mRNA_H-elongata_contig103072.258.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig103072.258.1
Unique NamemRNA_H-elongata_contig103072.258.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
BLAST of mRNA_H-elongata_contig103072.258.1 vs. uniprot
Match: D7G036_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G036_ECTSI)

HSP 1 Score: 146 bits (369), Expect = 4.970e-44
Identity = 60/92 (65.22%), Postives = 78/92 (84.78%), Query Frame = 1
Query:    1 MQEKLTAPPDFDGPVRDRKCTDVFFALLLIVLWVAMTIVGITSIQEGDVTKLIAPTDYEGNLCGYDSGYEDLPFFYYVNYEGSGICIETCPT 276
            MQ+KLTAPP+FDGPVRDRKCTD+ F L +I++W+ MT+VGI+S+Q+GDV +L+APTDYEGNLCG+D GYED    YY N  GSG+C ++CP+
Sbjct:    1 MQDKLTAPPEFDGPVRDRKCTDIIFTLAIIIMWITMTVVGISSVQQGDVRELLAPTDYEGNLCGFDDGYEDRGKLYYANNVGSGVCEKSCPS 92          
BLAST of mRNA_H-elongata_contig103072.258.1 vs. uniprot
Match: A0A6H5JW76_9PHAE (Choline transporter-like protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JW76_9PHAE)

HSP 1 Score: 145 bits (366), Expect = 6.660e-39
Identity = 61/92 (66.30%), Postives = 77/92 (83.70%), Query Frame = 1
Query:    1 MQEKLTAPPDFDGPVRDRKCTDVFFALLLIVLWVAMTIVGITSIQEGDVTKLIAPTDYEGNLCGYDSGYEDLPFFYYVNYEGSGICIETCPT 276
            MQ+KLTA P+FDGPVR+RKCTD+ F L +I++W+ MT VGI+SIQ+GDV +L+APTDYEGNLCG+D GYEDL   YY N  GSG+C+ TCP+
Sbjct:    4 MQDKLTASPEFDGPVRERKCTDIIFMLAIIIMWITMTAVGISSIQQGDVRELLAPTDYEGNLCGFDDGYEDLGKLYYANNVGSGVCVGTCPS 95          
BLAST of mRNA_H-elongata_contig103072.258.1 vs. uniprot
Match: A0A7S4J5U8_9STRA (Choline transporter-like protein n=1 Tax=Odontella aurita TaxID=265563 RepID=A0A7S4J5U8_9STRA)

HSP 1 Score: 107 bits (268), Expect = 2.780e-25
Identity = 46/93 (49.46%), Postives = 65/93 (69.89%), Query Frame = 1
Query:    7 EKLTAPPDFDGPVRDRKCTDVFFALLLIVLWVAMTIVGITSIQEGDVTKLIAPTDYEGNLCGYDSG---YEDLPFFYYVNYEGSGICIETCPT 276
            EKL APPDF GPV++R+CTDV  +LLL++ W AMT +G  ++  GD   ++ P DY+GN+CG + G    ED PF YYVN   +G+C++ CP+
Sbjct:    9 EKLQAPPDFSGPVQNRRCTDVLCSLLLVLTWAAMTGLGFYAVSNGDYRVIVYPMDYDGNICGTNYGNIDMEDYPFLYYVNSYSAGVCVKECPS 101          
BLAST of mRNA_H-elongata_contig103072.258.1 vs. uniprot
Match: A0A7S4R109_9STRA (Choline transporter-like protein n=2 Tax=Ditylum brightwellii TaxID=49249 RepID=A0A7S4R109_9STRA)

HSP 1 Score: 102 bits (253), Expect = 2.950e-23
Identity = 42/92 (45.65%), Postives = 63/92 (68.48%), Query Frame = 1
Query:   10 KLTAPPDFDGPVRDRKCTDVFFALLLIVLWVAMTIVGITSIQEGDVTKLIAPTDYEGNLCGYDSG---YEDLPFFYYVNYEGSGICIETCPT 276
            KL AP DFDGP ++R+CTDVF +LLL++ W+AMT +G  ++  GD   ++ P DY+GN+CG D G     D  +FY++N    G+C++ CP+
Sbjct:   13 KLIAPADFDGPTKNRRCTDVFCSLLLVIAWIAMTGIGAYAVTNGDYRFVLFPIDYDGNICGTDFGDVDMTDFEYFYFINIFTGGVCVKECPS 104          
BLAST of mRNA_H-elongata_contig103072.258.1 vs. uniprot
Match: A0A7S3Y2F1_HETAK (Choline transporter-like protein n=1 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A7S3Y2F1_HETAK)

HSP 1 Score: 101 bits (252), Expect = 3.960e-23
Identity = 40/89 (44.94%), Postives = 63/89 (70.79%), Query Frame = 1
Query:    7 EKLTAPPDFDGPVRDRKCTDVFFALLLIVLWVAMTIVGITSIQEGDVTKLIAPTDYEGNLCGYDSGYEDLPFFYYVNYEGSGICIETCP 273
            E + A  DFDGPV++R+CTD+ +  LL+V+W+ MT++G  ++  GD+  ++ P DY+G  CG    YED P  YYV ++G+G+C+E+CP
Sbjct:   10 EPIQAGHDFDGPVKNRRCTDLLWLGLLLVVWICMTVIGKQAVDNGDIDLILHPVDYQGRSCGVGD-YEDKPDLYYVRFDGTGVCVESCP 97          
BLAST of mRNA_H-elongata_contig103072.258.1 vs. uniprot
Match: B7FYN0_PHATC (Choline transporter-like protein n=2 Tax=Phaeodactylum tricornutum TaxID=2850 RepID=B7FYN0_PHATC)

HSP 1 Score: 101 bits (252), Expect = 4.010e-23
Identity = 44/91 (48.35%), Postives = 60/91 (65.93%), Query Frame = 1
Query:    7 EKLTAPPDFDGPVRDRKCTDVFFALLLIVLWVAMTIVGITSIQEGDVTKLIAPTDYEGNLCGYDSGYE--DLPFFYYVNYEGSGICIETCP 273
            +KL AP DFDGP +DR CTD+   L LI +WVAMT VGI ++  GD   ++ P DY+GN+CG D G +  + P+  YVN    G+C++ CP
Sbjct:    8 DKLVAPADFDGPTKDRHCTDILMLLALIAMWVAMTGVGIYAVTNGDYRLVLYPLDYDGNVCGTDFGLDMTEFPYLLYVNSYTGGVCVKECP 98          
BLAST of mRNA_H-elongata_contig103072.258.1 vs. uniprot
Match: A0A7S2HA85_9STRA (Choline transporter-like protein n=1 Tax=Helicotheca tamesis TaxID=374047 RepID=A0A7S2HA85_9STRA)

HSP 1 Score: 101 bits (252), Expect = 4.040e-23
Identity = 43/92 (46.74%), Postives = 60/92 (65.22%), Query Frame = 1
Query:    7 EKLTAPPDFDGPVRDRKCTDVFFALLLIVLWVAMTIVGITSIQEGDVTKLIAPTDYEGNLCGYDSG---YEDLPFFYYVNYEGSGICIETCP 273
            EKL AP DFDGP +DR CTD+F ++LL+ +W+AMT +G  +   GD   ++ P DY+GN+CG D G     D P+  YVN    G+C++ CP
Sbjct:   18 EKLVAPADFDGPTKDRHCTDIFCSILLLCMWIAMTGLGAYAATNGDFRVILYPLDYDGNICGTDYGSIDMNDYPYLVYVNIFSGGVCVKECP 109          
BLAST of mRNA_H-elongata_contig103072.258.1 vs. uniprot
Match: A0A6V1T854_HETAK (Choline transporter-like protein n=1 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A6V1T854_HETAK)

HSP 1 Score: 99.8 bits (247), Expect = 1.840e-22
Identity = 42/81 (51.85%), Postives = 57/81 (70.37%), Query Frame = 1
Query:   31 FDGPVRDRKCTDVFFALLLIVLWVAMTIVGITSIQEGDVTKLIAPTDYEGNLCGYDSGYEDLPFFYYVNYEGSGICIETCP 273
            F  P ++RKCTD  FALLLI  W AMT +G  S+Q+GD+T       Y+G++CG DSG EDLP+ YYV  + +G+C+E+CP
Sbjct:   14 FMSPEKNRKCTDFLFALLLIASWAAMTYLGYQSMQDGDITVFTTGMQYDGSVCGVDSGVEDLPYLYYVRTDLTGVCVESCP 94          
BLAST of mRNA_H-elongata_contig103072.258.1 vs. uniprot
Match: D8LIJ7_ECTSI (Choline transporter-like protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LIJ7_ECTSI)

HSP 1 Score: 96.7 bits (239), Expect = 2.300e-21
Identity = 41/89 (46.07%), Postives = 59/89 (66.29%), Query Frame = 1
Query:   10 KLTAPPDFDGPVRDRKCTDVFFALLLIVLWVAMTIVGITSIQEGDVTKLIAPTDYEGNLCGYDSGYEDLPFFYYVNYEGSGICIETCPT 276
            KL AP D +G   DR+CTDV F L+LI+ W+AMT +G+  I  G+   L+   DY+G +CG D G +D    YY+ ++G+G+C+E CPT
Sbjct:   17 KLAAPDDIEGGA-DRRCTDVLFMLVLILAWLAMTYLGVDGISNGNPDLLLNGIDYDGRICGVDDGVKDKSKLYYIRFDGTGVCVEECPT 104          
BLAST of mRNA_H-elongata_contig103072.258.1 vs. uniprot
Match: A0A6H5L007_9PHAE (Choline transporter-like protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L007_9PHAE)

HSP 1 Score: 94.7 bits (234), Expect = 1.100e-20
Identity = 40/87 (45.98%), Postives = 58/87 (66.67%), Query Frame = 1
Query:   16 TAPPDFDGPVRDRKCTDVFFALLLIVLWVAMTIVGITSIQEGDVTKLIAPTDYEGNLCGYDSGYEDLPFFYYVNYEGSGICIETCPT 276
            TAP D +G   DR+CTDV F L+LI+ W+AMT +G+  I  G+   L+   DY+G +CG D G +D    YY+ ++G+G+C+E CPT
Sbjct:    3 TAPDDIEGGA-DRRCTDVLFMLVLILAWLAMTYLGVDGISNGNPDLLLNGIDYDGRICGVDDGVKDKSKLYYIRFDGTGVCVEECPT 88          
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig103072.258.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D7G036_ECTSI4.970e-4465.22Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A6H5JW76_9PHAE6.660e-3966.30Choline transporter-like protein n=1 Tax=Ectocarpu... [more]
A0A7S4J5U8_9STRA2.780e-2549.46Choline transporter-like protein n=1 Tax=Odontella... [more]
A0A7S4R109_9STRA2.950e-2345.65Choline transporter-like protein n=2 Tax=Ditylum b... [more]
A0A7S3Y2F1_HETAK3.960e-2344.94Choline transporter-like protein n=1 Tax=Heterosig... [more]
B7FYN0_PHATC4.010e-2348.35Choline transporter-like protein n=2 Tax=Phaeodact... [more]
A0A7S2HA85_9STRA4.040e-2346.74Choline transporter-like protein n=1 Tax=Helicothe... [more]
A0A6V1T854_HETAK1.840e-2251.85Choline transporter-like protein n=1 Tax=Heterosig... [more]
D8LIJ7_ECTSI2.300e-2146.07Choline transporter-like protein n=1 Tax=Ectocarpu... [more]
A0A6H5L007_9PHAE1.100e-2045.98Choline transporter-like protein n=1 Tax=Ectocarpu... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig103072contigH-elongata_contig103072:1093..2222 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score146.4
Seed ortholog evalue6.8e-33
Seed eggNOG ortholog2880.D7G036
EggNOG OGs2D6PU@1,2T2K5@2759
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Hectar predicted targeting categorysignal anchor
Ec32 ortholog descriptionCholine transporter-like
Ec32 orthologEc-12_007070.1
Exons3
Model size276
Cds size276
Stop0
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig103072.258.1prot_H-elongata_contig103072.258.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig103072 1093..2222 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929566.6324708-CDS-H-elongata_contig103072:1092..12301622929566.6324708-CDS-H-elongata_contig103072:1092..1230Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig103072 1093..1230 +
1691679073.3293035-CDS-H-elongata_contig103072:1092..12301691679073.3293035-CDS-H-elongata_contig103072:1092..1230Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig103072 1093..1230 +
1622929566.6446457-CDS-H-elongata_contig103072:1646..16861622929566.6446457-CDS-H-elongata_contig103072:1646..1686Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig103072 1647..1686 +
1691679073.340043-CDS-H-elongata_contig103072:1646..16861691679073.340043-CDS-H-elongata_contig103072:1646..1686Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig103072 1647..1686 +
1622929566.6550868-CDS-H-elongata_contig103072:2124..22221622929566.6550868-CDS-H-elongata_contig103072:2124..2222Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig103072 2125..2222 +
1691679073.3473508-CDS-H-elongata_contig103072:2124..22221691679073.3473508-CDS-H-elongata_contig103072:2124..2222Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig103072 2125..2222 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig103072.258.1

>prot_H-elongata_contig103072.258.1 ID=prot_H-elongata_contig103072.258.1|Name=mRNA_H-elongata_contig103072.258.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=92bp
MQEKLTAPPDFDGPVRDRKCTDVFFALLLIVLWVAMTIVGITSIQEGDVT
KLIAPTDYEGNLCGYDSGYEDLPFFYYVNYEGSGICIETCPT
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mRNA from alignment at H-elongata_contig103072:1093..2222+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig103072.258.1 ID=mRNA_H-elongata_contig103072.258.1|Name=mRNA_H-elongata_contig103072.258.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=1130bp|location=Sequence derived from alignment at H-elongata_contig103072:1093..2222+ (Himanthalia elongata Himel1 dioecious)
ATGCAGGAAAAGCTTACGGCTCCGCCTGACTTCGATGGGCCCGTGAGAGA TCGCAAGTGCACGGATGTGTTCTTCGCTCTGCTGCTTATCGTCCTTTGGG TTGCGATGACAATAGTGGGCATCACAAGCATTCAAGAGGTAGGTACAGCA CCTCGAGCAGAGAGCCACGCGGTATAAAAGGCTGTGAGGATAGCTCAACC ACGACCCACGGCTCACGAAAGCTTCCCCTGAAACCTTGCTCTTCTTGTTT TTTTTCTAGAGTTTACCTTTGTTTCATCGAACCATCGGATGATTGCATCG GATGATTACATTGGGGCTGCTACCGTGCTATATTAGAGGCTATCACCACC AACTGAAATTGGGCATCCCGTTCAGTACAGAATACATTCCCAAAACCTAA CAAATGAACTCATTCAAACTAGCATTACAGTCCTGATTACATTAGTTAGA ACAACAGCTGCACAGTAATTAGCTGCTTCTATTCTAGCTTTCCCACGAAC CGCTTTACTGACGATGCCCCCCATACTTTCCACCATGGTCTACTTGTCTG ACAGGGGGATGTGACGAAGCTCATCGCACCGACTGACTACGAAGGTAAAA ATAATCTCGGCCTCTCTCTCTTATATGCCTTCAATAAAGCTGGTGCGCCT TGCTTCTCATTTTACCCGAGATGGAAATTACTTGAATCTACTGTACCCAA GTGGTACATACGAGTAGGATATGGAAGGATATGGAAGAGTTGTTCTATTT TCCCTCCGCCGCTGCATTTTCCGTTTTGCGCTCTTTTTTATTACTAGAGC TATTTTCCCTTGAAAATTATAGGAAATAATAACAACCCATATTTCTGCCC AGCTTTTCTTAAAAGCTTGAAACTCATTCAAACCCTTTGAATATCCGCTC ACACTCTTTGACGTATTGGACGTAAATATAGCTCAGGAGCGTTTTTAATT TCATCCGATCCCTATAGCCCCTCGACCGCTGCATCATCACCACCAGCTTT GTATTAACGTTCCCTTCTCCCTCCCCGCCCAGGTAACTTATGCGGGTATG ATTCGGGCTACGAGGACCTGCCGTTCTTCTATTACGTGAACTACGAGGGC TCCGGCATTTGCATCGAGACATGTCCGACG
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Coding sequence (CDS) from alignment at H-elongata_contig103072:1093..2222+

>mRNA_H-elongata_contig103072.258.1 ID=mRNA_H-elongata_contig103072.258.1|Name=mRNA_H-elongata_contig103072.258.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=552bp|location=Sequence derived from alignment at H-elongata_contig103072:1093..2222+ (Himanthalia elongata Himel1 dioecious)
ATGCAGGAAAAGCTTACGGCTCCGCCTGACTTCGATGGGCCCGTGAGAGA
TCGCAAGTGCACGGATGTGTTCTTCGCTCTGCTGCTTATCGTCCTTTGGG
TTGCGATGACAATAGTGGGCATCACAAGCATTCAAGAGATGCAGGAAAAG
CTTACGGCTCCGCCTGACTTCGATGGGCCCGTGAGAGATCGCAAGTGCAC
GGATGTGTTCTTCGCTCTGCTGCTTATCGTCCTTTGGGTTGCGATGACAA
TAGTGGGCATCACAAGCATTCAAGAGGGGGATGTGACGAAGCTCATCGCA
CCGACTGACTACGAAGGGGGATGTGACGAAGCTCATCGCACCGACTGACT
ACGAAGGTAACTTATGCGGGTATGATTCGGGCTACGAGGACCTGCCGTTC
TTCTATTACGTGAACTACGAGGGCTCCGGCATTTGCATCGAGACATGTCC
GACGGTAACTTATGCGGGTATGATTCGGGCTACGAGGACCTGCCGTTCTT
CTATTACGTGAACTACGAGGGCTCCGGCATTTGCATCGAGACATGTCCGA
CG
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