mRNA_H-elongata_contig13605.2552.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig13605.2552.1
Unique NamemRNA_H-elongata_contig13605.2552.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
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BLAST of mRNA_H-elongata_contig13605.2552.1 vs. uniprot
Match: A0A6H5K1H2_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K1H2_9PHAE)

HSP 1 Score: 256 bits (655), Expect = 1.190e-71
Identity = 223/588 (37.93%), Postives = 274/588 (46.60%), Query Frame = 1 
Query:    1 SRKDLRSLTAGTEVEEKNTLAALHNIEACLEK----AVVSRGDSCVDTERTGKVKYMMGARRHAS---------------------GAVVTSGAPSAFAAAAVAALPPKLAWALGLSAAGNGNGRDDSSSCLPSETGGRGGXXXXXXXXXXXXXGRSWY--PNVDIVRQARASLEFRLARREHHKKLQHAAHAFT--FTSGSFTTDAASAGDATVPAVDRLPDNGTPQHS----LPDEKINSPPPLVMLSRAAAV---------------------------------------------STGLSMWLANDGTERRGLKTSATAVVDP------------LAADMSSAARAL------------------------VDLHAARIHELKPLMTRAIRRRRFALRRHWEELGDEYARVRNVWQVDAARWEGKMEEEEAKEALASGTTGTGGNIGIGGGGEEGDGS-------------------RSERRGGGRRLSDIVRSDYEEAEVVKKFEDRHKEEERIRNGAGNVPSMFTAMERRQLPEYVDISNARGTKDGLPARCAGLPRTEACPVGCNCAAAVEVERKRLNLW 1365
            SRK+LR LT+GTEVEE+ TLAAL ++EACLE+    A  +     V+ E+   V     ++  +S                     G  +T  A       AVAALP +LA ALGL A G+G   +   S  P+  GG G              GR+ +  P+VD+VRQARAS+EFR+ARR H  +L++AA A       G+       A  A   AV    ++G P  +    LP     SPP +V   RA A                                               +G  + +A    E +    +A A +D             L+ + ++AA A                           +HAAR+ ELKP+MTRAIRRR+  LRR WE+LGDEYA + N W VD  RWE KMEEE                                                RSERR GGRRLSD+VRSDYEEAEVVKKFED+HKEEERIR GA  VPSM TA+ERRQLPEY D  N+RGT D LPARC GLP   ACP GCNC AAVE ERK LNLW
Sbjct: 1526 SRKELRRLTSGTEVEERRTLAALRDLEACLEEGRIAAATAASTPAVEAEKALVVPDASSSQAKSSREANNPGTEEIIPXXXXXXXXGGTLTP-AVXXXXXTAVAALPAELATALGL-AEGDGKRGEGGGSNQPAVAGGGG--------VGLDHEGRNGFSPPHVDLVRQARASVEFRVARRRHKGELENAAAAAATLVVGGTPGPPVGKAAGAAPVAVTARSEHGGPDEASAKGLPGPS-QSPPAVVATERAGASPGSKAAXXXXXARKGPSGLRTRVPTGAPVSHLFRARVDAAPGGVPKSGRDVAIARVMRENQARAVAAQAELDERLLGLPRNTSPSLSGEAAAAAAAAQASALGTXXXXXXXXXXXXXXXXXXXIHAARLRELKPVMTRAIRRRQLELRRRWEKLGDEYAGLHNAWHVDMLRWEEKMEEEXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXASLRSERR-GGRRLSDVVRSDYEEAEVVKKFEDKHKEEERIRKGAVEVPSMLTAVERRQLPEYRDSWNSRGTTDALPARCRGLPADAACPAGCNCPAAVEAERKLLNLW 2101
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BLAST of mRNA_H-elongata_contig13605.2552.1 vs. uniprot
Match: D8LGU8_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LGU8_ECTSI)

HSP 1 Score: 238 bits (606), Expect = 3.570e-65
Identity = 202/509 (39.69%), Postives = 244/509 (47.94%), Query Frame = 1 
Query:    1 SRKDLRSLTAGTEVEEKNTLAALHNIEACLEK----AVVSRGDSCVDTERTGKVKYMMGARRHASGAVVTSGAPSAFAAAA--------------------VAALPPKLAWALGLSAAGNGNGRDDSSSCLPSETGGRGGXXXXXXXXXXXXXGRSWY--PNVDIVRQARASLEFRLARREHHKKLQHAAHAFTFTSGSFTTDAASAGDATVPAVDRLPDNGTP--QHSLPDEKI--------NSPPPLVMLSRAAAVSTGLSMWLANDGTERRGLKTSATAVVDPLAADMSSAARALVDLHAARIHELKPLMTRAIRRRRFALRRHWEELGDEYARVRNVWQVDAARWEGKMEEEEAKEALASGTTGTGGNIGIGGGGE------------------EGDGSRSERRGGGRRLSDIVRSDYEEAEVVKKFEDRHKEEERIRNGAGNVPSMFTAMERRQLPEYVDISNARGTKDGLPARCAGLPRTEACPVGCNCAAAVEVERKRLNLW 1365
            SRK+LR LT+GTEVEE+ TLAAL ++EACLE+    A  +      + E+   V     ++  +SG     G     A+ +                     AALP +LA ALGL A G+G   +   S  P+  GG                GR+ +  P+VD+VRQARAS+EFR+ARR +  +L++AA                                    +H  PDE           SPP +V   RA A S G S   A     R+G     T V  P  A +S   RA VD     + +    +  A   R   LRR WE+LGD+YA + N W VD  RWE KMEE                                            G   RSERR GGRRLSD+VRSDYEEAEVVKKFED+HKEEERIR GA  VPSM TA+ERRQLPEY D  N+RGT DGLPARC GLP   ACP GCNC AAVE ERK  NLW
Sbjct: 1391 SRKELRRLTSGTEVEERRTLAALRDLEACLEEGRIAAATAASTPVAEAEKAPVVADASASQAKSSGEANNPGTEKTIASRSSANNDGGTLTPAVAAXXXXXXAALPAELATALGL-AEGDGKRSEGGGSDQPAVAGG--------DRVGVDHEGRNGFSPPHVDLVRQARASVEFRVARRRYKGELENAAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXRSEHGGPDESSAKGLPGPSQSPPGVVTTERAGA-SPG-SKAAAASAPARKGPSGLRTRV--PTGAPVSHLFRARVDAAPGGVPKSGRDVAIARVMRENQLRRRWEKLGDQYAGLHNAWHVDMLRWEEKMEEXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXHGASLRSERR-GGRRLSDVVRSDYEEAEVVKKFEDKHKEEERIRKGAVEVPSMLTAVERRQLPEYRDSWNSRGTTDGLPARCRGLPADAACPAGCNCPAAVEAERKLSNLW 1885
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig13605.2552.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
A0A6H5K1H2_9PHAE1.190e-7137.93Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D8LGU8_ECTSI3.570e-6539.69Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig13605contigH-elongata_contig13605:6561..8273 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score246.9
Seed ortholog evalue1.8e-62
Seed eggNOG ortholog2880.D8LGU8
KEGG koko:K04650
KEGG Pathwayko01522,ko04919,ko05202,map01522,map04919,map05202
EggNOG free text desc.regulation of glycolytic process by negative regulation of transcription from RNA polymerase II promoter
EggNOG OGsKOG1878@1,KOG1878@2759
COG Functional cat.K
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko01009
Hectar predicted targeting categoryother localisation
Ec32 ortholog descriptionSANT/Myb domain transcription factor
Ec32 orthologEc-28_001270.1
Exons3
Model size1365
Cds size1365
Stop0
Start0
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig13605.2552.1prot_H-elongata_contig13605.2552.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig13605 6561..8273 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929808.2861745-CDS-H-elongata_contig13605:6560..68411622929808.2861745-CDS-H-elongata_contig13605:6560..6841Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig13605 6561..6841 +
1691679165.4317458-CDS-H-elongata_contig13605:6560..68411691679165.4317458-CDS-H-elongata_contig13605:6560..6841Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig13605 6561..6841 +
1622929808.305678-CDS-H-elongata_contig13605:6931..73471622929808.305678-CDS-H-elongata_contig13605:6931..7347Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig13605 6932..7347 +
1691679165.4432437-CDS-H-elongata_contig13605:6931..73471691679165.4432437-CDS-H-elongata_contig13605:6931..7347Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig13605 6932..7347 +
1622929808.3220363-CDS-H-elongata_contig13605:7605..82731622929808.3220363-CDS-H-elongata_contig13605:7605..8273Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig13605 7606..8273 +
1691679165.451827-CDS-H-elongata_contig13605:7605..82731691679165.451827-CDS-H-elongata_contig13605:7605..8273Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig13605 7606..8273 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig13605.2552.1

>prot_H-elongata_contig13605.2552.1 ID=prot_H-elongata_contig13605.2552.1|Name=mRNA_H-elongata_contig13605.2552.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=455bp
SRKDLRSLTAGTEVEEKNTLAALHNIEACLEKAVVSRGDSCVDTERTGKV
KYMMGARRHASGAVVTSGAPSAFAAAAVAALPPKLAWALGLSAAGNGNGR
DDSSSCLPSETGGRGGDSGSSSGSGPGPGGRSWYPNVDIVRQARASLEFR
LARREHHKKLQHAAHAFTFTSGSFTTDAASAGDATVPAVDRLPDNGTPQH
SLPDEKINSPPPLVMLSRAAAVSTGLSMWLANDGTERRGLKTSATAVVDP
LAADMSSAARALVDLHAARIHELKPLMTRAIRRRRFALRRHWEELGDEYA
RVRNVWQVDAARWEGKMEEEEAKEALASGTTGTGGNIGIGGGGEEGDGSR
SERRGGGRRLSDIVRSDYEEAEVVKKFEDRHKEEERIRNGAGNVPSMFTA
MERRQLPEYVDISNARGTKDGLPARCAGLPRTEACPVGCNCAAAVEVERK
RLNLW
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mRNA from alignment at H-elongata_contig13605:6561..8273+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig13605.2552.1 ID=mRNA_H-elongata_contig13605.2552.1|Name=mRNA_H-elongata_contig13605.2552.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=1713bp|location=Sequence derived from alignment at H-elongata_contig13605:6561..8273+ (Himanthalia elongata Himel1 dioecious)
TCGAGGAAGGACCTGCGAAGCCTCACGGCGGGGACGGAAGTCGAAGAAAA
AAATACGCTCGCTGCTCTGCACAATATCGAAGCGTGCCTGGAAAAGGCCG
TCGTTTCTAGAGGCGATTCGTGCGTTGACACCGAACGAACCGGTAAAGTC
AAGTATATGATGGGGGCACGGAGGCACGCAAGTGGCGCCGTGGTTACCAG
TGGTGCTCCTTCGGCGTTTGCGGCAGCCGCCGTCGCCGCCCTTCCCCCGA
AGTTAGCGTGGGCTTTGGGCCTCTCGGCGGCGTCACGTTGCGCTGCTGAT
GCCGGTGATAACGAGCGGATGACATGCCGTGTCGTTAAAAGCAACAAGAT
TAGTGATGATGTTGGTACCAGTGGCAACGGCAACGGCCGGGATGACAGTA
GCAGTTGTCTTCCGTCGGAGACAGGGGGACGCGGCGGTGATTCCGGCTCT
AGTTCCGGTTCCGGTCCCGGTCCCGGTGGCCGCTCCTGGTATCCGAACGT
TGACATAGTGCGACAGGCGAGAGCGTCCTTGGAGTTTCGCCTGGCCCGCC
GGGAACACCACAAGAAGCTCCAGCACGCAGCACATGCTTTCACTTTCACA
TCCGGCTCCTTCACTACCGACGCAGCATCAGCCGGAGACGCCACGGTGCC
AGCGGTGGATAGACTGCCTGACAACGGAACTCCCCAGCATTCCCTTCCCG
ACGAAAAAATAAACTCTCCTCCCCCATTAGTGATGTTATCCCGTGCCGCC
GCGGTGTCCACTGGCTTGAGTATGTGGCTGGCGAATGGTGGAGTGGTCAC
CGACCTGTTTTACTCTCGCGTAGGTGAAGACGCGATGGAAGAAGGGGCTA
CGGCGGTGGCCAAGTCGACTCCGGCGGAAGCGATGTCGAGGGTCCTGCGC
GAGAACCAGGCACGGGCCGGCTCCGCTCGCACCGAGGTGATCGTCCCCCG
GCGCGCCGGGTCTTCCCTATTGCCGGCTCGCCTTCGAGTCAAGTTCGGCA
GGTCCAAACCCACGGCGAAATTTGTAGAAAATTTTGGCGATAGAGATGGC
ACGGAACGTAGAGGATTGAAAACATCGGCAACGGCGGTGGTTGATCCATT
GGCGGCCGATATGTCGAGCGCGGCTCGTGCTCTGGTCGACCTCCACGCGG
CAAGGATCCACGAGTTGAAGCCCCTGATGACGCGCGCGATTCGGCGTCGA
CGCTTTGCTCTCCGGCGACACTGGGAGGAGCTTGGGGACGAGTACGCCAG
GGTTCGTAACGTCTGGCAAGTCGATGCCGCGCGATGGGAAGGAAAGATGG
AGGAAGAAGAGGCTAAGGAGGCCTTGGCAAGCGGGACGACGGGGACTGGC
GGTAACATAGGCATAGGCGGCGGTGGAGAGGAAGGCGACGGGAGCAGGTC
GGAGAGGCGGGGCGGCGGGCGTCGGCTGAGTGACATCGTCCGGTCGGATT
ACGAGGAGGCGGAGGTTGTGAAAAAGTTTGAGGACCGGCACAAGGAGGAG
GAACGCATCCGGAATGGCGCAGGAAACGTACCGTCGATGTTCACAGCGAT
GGAGCGTCGCCAGCTGCCGGAGTACGTTGACATATCCAACGCGCGGGGTA
CTAAGGATGGCCTGCCTGCCCGCTGCGCGGGTTTGCCCCGGACCGAGGCA
TGTCCTGTCGGGTGCAACTGCGCCGCGGCGGTGGAGGTCGAGCGGAAGCG
GCTGAACCTGTGG
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Coding sequence (CDS) from alignment at H-elongata_contig13605:6561..8273+

>mRNA_H-elongata_contig13605.2552.1 ID=mRNA_H-elongata_contig13605.2552.1|Name=mRNA_H-elongata_contig13605.2552.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=2730bp|location=Sequence derived from alignment at H-elongata_contig13605:6561..8273+ (Himanthalia elongata Himel1 dioecious)
TCGAGGAAGGACCTGCGAAGCCTCACGGCGGGGACGGAAGTCGAAGAAAA
AAATACGCTCGCTGCTCTGCACAATATCGAAGCGTGCCTGGAAAAGGCCG
TCGTTTCTAGAGGCGATTCGTGCGTTGACACCGAACGAACCGGTAAAGTC
AAGTATATGATGGGGGCACGGAGGCACGCAAGTGGCGCCGTGGTTACCAG
TGGTGCTCCTTCGGCGTTTGCGGCAGCCGCCGTCGCCGCCCTTCCCCCGA
AGTTAGCGTGGGCTTTGGGCCTCTCGGCGGCTCGAGGAAGGACCTGCGAA
GCCTCACGGCGGGGACGGAAGTCGAAGAAAAAAATACGCTCGCTGCTCTG
CACAATATCGAAGCGTGCCTGGAAAAGGCCGTCGTTTCTAGAGGCGATTC
GTGCGTTGACACCGAACGAACCGGTAAAGTCAAGTATATGATGGGGGCAC
GGAGGCACGCAAGTGGCGCCGTGGTTACCAGTGGTGCTCCTTCGGCGTTT
GCGGCAGCCGCCGTCGCCGCCCTTCCCCCGAAGTTAGCGTGGGCTTTGGG
CCTCTCGGCGGCTGGCAACGGCAACGGCCGGGATGACAGTAGCAGTTGTC
TTCCGTCGGAGACAGGGGGACGCGGCGGTGATTCCGGCTCTAGTTCCGGT
TCCGGTCCCGGTCCCGGTGGCCGCTCCTGGTATCCGAACGTTGACATAGT
GCGACAGGCGAGAGCGTCCTTGGAGTTTCGCCTGGCCCGCCGGGAACACC
ACAAGAAGCTCCAGCACGCAGCACATGCTTTCACTTTCACATCCGGCTCC
TTCACTACCGACGCAGCATCAGCCGGAGACGCCACGGTGCCAGCGGTGGA
TAGACTGCCTGACAACGGAACTCCCCAGCATTCCCTTCCCGACGAAAAAA
TAAACTCTCCTCCCCCATTAGTGATGTTATCCCGTGCCGCCGCGGTGTCC
ACTGGCTTGAGTATGTGGCTGGCGAATGTGGCAACGGCAACGGCCGGGAT
GACAGTAGCAGTTGTCTTCCGTCGGAGACAGGGGGACGCGGCGGTGATTC
CGGCTCTAGTTCCGGTTCCGGTCCCGGTCCCGGTGGCCGCTCCTGGTATC
CGAACGTTGACATAGTGCGACAGGCGAGAGCGTCCTTGGAGTTTCGCCTG
GCCCGCCGGGAACACCACAAGAAGCTCCAGCACGCAGCACATGCTTTCAC
TTTCACATCCGGCTCCTTCACTACCGACGCAGCATCAGCCGGAGACGCCA
CGGTGCCAGCGGTGGATAGACTGCCTGACAACGGAACTCCCCAGCATTCC
CTTCCCGACGAAAAAATAAACTCTCCTCCCCCATTAGTGATGTTATCCCG
TGCCGCCGCGGTGTCCACTGGCTTGAGTATGTGGCTGGCGAATGATGGCA
CGGAACGTAGAGGATTGAAAACATCGGCAACGGCGGTGGTTGATCCATTG
GCGGCCGATATGTCGAGCGCGGCTCGTGCTCTGGTCGACCTCCACGCGGC
AAGGATCCACGAGTTGAAGCCCCTGATGACGCGCGCGATTCGGCGTCGAC
GCTTTGCTCTCCGGCGACACTGGGAGGAGCTTGGGGACGAGTACGCCAGG
GTTCGTAACGTCTGGCAAGTCGATGCCGCGCGATGGGAAGGAAAGATGGA
GGAAGAAGAGGCTAAGGAGGCCTTGGCAAGCGGGACGACGGGGACTGGCG
GTAACATAGGCATAGGCGGCGGTGGAGAGGAAGGCGACGGGAGCAGGTCG
GAGAGGCGGGGCGGCGGGCGTCGGCTGAGTGACATCGTCCGGTCGGATTA
CGAGGAGGCGGAGGTTGTGAAAAAGTTTGAGGACCGGCACAAGGAGGAGG
AACGCATCCGGAATGGCGCAGGAAACGTACCGTCGATGTTCACAGCGATG
GAGCGTCGCCAGCTGCCGGAGTACGTTGACATATCCAACGCGCGGGGTAC
TAAGGATGGCCTGCCTGCCCGCTGCGCGGGTTTGCCCCGGACCGAGGCAT
GTCCTGTCGGGTGCAACTGCGCCGCGGCGGTGGAGGTCGAGCGGAAGCGG
CTGAACCTGTGGATGGCACGGAACGTAGAGGATTGAAAACATCGGCAACG
GCGGTGGTTGATCCATTGGCGGCCGATATGTCGAGCGCGGCTCGTGCTCT
GGTCGACCTCCACGCGGCAAGGATCCACGAGTTGAAGCCCCTGATGACGC
GCGCGATTCGGCGTCGACGCTTTGCTCTCCGGCGACACTGGGAGGAGCTT
GGGGACGAGTACGCCAGGGTTCGTAACGTCTGGCAAGTCGATGCCGCGCG
ATGGGAAGGAAAGATGGAGGAAGAAGAGGCTAAGGAGGCCTTGGCAAGCG
GGACGACGGGGACTGGCGGTAACATAGGCATAGGCGGCGGTGGAGAGGAA
GGCGACGGGAGCAGGTCGGAGAGGCGGGGCGGCGGGCGTCGGCTGAGTGA
CATCGTCCGGTCGGATTACGAGGAGGCGGAGGTTGTGAAAAAGTTTGAGG
ACCGGCACAAGGAGGAGGAACGCATCCGGAATGGCGCAGGAAACGTACCG
TCGATGTTCACAGCGATGGAGCGTCGCCAGCTGCCGGAGTACGTTGACAT
ATCCAACGCGCGGGGTACTAAGGATGGCCTGCCTGCCCGCTGCGCGGGTT
TGCCCCGGACCGAGGCATGTCCTGTCGGGTGCAACTGCGCCGCGGCGGTG
GAGGTCGAGCGGAAGCGGCTGAACCTGTGG
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