prot_H-elongata_contig13663.2583.1 (polypeptide) Himanthalia elongata Himel1 dioecious

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview


Name	mRNA_H-elongata_contig13663.2583.1
Unique Name	prot_H-elongata_contig13663.2583.1
Type	polypeptide
Organism	Himanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Sequence length	223

Homology

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BLAST of mRNA_H-elongata_contig13663.2583.1 vs. uniprot
Match: D8LBU8_ECTSI (Similar to centromere protein E n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LBU8_ECTSI)

HSP 1 Score: 189 bits (479), Expect = 3.470e-52
Identity = 117/205 (57.07%), Postives = 150/205 (73.17%), Query Frame = 0

Query:   17 QRKKDIAHRSREMKNNLESLLWDSHKSRSELTGQRGTLEQELKRLRRRMEDRSKMSLEEERKATDLARECGALKTQLEAAGQDIAFANEELKAVRASKSEADETLIAKDIENAKLRTKNESLKKEMDRRLHLANQEKIALSESMANTKRLFDERETTLGDQIKHMEEDSSALADALAEKVAQLEEQLTKAEEGGERLRTEARALK 221
            QRKKD+A RSREMKN+LE LL +S KS+++L GQR TLE EL +LRRRM++R+K +LEEERK T LARECG LKT+LEAA QDI  A+EEL AVR +K EADE L+ KD EN+KLR KNESL+ EMDRRLH  NQEK  L+E M  + R   ERE  L  Q++    ++  + +A + +++++EEQL  A E  ERL+ +AR  K
Sbjct:  188 QRKKDVAARSREMKNHLEKLLLNSQKSQADLAGQRSTLEAELGKLRRRMDERAKTALEEERKTTTLARECGNLKTELEAARQDITSASEELAAVRLTKQEADEALLGKDKENSKLRNKNESLRVEMDRRLHALNQEKGDLAEKMEESIRELKERENLLHGQLEATGRENKEIQEAQSAEISEMEEQLRLANEDRERLKADARKAK 392

[Close]

BLAST of mRNA_H-elongata_contig13663.2583.1 vs. uniprot
Match: A0A6H5KXI9_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KXI9_9PHAE)

HSP 1 Score: 176 bits (447), Expect = 5.960e-49
Identity = 109/193 (56.48%), Postives = 141/193 (73.06%), Query Frame = 0

Query:   29 MKNNLESLLWDSHKSRSELTGQRGTLEQELKRLRRRMEDRSKMSLEEERKATDLARECGALKTQLEAAGQDIAFANEELKAVRASKSEADETLIAKDIENAKLRTKNESLKKEMDRRLHLANQEKIALSESMANTKRLFDERETTLGDQIKHMEEDSSALADALAEKVAQLEEQLTKAEEGGERLRTEARALK 221
            MKN+LE LL DS KS+++L GQR TLE EL +LRRRM++R+KM+LEEERK T LARECG LKT+LEAA QDI  A+EEL AVR +K EADE L+ KD EN+KLR+KNESL+ EMDRRLH  NQEK  L+E M  + R   +RE  L  Q++    ++  + +A A +++++EEQL  A E  ERL+ +AR  K
Sbjct:    1 MKNHLEKLLLDSQKSQADLAGQRATLEAELGKLRRRMDERAKMALEEERKTTRLARECGNLKTELEAARQDITSASEELAAVRLTKQEADEALLEKDKENSKLRSKNESLRVEMDRRLHALNQEKGDLAEKMEESIRELKDRENLLHGQLEATGRENKEIQEAQAAEISEMEEQLRLANEDRERLKADARKAK 193

The following BLAST results are available for this feature:

BLAST of mRNA_H-elongata_contig13663.2583.1 vs. uniprot

BLAST of mRNA_H-elongata_contig13663.2583.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 2


Match Name	E-value	Identity	Description
D8LBU8_ECTSI	3.470e-52	57.07	Similar to centromere protein E n=1 Tax=Ectocarpus...	[more]
A0A6H5KXI9_9PHAE	5.960e-49	56.48	Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA...	[more]

InterPro

Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	COILS	Coil	Coil	coord: 5..32
None	No IPR available	COILS	Coil	Coil	coord: 93..141
None	No IPR available	COILS	Coil	Coil	coord: 182..223
None	No IPR available	COILS	Coil	Coil	coord: 44..71

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
H-elongata_contig13663	contig	H-elongata_contig13663:1381..4937 +

Analyses

This polypeptide is derived from or has results from the following analyses


Analysis Name	Date Performed
InterProScan on OGS1.0	2022-09-29
Diamond blastp: OGS1.0 vs UniRef90	2022-09-16
OGS1.0 of Himanthalia elongata Himel1 dioecious	2021-02-24

Relationships

This polypeptide derives from the following mRNA feature(s):


Feature Name	Unique Name	Species	Type	Position
mRNA_H-elongata_contig13663.2583.1	mRNA_H-elongata_contig13663.2583.1	Himanthalia elongata Himel1 dioecious	mRNA	H-elongata_contig13663 1381..4939 +

Sequences

The following sequences are available for this feature:

polypeptide sequence

polypeptide sequence

>prot_H-elongata_contig13663.2583.1 ID=prot_H-elongata_contig13663.2583.1|Name=mRNA_H-elongata_contig13663.2583.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=223bp
LEETVTTKNEEIKSLEQRKKDIAHRSREMKNNLESLLWDSHKSRSELTGQ
RGTLEQELKRLRRRMEDRSKMSLEEERKATDLARECGALKTQLEAAGQDI
AFANEELKAVRASKSEADETLIAKDIENAKLRTKNESLKKEMDRRLHLAN
QEKIALSESMANTKRLFDERETTLGDQIKHMEEDSSALADALAEKVAQLE
EQLTKAEEGGERLRTEARALKED