mRNA_H-elongata_contig135882.2530.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig135882.2530.1
Unique NamemRNA_H-elongata_contig135882.2530.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
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BLAST of mRNA_H-elongata_contig135882.2530.1 vs. uniprot
Match: D7G504_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G504_ECTSI)

HSP 1 Score: 94.0 bits (232), Expect = 3.920e-23
Identity = 63/93 (67.74%), Postives = 68/93 (73.12%), Query Frame = 1 
Query:    1 MAEAALKSFSSGRDQGEMDELKKLILSEKARTKHLSDGAGGGVGGSGGRNVDGGDVSDDDEGGGDTREREGGRGRI------SGAKDKKQKGT 261
            M+ A LK  SSGRD GEM+ELKKLILSEKARTKH SDG GGG G    R VDGGDVSDDDEG GDTR+R GG          +GAK+KKQKGT
Sbjct:    1 MSAAQLKQVSSGRDLGEMEELKKLILSEKARTKH-SDGGGGGAGE---RRVDGGDVSDDDEGEGDTRDRGGGXXXXXXXXXXAGAKEKKQKGT 89
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BLAST of mRNA_H-elongata_contig135882.2530.1 vs. uniprot
Match: A0A6H5L4J3_9PHAE (RED_N domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L4J3_9PHAE)

HSP 1 Score: 93.2 bits (230), Expect = 3.120e-20
Identity = 63/93 (67.74%), Postives = 67/93 (72.04%), Query Frame = 1 
Query:    1 MAEAALKSFSSGRDQGEMDELKKLILSEKARTKHLSDGAGGGVGGSGGRNVDGGDVSDDDEGGGDTREREGGRGRIS------GAKDKKQKGT 261
            M+ A LK  SSGRD GEM+ELKKLILSEKARTKH SDG GGG G    R VDGGDVSDDDEG GDTR+R GG           GAK+KKQKGT
Sbjct:    1 MSAAQLKQVSSGRDLGEMEELKKLILSEKARTKH-SDGGGGGAGE---RRVDGGDVSDDDEGEGDTRDRGGGXXXXXXXXXXXGAKEKKQKGT 89
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig135882.2530.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
D7G504_ECTSI3.920e-2367.74Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A6H5L4J3_9PHAE3.120e-2067.74RED_N domain-containing protein n=1 Tax=Ectocarpus... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig135882contigH-elongata_contig135882:311..953 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Ec32 ortholog descriptionhypothetical protein
Ec32 orthologEc-04_002410.1
Hectar predicted targeting categoryother localisation
Exons2
Model size264
Cds size264
Stop1
Start1
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929806.4508195-CDS-H-elongata_contig135882:310..3761622929806.4508195-CDS-H-elongata_contig135882:310..376Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig135882 311..376 +
1691679164.7055676-CDS-H-elongata_contig135882:310..3761691679164.7055676-CDS-H-elongata_contig135882:310..376Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig135882 311..376 +
1622929806.468241-CDS-H-elongata_contig135882:755..9531622929806.468241-CDS-H-elongata_contig135882:755..953Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig135882 756..953 +
1691679164.7181063-CDS-H-elongata_contig135882:755..9531691679164.7181063-CDS-H-elongata_contig135882:755..953Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig135882 756..953 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig135882.2530.1prot_H-elongata_contig135882.2530.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig135882 311..953 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig135882.2530.1

>prot_H-elongata_contig135882.2530.1 ID=prot_H-elongata_contig135882.2530.1|Name=mRNA_H-elongata_contig135882.2530.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=88bp
MAEAALKSFSSGRDQGEMDELKKLILSEKARTKHLSDGAGGGVGGSGGRN
VDGGDVSDDDEGGGDTREREGGRGRISGAKDKKQKGT*
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mRNA from alignment at H-elongata_contig135882:311..953+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig135882.2530.1 ID=mRNA_H-elongata_contig135882.2530.1|Name=mRNA_H-elongata_contig135882.2530.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=643bp|location=Sequence derived from alignment at H-elongata_contig135882:311..953+ (Himanthalia elongata Himel1 dioecious)
ATGGCGGAGGCTGCACTAAAGAGCTTTTCCAGTGGTAGAGACCAAGGAGA
GATGGATGAGCTCAAGGTAATGAAACGTTCCTTGTGAGGGGAGCTCTCGT
AACCACTACATAGTATCCAAGTGCTGTACTTCGCTGTTCGACTCAACCCC
TTAGCCATATGGTACTAATATATCGTAATTTGATGCTGTCGCCAGAGGTG
GGATCGAAAATGTGGCTACATTATATATTATCTATTGTACGTGCATCAGG
ATTTTGAAGGTAAATATGCTTGTACATCCGTCATAGTCATAGGCATCTGA
CCTCCCCATGTTCTATTTCTATAGAACAGCTGTGCGAACGATCTTCGATC
GGAATGCAAACGCGCGACGACATCAGTATCCAAAGGACGTCACAGGGGCT
GCTCGCTTAGCATGCCCTCTTCGGTGCCCTTGCGCTAATTCACAGAAACT
CATATTGAGCGAAAAGGCGAGGACCAAACACCTTTCAGACGGAGCCGGGG
GCGGGGTAGGGGGAAGTGGGGGAAGGAACGTCGATGGTGGCGATGTCTCC
GATGACGACGAGGGAGGGGGCGATACCCGGGAGAGGGAAGGGGGGCGTGG
ACGGATTAGCGGGGCAAAGGACAAGAAGCAGAAGGGAACGTGA
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Coding sequence (CDS) from alignment at H-elongata_contig135882:311..953+

>mRNA_H-elongata_contig135882.2530.1 ID=mRNA_H-elongata_contig135882.2530.1|Name=mRNA_H-elongata_contig135882.2530.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=528bp|location=Sequence derived from alignment at H-elongata_contig135882:311..953+ (Himanthalia elongata Himel1 dioecious)
ATGGCGGAGGCTGCACTAAAGAGCTTTTCCAGTGGTAGAGACCAAGGAGA
GATGGATGAGCTCAAGATGGCGGAGGCTGCACTAAAGAGCTTTTCCAGTG
GTAGAGACCAAGGAGAGATGGATGAGCTCAAGAAACTCATATTGAGCGAA
AAGGCGAGGACCAAACACCTTTCAGACGGAGCCGGGGGCGGGGTAGGGGG
AAGTGGGGGAAGGAACGTCGATGGTGGCGATGTCTCCGATGACGACGAGG
GAGGGGGCGATACCCGGGAGAGGGAAGGGGGGCGTGGACGGATTAGCGGG
GCAAAGGACAAGAAGCAGAAGGGAACGTGAAAACTCATATTGAGCGAAAA
GGCGAGGACCAAACACCTTTCAGACGGAGCCGGGGGCGGGGTAGGGGGAA
GTGGGGGAAGGAACGTCGATGGTGGCGATGTCTCCGATGACGACGAGGGA
GGGGGCGATACCCGGGAGAGGGAAGGGGGGCGTGGACGGATTAGCGGGGC
AAAGGACAAGAAGCAGAAGGGAACGTGA
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