKDRWRYAGFNLVLVDPGSAWVLNNRSEEVIMRLPHGFYGVSNASLDTPWTKML 177
            GRDL AGGTWLGV   G+FA +TNI                                        +++ G                             RSRG L +++L G ESA  Y  RI +D   YAGFNL++ D    W  N++  +   +L  G YG+SNASLDTPW K+L
Sbjct:   45 GRDLQAGGTWLGVTAQGRFAALTNIRDP-------------------------------------RQKAGP----------------------------RSRGALTADYLLGQESAPAYLDRIMRDATEYAGFNLLVGDAQQLWHFNSQEGQP-RQLESGIYGLSNASLDTPWPKLL 155          
BLAST of mRNA_H-elongata_contig136895.2599.1 vs. uniprot
Match: A0A418XJA8_9PSED (Uncharacterized protein n=1 Tax=Pseudomonas cavernicola TaxID=2320866 RepID=A0A418XJA8_9PSED)

HSP 1 Score: 82.0 bits (201), Expect = 1.220e-15
Identity = 62/187 (33.16%), Postives = 80/187 (42.78%), Query Frame = 0
Query:    1 GRDLIAGGTWLGVNRSGKFATVTNIPSAWDDLVAFVEGTTTSMRAXXXXXXXXXXXXXXXXXXXXKRREGAWAFSLGLLCAGIMTASVGLAMAATAALRRSRGRLVSEFLKGDESAEQYCARIFKDRWRYAGFNLVLVDPGSAWVLNNRSEEVIMRLPHGFYGVSNASLDTPWTKMLYGKSRVLQVL 187
            GRDL AGGTWLGV   G+FA +TNI                                         R  G               A  G          RSRG LV++FL+G ++ E Y A I +    YAGFNL++ +    W LN+R E   +RL  G YG+SNA LDTPW K+   K+ + + L
Sbjct:   45 GRDLEAGGTWLGVGPQGRFAALTNI-----------------------------------------RNPGQ--------------AQGG----------RSRGELVAQFLRGQQTPEAYLAAIAERASEYAGFNLLVGNSHELWHLNSR-EGAPLRLGSGLYGLSNAGLDTPWPKVQRAKAALAECL 165          
BLAST of mRNA_H-elongata_contig136895.2599.1 vs. uniprot
Match: UPI001F403870 (NRDE family protein n=1 Tax=Pseudomonas sp. JM10B5a TaxID=2912055 RepID=UPI001F403870)

HSP 1 Score: 80.9 bits (198), Expect = 3.580e-15
Identity = 56/176 (31.82%), Postives = 77/176 (43.75%), Query Frame = 0
Query:    1 GRDLIAGGTWLGVNRSGKFATVTNIPSAWDDLVAFVEGTTTSMRAXXXXXXXXXXXXXXXXXXXXKRREGAWAFSLGLLCAGIMTASVGLAMAATAALRRSRGRLVSEFLKGDESAEQYCARIFKDRWRYAGFNLVLVDPGSAWVLNNRSEEVIMRLPHGFYGVSNASLDTPWTKM 176
            GRDL+AGGTW+G+  +G+FA +TNI                                         R +G     LG                     RRSRG+LV +FL+GD+S E Y   +      Y GFNL++ D  + W LN++ +    RL  G YG+SNA L+TPW K+
Sbjct:   45 GRDLLAGGTWMGITPAGRFAALTNI-----------------------------------------RADGQ---PLG---------------------RRSRGKLVEDFLRGDDSPEGYLGELAGQLQDYTGFNLLVGDGQALWYLNSQ-QGAPQRLESGVYGLSNAGLNTPWPKL 154          
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig136895.2599.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6H5KFS5_9PHAE5.710e-4451.05Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D8LBN3_ECTSI1.180e-3950.45Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A353MA24_9DELT1.240e-1731.55Uncharacterized protein n=2 Tax=Geobacteraceae Tax... [more]
UPI001C7F1B924.540e-1730.48NRDE family protein n=1 Tax=Pseudomonas sp. NCCP-4... [more]
B7S3D3_9GAMM1.320e-1633.16Uncharacterized protein n=1 Tax=marine gamma prote... [more]
A0A1I1V3U4_9DELT2.520e-1648.86Uncharacterized conserved protein, contains NRDE d... [more]
A0A5C8YBH3_PSEME4.450e-1633.33Uncharacterized protein n=2 Tax=Pseudomonas TaxID=... [more]
W6R1G9_PSEP51.210e-1532.20Ser/Thr-rich protein T10 in DGCR region n=15 Tax=P... [more]
A0A418XJA8_9PSED1.220e-1533.16Uncharacterized protein n=1 Tax=Pseudomonas cavern... [more]
UPI001F4038703.580e-1531.82NRDE family protein n=1 Tax=Pseudomonas sp. JM10B5... [more]

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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR008551Transport and Golgi organisation protein 2PFAMPF05742TANGO2coord: 1..186
e-value: 4.4E-21
score: 76.1
IPR008551Transport and Golgi organisation protein 2PANTHERPTHR17985SER/THR-RICH PROTEIN T10 IN DGCR REGIONcoord: 1..187
NoneNo IPR availablePHOBIUSCYTOPLASMIC_DOMAINCytoplasmic domaincoord: 1..44
NoneNo IPR availablePHOBIUSCYTOPLASMIC_DOMAINCytoplasmic domaincoord: 99..189
NoneNo IPR availablePHOBIUSNON_CYTOPLASMIC_DOMAINNon cytoplasmic domaincoord: 66..70
NoneNo IPR availablePHOBIUSTRANSMEMBRANETransmembrane regioncoord: 45..65
NoneNo IPR availablePHOBIUSTRANSMEMBRANETransmembrane regioncoord: 71..98
NoneNo IPR availableTMHMMTMhelixcoord: 43..65
NoneNo IPR availableTMHMMTMhelixcoord: 72..94

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig136895contigH-elongata_contig136895:387..1641 -
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-09-29
Diamond blastp: OGS1.0 vs UniRef902022-09-16
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig136895.2599.1mRNA_H-elongata_contig136895.2599.1Himanthalia elongata Himel1 dioeciousmRNAH-elongata_contig136895 387..1641 -


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_H-elongata_contig136895.2599.1 ID=prot_H-elongata_contig136895.2599.1|Name=mRNA_H-elongata_contig136895.2599.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=189bp
GRDLIAGGTWLGVNRSGKFATVTNIPSAWDDLVAFVEGTTTSMRAALAST
TIAAAAAAAAAAAIVKRREGAWAFSLGLLCAGIMTASVGLAMAATAALRR
SRGRLVSEFLKGDESAEQYCARIFKDRWRYAGFNLVLVDPGSAWVLNNRS
EEVIMRLPHGFYGVSNASLDTPWTKMLYGKSRVLQVLLR
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Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR008551TANGO2