mRNA_H-elongata_contig13661.2582.1 (mRNA) Himanthalia elongata Himel1 dioecious
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Overview
Homology
BLAST of mRNA_H-elongata_contig13661.2582.1 vs. uniprot
Match: D7G3B9_ECTSI (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D7G3B9_ECTSI) HSP 1 Score: 555 bits (1430), Expect = 1.440e-170 Identity = 343/709 (48.38%), Postives = 414/709 (58.39%), Query Frame = 2
Query: 1154 EQIRDAYRFQWSLPGARACLSCGSHLMLRGEADLALPQIDPER--------------------------IHDSSKGEGGAAGGTLGVHASAYVRLTIAHLASKAFSDYQRQLWDPLSVPIGLDMNDAGYARGGPGIDSVGLSNVTSRGVSDERFQGLKSWALRGQGEWHFHVFGETVGLFAMDVRQGRAGLQRDERAPLLSDAQWSSLVLALSIEEIQVMAVVGDEPFVTDSILDARTKGRRPSNAHLRRSWPFHGGELLRLLAMLVDWEKTGGMGGEPREVLLIGGGLQYPLESVIRDSITAVSITQTICGPSRGASKLDMIRFKATGQLNKRLSYHHTI--------------SADDNISNKSAGHNRGHKSPRH--GGDCDSG----------RWPSFVLVRCEARGAEFSARLQVWKRLFTAASWTAWC---DVSRAAPS--------PSSDAHKPRSHSQTSTVASTYTVRPRGTPRWALEVDEHDQRDGGTTSHVLP-------TEVHEALKV----QALAEVLTEAFEELLDIDEGKN-NETMTWARGGARVVTRRVFDIVMRMYDHAAYTTVRALCPTRPSPIVVHRLILARQNESREEGDNS--NAPLPLATNIQTEAFGGSPESKSRAVHGRKNGDDQMKPHGEGVPSVGKKYVGEGG-----RSLLFPMWLFTSLPFHDEDTFTSFFCEVLLASGRLA 3034
E+IRDAYRFQWSLPGAR CLSCGSHLM+RGEADLALPQ+D + GG LG+ SAY R+T+A LAS+AF DYQRQLWDPLSVP+GLDMND GYARGGPGIDSVG + R + ++ G+GEWHFHV+GETVGLFA+DVR+G AGLQRDERAPLLSD QWSSL ALSIEEIQ M VVGD PFV+DSILDARTK R PS+AHLRRSWPFHGGELLRL+ MLV+W+ G +GGEPREV LIGGG+QYPLE+VI DS ++V+ITQT+CGP G L F+ G L++R Y HTI SA + S RH G ++G R PS VLVRCEARGA SARL + R FTA+SW AWC D AA S PS++A+ P + T RPR PRWA+ Q TTS TE +AL ++L++VL EAF+ +LDI+EG++ +E + AR G TRRVF+ + +Y++AA VRAL PTRPSPIVV L+ + Q +N+ N P + ES + + G + GEG + K EG RSLL P WLF LPFHDE++F FFC+VL S RLA
Sbjct: 1161 ERIRDAYRFQWSLPGARVCLSCGSHLMVRGEADLALPQLDGSSRXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXETLAAGKGGLLGLQVSAYARITLARLASQAFDDYQRQLWDPLSVPMGLDMNDVGYARGGPGIDSVGSGDGFFRDAA----------SVGGEGEWHFHVYGETVGLFALDVREGSAGLQRDERAPLLSDTQWSSLARALSIEEIQAMVVVGDAPFVSDSILDARTKARHPSHAHLRRSWPFHGGELLRLVGMLVEWKTAGAVGGEPREVTLIGGGVQYPLETVINDSASSVAITQTVCGPFYGIPSLHGRVFEPAGALSQRFFYSHTINDPQQQQPGGVHPASAASDYKVMPPPRPLSSTSDRHDENGSIENGALVPEIDSPYRSPSCVLVRCEARGAGPSARLLLRSRFFTASSWAAWCSDGDAGAAAKSARPASPLPPSTEANVPPLSEPPAD-----TGRPRAAPRWAVTAW---QEQAETTSKXXXXXXXRGATEAADALAALCTDESLSDVLLEAFDRVLDINEGEDEDEALAAARAGTGDATRRVFESLAWVYNNAACARVRALYPTRPSPIVVRHLLKSAQQRGSGSSNNADENKVPPRPAKVS--------ESVETTIAKGRQGRSGQRGGGEGKMTKRSKTRDEGAKEGEARSLL-PSWLFVHLPFHDEESFAEFFCKVLRGSERLA 1842
BLAST of mRNA_H-elongata_contig13661.2582.1 vs. uniprot
Match: F0Y511_AURAN (FYVE-type domain-containing protein n=1 Tax=Aureococcus anophagefferens TaxID=44056 RepID=F0Y511_AURAN) HSP 1 Score: 139 bits (349), Expect = 2.060e-29 Identity = 94/288 (32.64%), Postives = 136/288 (47.22%), Query Frame = 2
Query: 1154 EQIRDAYRFQWSLPGARACLSCGSHLMLRGEADLA-LPQIDPERIHDSSKGEGGAAGGTLGVHASAYVRLTIAHLASKAFSDYQRQLWDPLSVPIGLDMNDAGYARGGPGIDSVGLSNV--TSRGVSDERFQGLKSWALRGQGEWHFHVF-GETVGLFAMDVRQ--------------GRAGLQRDE-RAPLLSDAQWSSLVLALSIEEIQVMAVVGDEPFVTDSILDARTKGRRPSNAHLRRSWPFHGGELLRLLAMLVDWEKTGGMGGEPREVLLIGGGLQYPLES 1960
+++RD YR W+LPG R L+ GSH+MLRG+ D L + I +G + S YV L + + +YQRQLWDPL ++ A + VGL + ++ GV + G S + GEW F F G VGLFA+D ++ G+ G PL+ D QW +L AL+ E ++ + V D PF+ +SI DA+ K +P + +WP HGG+LLRLL +L DWE R V + GG L++
Sbjct: 911 DRLRDGYRTHWNLPGTREMLARGSHVMLRGDKDFGTLLMREGSPITSLERGMMVGSIQCSEELRSGYVYRAARRLTQRVYREYQRQLWDPLPNCAAAAVSAAERHLDNGSLRDVGLDHPWGSTPGVPEGHATGCSS--VSSHGEWFFETFCGGVVGLFALDTKREPAHQRLWGGNRALGKGGTSWPPMEVPLVGDDQWDALEEALNTEGLRALYVASDCPFLDNSINDAKYKMTQPEQRDVCHTWPAHGGDLLRLLGLLEDWEAE----AYERRVFFLAGGATCGLDT 1192
BLAST of mRNA_H-elongata_contig13661.2582.1 vs. uniprot
Match: A0A836CLN7_9STRA (Uncharacterized protein (Fragment) n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CLN7_9STRA) HSP 1 Score: 132 bits (333), Expect = 1.280e-27 Identity = 99/299 (33.11%), Postives = 137/299 (45.82%), Query Frame = 1
Query: 19 ERSFLEMILHAGHSPTTAVAAGLDPTASA--LGMQPSVVAEAVKMVCVGATVVLGPVVGRVTQGSAVILIEAGNTAVVGCVLTDSVTARQHRQIRILTPGQPYAFFFDILEEHRHYTVSLDGVDNSEARRGAFTTLKAWSDRRDPHVSRAAKRVSVVDSN------------NDERGPHSGCSPRTKDDGDDDSSAFDFRMIFVSGTGLSGEARVGNQDPRAGQSGTFGVGNAPGAADTMRTIGREMWRPWPEADIVVHTGSQANLESAVMETLPILANAESEEDGSVAREQAEAMAME 873
+RS+L+++ G SP V A A G+ P +A V+ V+LGPVVGRVTQ +AV+L+E A V CVLT++VT +H L P P+AF+F L Y ++L GV ++ AR GA TTL W P V RAA + D++ + + D R +FVSG G +G G D T+ + RPWP+AD++VH G L +A E LP+LA AE+E GS AR + E A+E
Sbjct: 681 QRSYLDVVFDIGASPLALVRTHGIAAAEAHPQGLAPHALARFVRTFTCAPQVLLGPVVGRVTQSTAVVLMEVDRAAAVACVLTNAVTGARHALAAALPPRAPHAFYFQDLAHGTPYALALSGVAHAAARTGALTTLPLWLGLGVPRVLRAAAAAAAPDAHAAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXAEDATMDLRALFVSGIGAAG-----------------------GDGDNFETLALALGRPWPQADLMVHLGGAVCLRAARAEALPLLAAAEAEPGGSGARRELEGRALE 956
BLAST of mRNA_H-elongata_contig13661.2582.1 vs. uniprot
Match: A0A7S2WI32_9STRA (Hypothetical protein (Fragment) n=1 Tax=Rhizochromulina marina TaxID=1034831 RepID=A0A7S2WI32_9STRA) HSP 1 Score: 92.8 bits (229), Expect = 2.450e-15 Identity = 71/232 (30.60%), Postives = 108/232 (46.55%), Query Frame = 1
Query: 157 GATVVLGPVVGRVTQGSAVILIEAGNTAVVGCVLTDSVTARQHRQIRILTPGQPYAFFFDILEEHRHYTVSLDGVDNSE-ARRGAFTTLKAWSDRRDPHVSRAAKRVSVVDSNNDERGPHSGCSPRTKDDGDDDSSA-FDFRMIFVSGTGLSGEARVGNQDPRAGQSGTFGVGNAPGAADTMRTIGREMWRPWPEADIVVHTGSQANLESAVMETLPILANAESEEDGSVAR 846
G +VLGPV+G+VT SAVIL+E A V +LTDS+T +HRQ+R+L +P+ F+ + L R+YTV L+GV + A G+ TTL+ W H+S GD +++A F ++ V+G R+ +P + G + R + + PW D+++H G Q + SAV +L A E+ GS AR
Sbjct: 557 GVGLVLGPVIGKVTHHSAVILVEIDAEAPVSLILTDSLTGEEHRQLRVLPAHRPHVFYMEHLTAARYYTVRLEGVSQATGACLGSLTTLRRWK----THIS-----------------------------GDGEATAEFQGSILAVNG---DCPVRLLETEPALSKEGL----------EQWRALAGTLEAPWSGVDLLLHMGGQVEMGSAVRGAATLLGQALREDPGSPAR 742
BLAST of mRNA_H-elongata_contig13661.2582.1 vs. uniprot
Match: A0A7S3XRR2_HETAK (Hypothetical protein (Fragment) n=1 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A7S3XRR2_HETAK) HSP 1 Score: 92.0 bits (227), Expect = 3.260e-15 Identity = 86/270 (31.85%), Postives = 120/270 (44.44%), Query Frame = 1
Query: 10 ADGERSFLEMILHAGHSPTTAVAAGLDPTASALGMQPSVVAEAVKMVCVGATVVLGPVVGRVTQGSAVILIEAGNTAVVGCVLTDSVTARQHRQIRILTPGQPYAFFFDILEEHRHYTVSLDGVDNSEARRGAFTTLKAWSDRRDPHVSRAAKRVSVVDSNNDERGPHSGCSPRTKDDGDDDSSAFDFRMIFVSGTGLSGEARVGNQDPRAGQSGTFGVGNAPGAADTMRTIGREMWRPWPEADIVVHTGSQANLESAVMETLPILANAE 819
A G R++LE+ L AG P ASA Q + G V LGPVVGRVT +AV+L+E +TA V CV+T+S+ R HRQ R L +P AF F L+ RH+T+ L+GV+++ R G FTT P + AA P GC R+ FVS G +D +G F +G D + + + + W D+VVH G+Q L++A+ E +L AE
Sbjct: 224 ARGRRTYLELALAAGRPGDPR------PAASACHFQDAF--------SDGVRVALGPVVGRVTNTTAVVLLEVDHTAAVTCVVTESLGGRVHRQTRRLRRLRPTAFRFLGLQPGRHHTLRLEGVEDAGGRTGGFTT---------PGAAAAA--------------PARGC-----------------RVAFVSHPPPR-PLPPGMEDELSGVD--FDLGYLTSKTDGLEKLADTLAQAWSPIDMVVHLGNQVMLDTAMGEVRAMLVAAE 436
BLAST of mRNA_H-elongata_contig13661.2582.1 vs. uniprot
Match: A0A425D636_9STRA (Uncharacterized protein n=4 Tax=Aphanomyces astaci TaxID=112090 RepID=A0A425D636_9STRA) HSP 1 Score: 79.7 bits (195), Expect = 1.310e-11 Identity = 87/357 (24.37%), Postives = 147/357 (41.18%), Query Frame = 2
Query: 1136 VAADSPEQIRDAYRFQWSLPGARACLSCGSHLMLRGEADL-------ALPQIDPERIHDSSKGEGGAAGGTLGVHASAYVRLTIAHLASKAFSDYQRQLWD------PLSVPIGLDMNDAGYARGGPGIDSVG-----LSNVTSRGVSDE-RFQGLKSWALRGQGEWHFHVFGETVGLFAMDVRQGR---AGLQRDERAPLLSDAQWSSLVLALSIEEIQVMAVVGDEPFVTDS---ILDARTKGRRPSNAHLRRS---------WPFHGGELLRLLAMLVDWEKTGGMGGEPREVLLIGGGLQY--PLESVIRDSITAVSITQTICGPSRGASKLDMIRFKATGQLNKRLSYHHTI 2098
+ A E++RDAYRFQWSLP R L+ S+LM+ G+ D+ A Q+D E + V + A + + +YQRQLWD LD + A A+ D V LS + + + E ++ L+ +GE F +G +D+R + +G Q + P+ S QW ++ L+ ++V+ V + P V DS I + T + PS++ R W + RLL ++ +W+ + RE++L+ G L S + D Q + GP G + ++ + TG + R ++ H +
Sbjct: 130 MEAQVVERLRDAYRFQWSLPSVRRVLANTSNLMMWGDEDIYRNFTTSATFQMDHEAPTVQMQ-----------------VMRVLLRSARRVYHEYQRQLWDVDYHEFQTQTSAELDKHLA-LAKRKMDFDMVKRCESRLSELKTLTANLEAQYVTLREQTAPRRGEEFFFRLENHMGFLMLDIRGTKLTPSGAQAPDN-PVFSPVQWDFVLKVLADVTLRVLVVCSELPLVDDSNANIQEFITSSKVPSSSSSSRPNPRSSCRSWWGAVPRDQQRLLTLVSEWK----LQKPNRELVLLSGASSMGGALASTVTDMKMRTEFHQHVVGPIAGPCHMALVPTR-TGVVGDRFAFQHDV 462
BLAST of mRNA_H-elongata_contig13661.2582.1 vs. uniprot
Match: A0A6S8VRX3_9STRA (Hypothetical protein n=1 Tax=Pelagomonas calceolata TaxID=35677 RepID=A0A6S8VRX3_9STRA) HSP 1 Score: 77.8 bits (190), Expect = 9.130e-11 Identity = 41/97 (42.27%), Postives = 62/97 (63.92%), Query Frame = 1
Query: 157 GATVVLGPVVGRVTQGSAVILIEAGNTAVVGCVLTDSVTARQHRQIRILTPGQPYAFFFDILEEHRHYTVSLDGVDNSEARRGAFTTLKAWSDRRDP 447
G V +GPV+G VT+ +A+IL+E A VGCV+TD+++ + + L +P+AF + L+ HRHY V DGV++ E RRG+FTT + + R P
Sbjct: 856 GVKVTVGPVIGLVTESTAIILLEVEWEAPVGCVVTDALSGERMTILNHLPKLRPHAFRVEGLKPHRHYHVRFDGVEDPEKRRGSFTTCASLAAPRRP 952
BLAST of mRNA_H-elongata_contig13661.2582.1 vs. uniprot
Match: A0A7S3ZY74_9STRA (Hypothetical protein (Fragment) n=2 Tax=Pelagomonas calceolata TaxID=35677 RepID=A0A7S3ZY74_9STRA) HSP 1 Score: 77.8 bits (190), Expect = 1.010e-10 Identity = 41/97 (42.27%), Postives = 62/97 (63.92%), Query Frame = 1
Query: 157 GATVVLGPVVGRVTQGSAVILIEAGNTAVVGCVLTDSVTARQHRQIRILTPGQPYAFFFDILEEHRHYTVSLDGVDNSEARRGAFTTLKAWSDRRDP 447
G V +GPV+G VT+ +A+IL+E A VGCV+TD+++ + + L +P+AF + L+ HRHY V DGV++ E RRG+FTT + + R P
Sbjct: 856 GVKVTVGPVIGLVTESTAIILLEVEWEAPVGCVVTDALSGERMTILNHLPKLRPHAFRVEGLKPHRHYHVRFDGVEDPEKRRGSFTTCASLAAPRRP 952
BLAST of mRNA_H-elongata_contig13661.2582.1 vs. uniprot
Match: A0A6G0WSN4_9STRA (Uncharacterized protein n=1 Tax=Aphanomyces euteiches TaxID=100861 RepID=A0A6G0WSN4_9STRA) HSP 1 Score: 75.5 bits (184), Expect = 4.870e-10 Identity = 78/316 (24.68%), Postives = 127/316 (40.19%), Query Frame = 2
Query: 1064 FYLLWEKVQRTLLSTARRLPLN*YVAADSPEQIRDAYRFQWSLPGARACLSCGSHLMLRGEADLALPQIDPERIHDSSKGEGGAAGGTLGVHASAYVRL----TIAHLASKAFSDYQRQLWDPLSVPIGLDMNDAGYA------------RGGPGIDSVGLSNVTSRGVSD----------------------ERFQGLKSWALRGQGEWHFHVFGETVGLFAMDVRQGR---AGLQRDERAPLLSDAQWSSLVLALSIEEIQVMAVVGDEPFVTDSILDARTKGRRPSNAHLRRSW-PFHGGELLRLLAMLVDWE 1885
F W + R + ST + + A E++RDAYRFQWSLP R L+ S+LML + D+ E + H S +++ T+ A + +YQRQLWD +MN+ + R I+ V + T++ + + F L+ +GE +F +G +D+R R AG Q + P+LS AQW ++ AL ++++ + + P V DS + +A + RSW F + RLLA+L +W+
Sbjct: 211 FQQCWVLLSRYVQSTTPQASWE-EMEAKVVERMRDAYRFQWSLPHVRNVLANVSNLMLWSDQDIYADFTCSEIFKAN--------------HESPTIQMQIMRTLLRSARLIYHEYQRQLWDANYSEFYKEMNELVKSSEAAINATVTVHRSRQEIEEVEKTLATAKRKMEFDVVKRCESRMNELKAKIEQLQKEFVKLREQIDSRRGEEYFFKTDSNIGFLMLDMRGSRLTPAGAQSPDN-PILSPAQWDYVLSALGDTTVRLLVICSELPIVDDSNANITNALAVHESASVCRSWWGFTPRDQERLLALLSEWK 510
BLAST of mRNA_H-elongata_contig13661.2582.1 vs. uniprot
Match: W4G5V7_9STRA (Uncharacterized protein n=1 Tax=Aphanomyces astaci TaxID=112090 RepID=W4G5V7_9STRA) HSP 1 Score: 74.3 bits (181), Expect = 1.290e-9 Identity = 87/379 (22.96%), Postives = 146/379 (38.52%), Query Frame = 2
Query: 1136 VAADSPEQIRDAYRFQWSLPGARACLSCGSHLMLRGEADL-------ALPQIDPERIHDSSKGEGGAAGGTLGVHASAYVRLTIAHLASKAFSDYQRQLWD---------------PLSVPIGLDMNDAGYARGGPGIDS------------------VGLSNVTSRGVSDE-RFQGLKSWALRGQGEWHFHVFGETVGLFAMDVRQGR---AGLQRDERAPLLSDAQWSSLVLALSIEEIQVMAVVGDEPFVTDS---ILDARTKGRRPSNAHLRRS---------WPFHGGELLRLLAMLVDWEKTGGMGGEPREVLLIGGGLQY--PLESVIRDSITAVSITQTICGPSRGASKLDMIRFKATGQLNKRLSYHHTI 2098
+ A E++RDAYRFQWSLP R L+ S+LM+ G+ D+ A Q+D E + V + A + + +YQRQLWD I N A YA +D LS + + + E ++ L+ +GE F +G +D+R + +G Q + P+ S QW ++ L+ ++V+ V + P V DS I + T + PS++ R W + RLL ++ +W+ + RE++L+ G L S + D Q + GP G + ++ + TG + R ++ H +
Sbjct: 246 MEAQVVERLRDAYRFQWSLPSVRRVLANTSNLMMWGDEDIYRNFTTSATFQMDHEAPTVQMQ-----------------VMRVLLRSARRVYHEYQRQLWDVDYHEFQTQTDILVAASEAAIVATSNVAQYAFESAELDKHLALAKRKMDFDMVKRCESRLSELKTLTANLEAQYVTLREQTAPRRGEEFFFRLENHMGFLMLDIRGTKLTPSGAQAPDN-PVFSPVQWDFVLKVLADVTLRVLVVCSELPLVDDSNANIQEFITSSKVPSSSSSSRPNPRSSCRSWWGAVPRDQQRLLTLVSEWK----LQKPNRELVLLSGASSMGGALASTVTDMKMRTEFHQHVVGPIAGPCHMALVPTR-TGVVGDRFAFQHDV 601 The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig13661.2582.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 11
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following CDS feature(s) are a part of this mRNA:
The following UTR feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_H-elongata_contig13661.2582.1 >prot_H-elongata_contig13661.2582.1 ID=prot_H-elongata_contig13661.2582.1|Name=mRNA_H-elongata_contig13661.2582.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=610bp MLRGEADLALPQIDPERIHDSSKGEGGAAGGTLGVHASAYVRLTIAHLASback to top mRNA from alignment at H-elongata_contig13661:1405..7093- Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_H-elongata_contig13661.2582.1 ID=mRNA_H-elongata_contig13661.2582.1|Name=mRNA_H-elongata_contig13661.2582.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=5689bp|location=Sequence derived from alignment at H-elongata_contig13661:1405..7093- (Himanthalia elongata Himel1 dioecious)back to top Coding sequence (CDS) from alignment at H-elongata_contig13661:1405..7093- >mRNA_H-elongata_contig13661.2582.1 ID=mRNA_H-elongata_contig13661.2582.1|Name=mRNA_H-elongata_contig13661.2582.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=3660bp|location=Sequence derived from alignment at H-elongata_contig13661:1405..7093- (Himanthalia elongata Himel1 dioecious)back to top |