mRNA_H-elongata_contig135757.2524.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig135757.2524.1
Unique NamemRNA_H-elongata_contig135757.2524.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
[Close]
BLAST of mRNA_H-elongata_contig135757.2524.1 vs. uniprot
Match: A0A7S2XU55_9STRA (Hypothetical protein (Fragment) n=1 Tax=Fibrocapsa japonica TaxID=94617 RepID=A0A7S2XU55_9STRA)

HSP 1 Score: 187 bits (475), Expect = 1.380e-57
Identity = 108/185 (58.38%), Postives = 117/185 (63.24%), Query Frame = 1 
Query:    4 QYFGKLMDEVQEDELNAEEAKERKILRMLLKIKNGTPPQRKTALRQITDKARIFGAGALFNQILPLLMSPTLEDQERHLLVKVEIYSYYSSLLWFSCPFYCCLQLLRVCLSIMVVYLYDLCAVFVAVHSAFPPRRQPCVWSCGHQQVIDRILYKLDDLVRPYVHKILVVIEPLLIDEDYYARVEG 558
            QYF KLM+EV E++L+AEEAKERKIL++LLKIKNGTPPQRKTALRQ+TDKAR FGAG LFNQILPLLMSPTLEDQERHLLVKV                                                                +DR+LYKLDDLVRPYVHKILVVIEPLLIDEDYYARVEG
Sbjct:   18 QYFSKLMEEVDEEDLSAEEAKERKILKLLLKIKNGTPPQRKTALRQVTDKAREFGAGPLFNQILPLLMSPTLEDQERHLLVKV----------------------------------------------------------------VDRVLYKLDDLVRPYVHKILVVIEPLLIDEDYYARVEG 138
[Close]
BLAST of mRNA_H-elongata_contig135757.2524.1 vs. uniprot
Match: A0A7S2FXW6_9STRA (Hypothetical protein (Fragment) n=1 Tax=Florenciella parvula TaxID=236787 RepID=A0A7S2FXW6_9STRA)

HSP 1 Score: 187 bits (475), Expect = 1.520e-57
Identity = 108/184 (58.70%), Postives = 117/184 (63.59%), Query Frame = 1 
Query:    7 YFGKLMDEVQEDELNAEEAKERKILRMLLKIKNGTPPQRKTALRQITDKARIFGAGALFNQILPLLMSPTLEDQERHLLVKVEIYSYYSSLLWFSCPFYCCLQLLRVCLSIMVVYLYDLCAVFVAVHSAFPPRRQPCVWSCGHQQVIDRILYKLDDLVRPYVHKILVVIEPLLIDEDYYARVEG 558
            YFGKLMDEV++++L+ EEAKERKI+++LLKIKNGTPPQRKTALRQ+TDKAR FGAG LFNQILPLLMSPTLEDQERHLLVKV                                                                IDRILYKLDDLVRPYVHKILVVIEPLLIDEDYYARVEG
Sbjct:   12 YFGKLMDEVEDEDLSLEEAKERKIMKLLLKIKNGTPPQRKTALRQVTDKAREFGAGPLFNQILPLLMSPTLEDQERHLLVKV----------------------------------------------------------------IDRILYKLDDLVRPYVHKILVVIEPLLIDEDYYARVEG 131
[Close]
BLAST of mRNA_H-elongata_contig135757.2524.1 vs. uniprot
Match: D7FI14_ECTSI (SF3b1 domain-containing protein (Fragment) n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FI14_ECTSI)

HSP 1 Score: 196 bits (498), Expect = 2.080e-55
Identity = 115/185 (62.16%), Postives = 118/185 (63.78%), Query Frame = 1 
Query:    4 QYFGKLMDEVQEDELNAEEAKERKILRMLLKIKNGTPPQRKTALRQITDKARIFGAGALFNQILPLLMSPTLEDQERHLLVKVEIYSYYSSLLWFSCPFYCCLQLLRVCLSIMVVYLYDLCAVFVAVHSAFPPRRQPCVWSCGHQQVIDRILYKLDDLVRPYVHKILVVIEPLLIDEDYYARVEG 558
            QYFGKLMDEV ++ELNAEEAKERKILRMLLKIKNGTPPQRKTALRQITDKAR FGAG LFNQILPLLMSPTLEDQERHLLVKV                                                                IDR+LYKLDDLVRPYVHKILVVIEPLLIDEDYYARVEG
Sbjct:  468 QYFGKLMDEVDDEELNAEEAKERKILRMLLKIKNGTPPQRKTALRQITDKARDFGAGPLFNQILPLLMSPTLEDQERHLLVKV----------------------------------------------------------------IDRVLYKLDDLVRPYVHKILVVIEPLLIDEDYYARVEG 588
[Close]
BLAST of mRNA_H-elongata_contig135757.2524.1 vs. uniprot
Match: A0A6H5JJ74_9PHAE (TOG domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JJ74_9PHAE)

HSP 1 Score: 196 bits (498), Expect = 1.270e-54
Identity = 115/185 (62.16%), Postives = 118/185 (63.78%), Query Frame = 1 
Query:    4 QYFGKLMDEVQEDELNAEEAKERKILRMLLKIKNGTPPQRKTALRQITDKARIFGAGALFNQILPLLMSPTLEDQERHLLVKVEIYSYYSSLLWFSCPFYCCLQLLRVCLSIMVVYLYDLCAVFVAVHSAFPPRRQPCVWSCGHQQVIDRILYKLDDLVRPYVHKILVVIEPLLIDEDYYARVEG 558
            QYFGKLMDEV ++ELNAEEAKERKILRMLLKIKNGTPPQRKTALRQITDKAR FGAG LFNQILPLLMSPTLEDQERHLLVKV                                                                IDR+LYKLDDLVRPYVHKILVVIEPLLIDEDYYARVEG
Sbjct:  548 QYFGKLMDEVDDEELNAEEAKERKILRMLLKIKNGTPPQRKTALRQITDKARDFGAGPLFNQILPLLMSPTLEDQERHLLVKV----------------------------------------------------------------IDRVLYKLDDLVRPYVHKILVVIEPLLIDEDYYARVEG 668
[Close]
BLAST of mRNA_H-elongata_contig135757.2524.1 vs. uniprot
Match: A0A2P4X7D7_9STRA (Splicing factor 3B subunit 1 (Fragment) n=1 Tax=Phytophthora palmivora var. palmivora TaxID=611791 RepID=A0A2P4X7D7_9STRA)

HSP 1 Score: 187 bits (474), Expect = 4.740e-53
Identity = 109/185 (58.92%), Postives = 116/185 (62.70%), Query Frame = 1 
Query:    4 QYFGKLMDEVQEDELNAEEAKERKILRMLLKIKNGTPPQRKTALRQITDKARIFGAGALFNQILPLLMSPTLEDQERHLLVKVEIYSYYSSLLWFSCPFYCCLQLLRVCLSIMVVYLYDLCAVFVAVHSAFPPRRQPCVWSCGHQQVIDRILYKLDDLVRPYVHKILVVIEPLLIDEDYYARVEG 558
            QYFGKLMDEV E+EL+ E A ERKI+R+LLKIKNGTPPQRKTALRQ+TDKAR FGAGALFNQILPLLM+PTLEDQERHLLVKV                                                                IDR+LYKLDDLVRPYVHKILVVIEPLLIDEDYYARVEG
Sbjct:  404 QYFGKLMDEVNEEELDPEAAMERKIMRLLLKIKNGTPPQRKTALRQLTDKAREFGAGALFNQILPLLMAPTLEDQERHLLVKV----------------------------------------------------------------IDRVLYKLDDLVRPYVHKILVVIEPLLIDEDYYARVEG 524
[Close]
BLAST of mRNA_H-elongata_contig135757.2524.1 vs. uniprot
Match: A0A3M7PDF5_BRAPC (Splicing factor 3B subunit (Fragment) n=1 Tax=Brachionus plicatilis TaxID=10195 RepID=A0A3M7PDF5_BRAPC)

HSP 1 Score: 177 bits (448), Expect = 3.900e-52
Identity = 104/186 (55.91%), Postives = 113/186 (60.75%), Query Frame = 1 
Query:    1 VQYFGKLMDEVQEDELNAEEAKERKILRMLLKIKNGTPPQRKTALRQITDKARIFGAGALFNQILPLLMSPTLEDQERHLLVKVEIYSYYSSLLWFSCPFYCCLQLLRVCLSIMVVYLYDLCAVFVAVHSAFPPRRQPCVWSCGHQQVIDRILYKLDDLVRPYVHKILVVIEPLLIDEDYYARVEG 558
            +QYF KL+D V +D L  E+AKERKI+++LLKIKNGTPP RK+ALRQITDKAR FGAG LFNQILPLLMSP+LEDQERHLLVKV                                                                IDRILYKLDDLVRPYVHKILVVIEPLLIDEDYYARVEG
Sbjct:   31 LQYFNKLLDNVDDDSLPPEQAKERKIMKLLLKIKNGTPPMRKSALRQITDKAREFGAGPLFNQILPLLMSPSLEDQERHLLVKV----------------------------------------------------------------IDRILYKLDDLVRPYVHKILVVIEPLLIDEDYYARVEG 152
[Close]
BLAST of mRNA_H-elongata_contig135757.2524.1 vs. uniprot
Match: A0A662WMW2_9STRA (SF3b1 domain-containing protein n=2 Tax=Nothophytophthora sp. Chile5 TaxID=2483409 RepID=A0A662WMW2_9STRA)

HSP 1 Score: 188 bits (478), Expect = 6.180e-52
Identity = 110/185 (59.46%), Postives = 117/185 (63.24%), Query Frame = 1 
Query:    4 QYFGKLMDEVQEDELNAEEAKERKILRMLLKIKNGTPPQRKTALRQITDKARIFGAGALFNQILPLLMSPTLEDQERHLLVKVEIYSYYSSLLWFSCPFYCCLQLLRVCLSIMVVYLYDLCAVFVAVHSAFPPRRQPCVWSCGHQQVIDRILYKLDDLVRPYVHKILVVIEPLLIDEDYYARVEG 558
            QYFGKLMDEV E+ L+AE AKERKI+R+LLKIKNGTPPQRKTALRQ+TDKAR FGAGALFNQILPLLM+PTLEDQERHLLVKV                                                                IDR+LYKLDDLVRPYVHKILVVIEPLLIDEDYYARVEG
Sbjct:  456 QYFGKLMDEVDEEGLDAETAKERKIMRLLLKIKNGTPPQRKTALRQLTDKAREFGAGALFNQILPLLMAPTLEDQERHLLVKV----------------------------------------------------------------IDRVLYKLDDLVRPYVHKILVVIEPLLIDEDYYARVEG 576
[Close]
BLAST of mRNA_H-elongata_contig135757.2524.1 vs. uniprot
Match: H3G976_PHYRM (SF3b1 domain-containing protein n=20 Tax=Peronosporaceae TaxID=4777 RepID=H3G976_PHYRM)

HSP 1 Score: 188 bits (477), Expect = 8.350e-52
Identity = 109/185 (58.92%), Postives = 117/185 (63.24%), Query Frame = 1 
Query:    4 QYFGKLMDEVQEDELNAEEAKERKILRMLLKIKNGTPPQRKTALRQITDKARIFGAGALFNQILPLLMSPTLEDQERHLLVKVEIYSYYSSLLWFSCPFYCCLQLLRVCLSIMVVYLYDLCAVFVAVHSAFPPRRQPCVWSCGHQQVIDRILYKLDDLVRPYVHKILVVIEPLLIDEDYYARVEG 558
            QYFGKLMDEV E++L+ E AKERKI+R+LLKIKNGTPPQRKTALRQ+TDKAR FGAGALFNQILPLLM+PTLEDQERHLLVKV                                                                IDR+LYKLDDLVRPYVHKILVVIEPLLIDEDYYARVEG
Sbjct:  398 QYFGKLMDEVNEEDLDPEAAKERKIMRLLLKIKNGTPPQRKTALRQLTDKAREFGAGALFNQILPLLMAPTLEDQERHLLVKV----------------------------------------------------------------IDRVLYKLDDLVRPYVHKILVVIEPLLIDEDYYARVEG 518
[Close]
BLAST of mRNA_H-elongata_contig135757.2524.1 vs. uniprot
Match: G5A4J4_PHYSP (Uncharacterized protein n=2 Tax=Phytophthora TaxID=4783 RepID=G5A4J4_PHYSP)

HSP 1 Score: 186 bits (473), Expect = 1.530e-51
Identity = 108/185 (58.38%), Postives = 117/185 (63.24%), Query Frame = 1 
Query:    4 QYFGKLMDEVQEDELNAEEAKERKILRMLLKIKNGTPPQRKTALRQITDKARIFGAGALFNQILPLLMSPTLEDQERHLLVKVEIYSYYSSLLWFSCPFYCCLQLLRVCLSIMVVYLYDLCAVFVAVHSAFPPRRQPCVWSCGHQQVIDRILYKLDDLVRPYVHKILVVIEPLLIDEDYYARVEG 558
            QYFGKLMDEV E++L+ E AKERKI+R+LLKIKNGTPPQRK+ALRQ+TDKAR FGAGALFNQILPLLM+PTLEDQERHLLVKV                                                                IDR+LYKLDDLVRPYVHKILVVIEPLLIDEDYYARVEG
Sbjct:   34 QYFGKLMDEVNEEDLDPEAAKERKIMRLLLKIKNGTPPQRKSALRQLTDKAREFGAGALFNQILPLLMAPTLEDQERHLLVKV----------------------------------------------------------------IDRVLYKLDDLVRPYVHKILVVIEPLLIDEDYYARVEG 154
[Close]
BLAST of mRNA_H-elongata_contig135757.2524.1 vs. uniprot
Match: A0A2P4XSF6_9STRA (Splicing factor 3B subunit 1 (Fragment) n=5 Tax=Phytophthora TaxID=4783 RepID=A0A2P4XSF6_9STRA)

HSP 1 Score: 187 bits (474), Expect = 1.770e-51
Identity = 109/185 (58.92%), Postives = 116/185 (62.70%), Query Frame = 1 
Query:    4 QYFGKLMDEVQEDELNAEEAKERKILRMLLKIKNGTPPQRKTALRQITDKARIFGAGALFNQILPLLMSPTLEDQERHLLVKVEIYSYYSSLLWFSCPFYCCLQLLRVCLSIMVVYLYDLCAVFVAVHSAFPPRRQPCVWSCGHQQVIDRILYKLDDLVRPYVHKILVVIEPLLIDEDYYARVEG 558
            QYFGKLMDEV E+EL+ E A ERKI+R+LLKIKNGTPPQRKTALRQ+TDKAR FGAGALFNQILPLLM+PTLEDQERHLLVKV                                                                IDR+LYKLDDLVRPYVHKILVVIEPLLIDEDYYARVEG
Sbjct:  404 QYFGKLMDEVNEEELDPEAAMERKIMRLLLKIKNGTPPQRKTALRQLTDKAREFGAGALFNQILPLLMAPTLEDQERHLLVKV----------------------------------------------------------------IDRVLYKLDDLVRPYVHKILVVIEPLLIDEDYYARVEG 524
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig135757.2524.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A7S2XU55_9STRA1.380e-5758.38Hypothetical protein (Fragment) n=1 Tax=Fibrocapsa... [more]
A0A7S2FXW6_9STRA1.520e-5758.70Hypothetical protein (Fragment) n=1 Tax=Florenciel... [more]
D7FI14_ECTSI2.080e-5562.16SF3b1 domain-containing protein (Fragment) n=1 Tax... [more]
A0A6H5JJ74_9PHAE1.270e-5462.16TOG domain-containing protein n=1 Tax=Ectocarpus s... [more]
A0A2P4X7D7_9STRA4.740e-5358.92Splicing factor 3B subunit 1 (Fragment) n=1 Tax=Ph... [more]
A0A3M7PDF5_BRAPC3.900e-5255.91Splicing factor 3B subunit (Fragment) n=1 Tax=Brac... [more]
A0A662WMW2_9STRA6.180e-5259.46SF3b1 domain-containing protein n=2 Tax=Nothophyto... [more]
H3G976_PHYRM8.350e-5258.92SF3b1 domain-containing protein n=20 Tax=Peronospo... [more]
G5A4J4_PHYSP1.530e-5158.38Uncharacterized protein n=2 Tax=Phytophthora TaxID... [more]
A0A2P4XSF6_9STRA1.770e-5158.92Splicing factor 3B subunit 1 (Fragment) n=5 Tax=Ph... [more]

Pages

back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig135757contigH-elongata_contig135757:529..1152 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score181.8
Seed ortholog evalue2.9e-43
Seed eggNOG ortholog2880.D7FI14
Preferred nameSF3B1
KEGG koko:K12828
KEGG Pathwayko03040,map03040
KEGG ModuleM00352
GOsGO:0000245,GO:0000375,GO:0000377,GO:0000398,GO:0000785,GO:0001701,GO:0001824,GO:0001825,GO:0003002,GO:0003674,GO:0003676,GO:0003682,GO:0003723,GO:0003729,GO:0005488,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005654,GO:0005681,GO:0005684,GO:0005686,GO:0005689,GO:0005694,GO:0006139,GO:0006396,GO:0006397,GO:0006725,GO:0006807,GO:0007275,GO:0007389,GO:0008150,GO:0008152,GO:0008380,GO:0009653,GO:0009790,GO:0009792,GO:0009892,GO:0009893,GO:0009952,GO:0009987,GO:0010467,GO:0010468,GO:0010604,GO:0010605,GO:0010628,GO:0010629,GO:0016043,GO:0016070,GO:0016071,GO:0016363,GO:0016604,GO:0016607,GO:0019222,GO:0022607,GO:0022613,GO:0022618,GO:0030532,GO:0031974,GO:0031981,GO:0032501,GO:0032502,GO:0032991,GO:0034399,GO:0034622,GO:0034641,GO:0034693,GO:0040029,GO:0043009,GO:0043170,GO:0043226,GO:0043227,GO:0043228,GO:0043229,GO:0043231,GO:0043232,GO:0043233,GO:0043933,GO:0044085,GO:0044237,GO:0044238,GO:0044422,GO:0044424,GO:0044427,GO:0044428,GO:0044446,GO:0044451,GO:0044464,GO:0045815,GO:0046483,GO:0048518,GO:0048519,GO:0048646,GO:0048856,GO:0050789,GO:0060255,GO:0065003,GO:0065007,GO:0070013,GO:0071004,GO:0071005,GO:0071010,GO:0071011,GO:0071013,GO:0071014,GO:0071704,GO:0071826,GO:0071840,GO:0090304,GO:0097159,GO:0097525,GO:0120114,GO:1901360,GO:1901363,GO:1902494,GO:1990904
EggNOG free text desc.spliceosomal complex assembly
EggNOG OGsCOG5181@1,KOG0213@2759
COG Functional cat.A
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko00002,ko03036,ko03041
Hectar predicted targeting categoryother localisation
Exons2
Model size564
Cds size543
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig135757.2524.1prot_H-elongata_contig135757.2524.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig135757 550..1152 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929805.9798694-UTR-H-elongata_contig135757:528..5491622929805.9798694-UTR-H-elongata_contig135757:528..549Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig135757 529..549 +
1691679164.5392642-UTR-H-elongata_contig135757:528..5491691679164.5392642-UTR-H-elongata_contig135757:528..549Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig135757 529..549 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929805.998468-CDS-H-elongata_contig135757:549..7811622929805.998468-CDS-H-elongata_contig135757:549..781Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig135757 550..781 +
1691679164.5517335-CDS-H-elongata_contig135757:549..7811691679164.5517335-CDS-H-elongata_contig135757:549..781Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig135757 550..781 +
1622929806.0554824-CDS-H-elongata_contig135757:841..11521622929806.0554824-CDS-H-elongata_contig135757:841..1152Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig135757 842..1152 +
1691679164.5626433-CDS-H-elongata_contig135757:841..11521691679164.5626433-CDS-H-elongata_contig135757:841..1152Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig135757 842..1152 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig135757.2524.1

>prot_H-elongata_contig135757.2524.1 ID=prot_H-elongata_contig135757.2524.1|Name=mRNA_H-elongata_contig135757.2524.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=181bp
MDEVQEDELNAEEAKERKILRMLLKIKNGTPPQRKTALRQITDKARIFGA
GALFNQILPLLMSPTLEDQERHLLVKVEIYSYYSSLLWFSCPFYCCLQLL
RVCLSIMVVYLYDLCAVFVAVHSAFPPRRQPCVWSCGHQQVIDRILYKLD
DLVRPYVHKILVVIEPLLIDEDYYARVEGG*
back to top

mRNA from alignment at H-elongata_contig135757:529..1152+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig135757.2524.1 ID=mRNA_H-elongata_contig135757.2524.1|Name=mRNA_H-elongata_contig135757.2524.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=624bp|location=Sequence derived from alignment at H-elongata_contig135757:529..1152+ (Himanthalia elongata Himel1 dioecious)
GTTCAGTACTTCGGTAAGCTGATGGACGAAGTGCAAGAAGATGAACTAAA
CGCCGAAGAAGCCAAGGAGCGCAAGATCCTCCGCATGCTGCTCAAGATCA
AGAACGGTACGCCCCCCCAGAGAAAGACAGCTCTTCGGCAGATCACCGAC
AAGGCGCGCATATTCGGTGCTGGGGCCCTCTTCAACCAGATCCTGCCTCT
GCTCATGTCCCCCACGCTAGAGGACCAGGAGCGACACCTCCTGGTGAAGG
TAGGTTGTTCTTGATGAGTCTAACCCAACTACTGTATAGATTTGTACTGG
TATCCATAGAGAGAGATCTATAGTTATTACTCTAGTTTATTATGGTTTTC
GTGCCCGTTTTATTGTTGCCTTCAATTGTTGCGTGTGTGCTTATCTATAA
TGGTTGTGTACTTGTATGATTTGTGCGCTGTGTTTGTGGCCGTCCACTCC
GCTTTTCCCCCTCGGCGGCAACCCTGCGTGTGGTCGTGTGGTCATCAACA
GGTAATCGACCGTATTCTGTACAAGCTGGACGATCTCGTACGCCCTTACG
TGCACAAGATCCTCGTGGTGATCGAGCCCCTGCTGATCGATGAGGATTAC
TATGCCAGGGTTGAAGGTGGGTGA
back to top

Coding sequence (CDS) from alignment at H-elongata_contig135757:529..1152+

>mRNA_H-elongata_contig135757.2524.1 ID=mRNA_H-elongata_contig135757.2524.1|Name=mRNA_H-elongata_contig135757.2524.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=1086bp|location=Sequence derived from alignment at H-elongata_contig135757:529..1152+ (Himanthalia elongata Himel1 dioecious)
ATGGACGAAGTGCAAGAAGATGAACTAAACGCCGAAGAAGCCAAGGAGCG
CAAGATCCTCCGCATGCTGCTCAAGATCAAGAACGGTACGCCCCCCCAGA
GAAAGACAGCTCTTCGGCAGATCACCGACAAGGCGCGCATATTCGGTGCT
GGGGCCCTCTTCAACCAGATCCTGCCTCTGCTCATGTCCCCCACGCTAGA
GGACCAGGAGCGACACCTCCTGGTGAAGGTAGATGGACGAAGTGCAAGAA
GATGAACTAAACGCCGAAGAAGCCAAGGAGCGCAAGATCCTCCGCATGCT
GCTCAAGATCAAGAACGGTACGCCCCCCCAGAGAAAGACAGCTCTTCGGC
AGATCACCGACAAGGCGCGCATATTCGGTGCTGGGGCCCTCTTCAACCAG
ATCCTGCCTCTGCTCATGTCCCCCACGCTAGAGGACCAGGAGCGACACCT
CCTGGTGAAGGTAGAGATCTATAGTTATTACTCTAGTTTATTATGGTTTT
CGTGCCCGTTTTATTGTTGCCTTCAATTGTTGCGTGTGTGCTTATCTATA
ATGGTTGTGTACTTGTATGATTTGTGCGCTGTGTTTGTGGCCGTCCACTC
CGCTTTTCCCCCTCGGCGGCAACCCTGCGTGTGGTCGTGTGGTCATCAAC
AGGTAATCGACCGTATTCTGTACAAGCTGGACGATCTCGTACGCCCTTAC
GTGCACAAGATCCTCGTGGTGATCGAGCCCCTGCTGATCGATGAGGATTA
CTATGCCAGGGTTGAAGGTGGGTGAAGATCTATAGTTATTACTCTAGTTT
ATTATGGTTTTCGTGCCCGTTTTATTGTTGCCTTCAATTGTTGCGTGTGT
GCTTATCTATAATGGTTGTGTACTTGTATGATTTGTGCGCTGTGTTTGTG
GCCGTCCACTCCGCTTTTCCCCCTCGGCGGCAACCCTGCGTGTGGTCGTG
TGGTCATCAACAGGTAATCGACCGTATTCTGTACAAGCTGGACGATCTCG
TACGCCCTTACGTGCACAAGATCCTCGTGGTGATCGAGCCCCTGCTGATC
GATGAGGATTACTATGCCAGGGTTGAAGGTGGGTGA
back to top