mRNA_H-elongata_contig102973.252.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig102973.252.1
Unique NamemRNA_H-elongata_contig102973.252.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
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BLAST of mRNA_H-elongata_contig102973.252.1 vs. uniprot
Match: D7G732_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G732_ECTSI)

HSP 1 Score: 110 bits (275), Expect = 1.550e-26
Identity = 48/73 (65.75%), Postives = 61/73 (83.56%), Query Frame = 1 
Query:    1 PGARSYHAAASLVSDGQDSVSCVYVFGGRDYENSILFSDLWRLCPVSGFLGSAENTTFRWTELSPSGDLPLGR 219
            P +RSYHA ASL S+G    +C+Y++GGR+YE SIL+SDLW LCPVS +LG++E+TTF WTELSP+G LPLGR
Sbjct:  280 PASRSYHAVASLASNGLGGSACLYMYGGRNYEMSILYSDLWSLCPVSNYLGNSEDTTFTWTELSPAGTLPLGR 352
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig102973.252.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
D7G732_ECTSI1.550e-2665.75Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig102973contigH-elongata_contig102973:1316..1537 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score113.6
Seed ortholog evalue3.9e-23
Seed eggNOG ortholog2880.D7G732
EggNOG free text desc.calcium ion binding
EggNOG OGsKOG1217@1,KOG1217@2759
Ec32 ortholog descriptionKelch-type beta propeller
Ec32 orthologEc-01_011220.1
COG Functional cat.O
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Hectar predicted targeting categoryother localisation
Exons1
Model size222
Cds size222
Stop1
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929565.9679751-CDS-H-elongata_contig102973:1315..15371622929565.9679751-CDS-H-elongata_contig102973:1315..1537Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig102973 1316..1537 -
1691679072.981168-CDS-H-elongata_contig102973:1315..15371691679072.981168-CDS-H-elongata_contig102973:1315..1537Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig102973 1316..1537 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig102973.252.1prot_H-elongata_contig102973.252.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig102973 1316..1537 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig102973.252.1

>prot_H-elongata_contig102973.252.1 ID=prot_H-elongata_contig102973.252.1|Name=mRNA_H-elongata_contig102973.252.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=74bp
PGARSYHAAASLVSDGQDSVSCVYVFGGRDYENSILFSDLWRLCPVSGFL
GSAENTTFRWTELSPSGDLPLGR*
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mRNA from alignment at H-elongata_contig102973:1316..1537-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig102973.252.1 ID=mRNA_H-elongata_contig102973.252.1|Name=mRNA_H-elongata_contig102973.252.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=222bp|location=Sequence derived from alignment at H-elongata_contig102973:1316..1537- (Himanthalia elongata Himel1 dioecious)
CCGGGTGCTCGTTCGTACCACGCGGCTGCCTCGCTCGTTTCGGATGGTCA
AGACAGCGTTTCATGCGTGTACGTCTTCGGGGGAAGGGATTACGAGAACA
GCATCCTCTTCTCGGACCTATGGAGACTGTGCCCGGTGTCCGGCTTTCTC
GGGAGCGCTGAGAATACCACCTTTCGATGGACTGAGTTATCGCCATCGGG
GGATTTGCCTTTGGGGAGGTGA
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Coding sequence (CDS) from alignment at H-elongata_contig102973:1316..1537-

>mRNA_H-elongata_contig102973.252.1 ID=mRNA_H-elongata_contig102973.252.1|Name=mRNA_H-elongata_contig102973.252.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=444bp|location=Sequence derived from alignment at H-elongata_contig102973:1316..1537- (Himanthalia elongata Himel1 dioecious)
CCGGGTGCTCGTTCGTACCACGCGGCTGCCTCGCTCGTTTCGGATGGTCA
AGACAGCGTTTCATGCGTGTACGTCTTCGGGGGAAGGGATTACGAGAACA
GCATCCTCTTCTCGGACCTATGGAGACTGTGCCCGGTGTCCGGCTTTCTC
GGGAGCGCTGAGAATACCACCTTTCGATGGACTGAGTTATCGCCATCGGG
GGATTTGCCTTTGGGGAGGTGACCGGGTGCTCGTTCGTACCACGCGGCTG
CCTCGCTCGTTTCGGATGGTCAAGACAGCGTTTCATGCGTGTACGTCTTC
GGGGGAAGGGATTACGAGAACAGCATCCTCTTCTCGGACCTATGGAGACT
GTGCCCGGTGTCCGGCTTTCTCGGGAGCGCTGAGAATACCACCTTTCGAT
GGACTGAGTTATCGCCATCGGGGGATTTGCCTTTGGGGAGGTGA
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