mRNA_H-elongata_contig135561.2518.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig135561.2518.1
Unique NamemRNA_H-elongata_contig135561.2518.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
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BLAST of mRNA_H-elongata_contig135561.2518.1 vs. uniprot
Match: A0A6H5K735_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K735_9PHAE)

HSP 1 Score: 78.2 bits (191), Expect = 1.840e-15
Identity = 32/57 (56.14%), Postives = 41/57 (71.93%), Query Frame = 1 
Query:    1 LAACDSGGWMLRAKDGSYPIFVVFDCAGHPADVTSQDWFAINCRDCSTESVDGAFTV 171
            LAACDSGGW+LR  DG YP ++VFDCA HP D++S  W+ I  R  S E++D +F V
Sbjct:  126 LAACDSGGWILRESDGGYPAYMVFDCAYHPVDISSGVWYRIPSRGDSAETMDASFAV 182
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BLAST of mRNA_H-elongata_contig135561.2518.1 vs. uniprot
Match: D7FXK4_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FXK4_ECTSI)

HSP 1 Score: 77.8 bits (190), Expect = 2.520e-15
Identity = 31/57 (54.39%), Postives = 40/57 (70.18%), Query Frame = 1 
Query:    1 LAACDSGGWMLRAKDGSYPIFVVFDCAGHPADVTSQDWFAINCRDCSTESVDGAFTV 171
            LAACDSGGW+LR  DG YP ++VFDCA HP D++S  W+ I  R  S E++D +F  
Sbjct:  124 LAACDSGGWILRESDGGYPAYMVFDCASHPVDISSGVWYKIPSRGDSAETMDASFAA 180
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig135561.2518.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
A0A6H5K735_9PHAE1.840e-1556.14Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D7FXK4_ECTSI2.520e-1554.39Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig135561contigH-elongata_contig135561:228..1768 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryno signal peptide or anchor
Ec32 ortholog descriptionexpressed unknown protein
Ec32 orthologEc-28_002040.1
Exons2
Model size189
Cds size162
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig135561.2518.1prot_H-elongata_contig135561.2518.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig135561 228..1741 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929805.4203405-CDS-H-elongata_contig135561:227..3501622929805.4203405-CDS-H-elongata_contig135561:227..350Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig135561 228..350 -
1691679164.3210993-CDS-H-elongata_contig135561:227..3501691679164.3210993-CDS-H-elongata_contig135561:227..350Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig135561 228..350 -
1622929805.4377503-CDS-H-elongata_contig135561:1702..17411622929805.4377503-CDS-H-elongata_contig135561:1702..1741Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig135561 1703..1741 -
1691679164.330238-CDS-H-elongata_contig135561:1702..17411691679164.330238-CDS-H-elongata_contig135561:1702..1741Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig135561 1703..1741 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929805.4572802-UTR-H-elongata_contig135561:1741..17681622929805.4572802-UTR-H-elongata_contig135561:1741..1768Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig135561 1742..1768 -
1691679164.3410232-UTR-H-elongata_contig135561:1741..17681691679164.3410232-UTR-H-elongata_contig135561:1741..1768Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig135561 1742..1768 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig135561.2518.1

>prot_H-elongata_contig135561.2518.1 ID=prot_H-elongata_contig135561.2518.1|Name=mRNA_H-elongata_contig135561.2518.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=54bp
MLRAKDGSYPIFVVFDCAGHPADVTSQDWFAINCRDCSTESVDGAFTVGK
PLY*
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mRNA from alignment at H-elongata_contig135561:228..1768-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig135561.2518.1 ID=mRNA_H-elongata_contig135561.2518.1|Name=mRNA_H-elongata_contig135561.2518.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=1541bp|location=Sequence derived from alignment at H-elongata_contig135561:228..1768- (Himanthalia elongata Himel1 dioecious)
CTGGCGGCGTGCGACAGCGGGGGATGGATGCTTCGGGCCAAAGACGGGAG
CTATCCCATTTTCGTGGTGAGGTTGGGAAGCTTTTTATCTCCGGCATTTG
TAGCTATTATCTTGAATTCAGTATGTAAGTGGTGTTGTGTTTGTGTGTGG
GTATGGGTGTGAACCGCTGTTTGTTGTTGTTTCTAACTTTGAGAAGCAAA
GTGATAGCTTTGCCAGCCTGAGTTATTCGTGATAGCCAATCAAAATCCTG
CGTGCTCCTGGTATTTCCATCAAAACAGGCGTATAATATTTTGCAGACTA
GGGGGATAGGGGGAAAATTATTTTTCCTGTTCAGCTGACCACAAGCAGAA
GGCAACCAAATCCGGTTGTTCCTTTTGCGAAAAGTGCGACCACCACCACC
AACAACAACAACACCTACTATTTATATTCTACCGTACGAAATATCAGCGT
GTCTACAAAAAATAATAACAAAAATCTGATTAGAAAAATATTTTGGAATC
GAATCGAATCGAATCGAATTACGGTAAGCCTATTATTAGTATTAGTAGTG
TATTAAACATTGAACATTAAAGTCTACGACAGCGCGATATGTGGATAAAA
TAAGAAAACAATATGTGGATAAAATAAAATAAAATGAAATAAAATATATC
CAAGGGGGCGCTAGGTATCAATAGGTCAAAATGGATTGTTCCTACGTTGA
GGTAAACTGGAGAGTGTTTTATAGATGTATGGTTGTATGTTGTTGTTAGC
CTCTTAGGTTTCACGGGAGAGATAGACTCGCTGGCTGGGAATCGGGTTGC
TGAAGGGTGCAAGCATGTAGAGATACTATAATACACAGTATCTACAGCGT
ATATGTATATATATATATATACACTACAGTATAGGCAAAAATAATGCGGC
GAAAATAGTGTAACGGTCGTGTAACGGTCTCCCACCCACAGCTCGGTTTA
GAGTTAGATTTGTTGTCTTTGTCGTTATTGTTATTGTTAAATATTTATTT
ATTTATTTATACTTAATGTTTTTGTTTTTTGGGGGGGTTTTCGTTGGGGG
TGTGGAAAACGTAGTTGAGATTGGCTAAAAAAAACTATTAACTTTAAAGG
GCGGGGGCGCACATCGGCAGAAAATGAGAGTCCAGTTTACTTTGCTGTCT
AGGATGGGGATACTCCACGCCGACCAATGACCTACCGGCGACAAAGACAG
TGACCCTTTTTGCCTATCCGGATCGCCGGATTTGCCTACCCATCCCACGC
CCAGATGCTTTCTCCGTTTGTTTTTTTTCTCGACCGACCGAAGGCCGCTG
GCGTTTTAATTGTTTTTGTCTTTTTTTTTCTTTTCCCCCGTTTTAATTCC
CGCCAATGGACCGCCACACAACAATTGTTTTTTTCGTTCTAATTCGGGGC
CGGGGGGGGGGCAAAAAGGTTTTCGACTGTGCCGGCCATCCTGCGGACGT
GACCAGCCAAGATTGGTTCGCGATCAACTGTCGTGACTGCAGTACTGAAT
CGGTTGATGGGGCGTTCACGGTCGGTAAGCCTCTCTATTAA
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Coding sequence (CDS) from alignment at H-elongata_contig135561:228..1768-

>mRNA_H-elongata_contig135561.2518.1 ID=mRNA_H-elongata_contig135561.2518.1|Name=mRNA_H-elongata_contig135561.2518.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=324bp|location=Sequence derived from alignment at H-elongata_contig135561:228..1768- (Himanthalia elongata Himel1 dioecious)
ATGCTTCGGGCCAAAGACGGGAGCTATCCCATTTTCGTGATGCTTCGGGC
CAAAGACGGGAGCTATCCCATTTTCGTGGTTTTCGACTGTGCCGGCCATC
CTGCGGACGTGACCAGCCAAGATTGGTTCGCGATCAACTGTCGTGACTGC
AGTACTGAATCGGTTGATGGGGCGTTCACGGTCGGTAAGCCTCTCTATTA
AGTTTTCGACTGTGCCGGCCATCCTGCGGACGTGACCAGCCAAGATTGGT
TCGCGATCAACTGTCGTGACTGCAGTACTGAATCGGTTGATGGGGCGTTC
ACGGTCGGTAAGCCTCTCTATTAA
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