prot_H-elongata_contig13623.2561.1 (polypeptide) Himanthalia elongata Himel1 dioecious

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_H-elongata_contig13623.2561.1
Unique Nameprot_H-elongata_contig13623.2561.1
Typepolypeptide
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Sequence length305
Homology
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BLAST of mRNA_H-elongata_contig13623.2561.1 vs. uniprot
Match: D8LN78_ECTSI (Tyrosine kinase specific for activated (GTP-bound) p21cdc42Hs n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LN78_ECTSI)

HSP 1 Score: 112 bits (279), Expect = 9.500e-24
Identity = 68/126 (53.97%), Postives = 82/126 (65.08%), Query Frame = 0 
Query:  119 GAYSAVPA-GAPAGVLRSAVLMYDAAELGGRLLAARLKAAEAGQSRDGDGDGVGWVGLAAALEFEGLSGTVKMDSSGNRRGMDVSFWLVEGKAVDGCWYTSGKEAARFTQDTGEVQLLQEIEWPAA 243
            G Y A P  G P G+L +  LM+DA ELG R+LAA      AG+     GDG GW GLAA + FEGLSG V+MD  GNR GMDVSF L+EG   DG  Y SGKEAAR+   +  VQLL+ ++WPA+
Sbjct:  437 GDYRASPDDGVPRGLLTATALMFDAVELGMRVLAA------AGRRVGRVGDG-GWAGLAAGVGFEGLSGKVEMDDLGNRMGMDVSFRLMEGVTADGASYVSGKEAARYDSASETVQLLRHMQWPAS 555
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BLAST of mRNA_H-elongata_contig13623.2561.1 vs. uniprot
Match: A0A6H5JK37_9PHAE (Protein kinase domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JK37_9PHAE)

HSP 1 Score: 106 bits (265), Expect = 6.580e-22
Identity = 61/117 (52.14%), Postives = 79/117 (67.52%), Query Frame = 0 
Query:  127 GAPAGVLRSAVLMYDAAELGGRLLAARLKAAEAGQSRDGDGDGVGWVGLAAALEFEGLSGTVKMDSSGNRRGMDVSFWLVEGKAVDGCWYTSGKEAARFTQDTGEVQLLQEIEWPAA 243
            G P G+L +  LM+DA ELG R+LAA      AG+     GDG GW GLAA + FEGLSG ++MD  GNR+GMDVSF L+EG    G  + SGKEAAR+   +  VQLL++++WPA+
Sbjct:  428 GVPRGLLTATALMFDAVELGMRVLAA------AGRRGGMVGDG-GWAGLAAGVGFEGLSGKLEMDDLGNRKGMDVSFRLMEGVTAYGISFVSGKEAARYDSASETVQLLRQMQWPAS 537
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig13623.2561.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
D8LN78_ECTSI9.500e-2453.97Tyrosine kinase specific for activated (GTP-bound)... [more]
A0A6H5JK37_9PHAE6.580e-2252.14Protein kinase domain-containing protein n=1 Tax=E... [more]
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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availablePHOBIUSNON_CYTOPLASMIC_DOMAINNon cytoplasmic domaincoord: 1..258
NoneNo IPR availablePHOBIUSCYTOPLASMIC_DOMAINCytoplasmic domaincoord: 280..305
NoneNo IPR availablePHOBIUSTRANSMEMBRANETransmembrane regioncoord: 259..279
NoneNo IPR availableTMHMMTMhelixcoord: 263..285

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig13623contigH-elongata_contig13623:4643..6634 +
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-09-29
Diamond blastp: OGS1.0 vs UniRef902022-09-16
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig13623.2561.1mRNA_H-elongata_contig13623.2561.1Himanthalia elongata Himel1 dioeciousmRNAH-elongata_contig13623 4643..6635 +


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_H-elongata_contig13623.2561.1 ID=prot_H-elongata_contig13623.2561.1|Name=mRNA_H-elongata_contig13623.2561.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=305bp
VGGEVLKGATPSRDGCHLKPPSRTQRAPFPLLSRLETIDDDRGSSDDTTS
EEPSVAHDGKFSSERHSCDEKDASCGPNAIGDVNPDLSSGAHVSNVKVDG
VGSKGLVAACGLRASLVDGAYSAVPAGAPAGVLRSAVLMYDAAELGGRLL
AARLKAAEAGQSRDGDGDGVGWVGLAAALEFEGLSGTVKMDSSGNRRGMD
VSFWLVEGKAVDGCWYTSGKEAARFTQDTGEVQLLQEIEWPAAQLPQQPR
QDGPWDSHVLNALLLGMTLLTAVAAFGAVQHLGIWWRYRRHPHQEQQEAR
PEVDA
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