prot_H-elongata_contig102973.252.1 (polypeptide) Himanthalia elongata Himel1 dioecious

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_H-elongata_contig102973.252.1
Unique Nameprot_H-elongata_contig102973.252.1
Typepolypeptide
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Sequence length74
Homology
[Close]
BLAST of mRNA_H-elongata_contig102973.252.1 vs. uniprot
Match: D7G732_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G732_ECTSI)

HSP 1 Score: 110 bits (275), Expect = 1.550e-26
Identity = 48/73 (65.75%), Postives = 61/73 (83.56%), Query Frame = 0 
Query:    1 PGARSYHAAASLVSDGQDSVSCVYVFGGRDYENSILFSDLWRLCPVSGFLGSAENTTFRWTELSPSGDLPLGR 73
            P +RSYHA ASL S+G    +C+Y++GGR+YE SIL+SDLW LCPVS +LG++E+TTF WTELSP+G LPLGR
Sbjct:  280 PASRSYHAVASLASNGLGGSACLYMYGGRNYEMSILYSDLWSLCPVSNYLGNSEDTTFTWTELSPAGTLPLGR 352
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig102973.252.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
D7G732_ECTSI1.550e-2665.75Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
back to top
InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availablePFAMPF13854Kelch_5coord: 1..45
e-value: 7.2E-8
score: 32.2
IPR015915Kelch-type beta propellerSUPERFAMILY117281Kelch motifcoord: 1..71

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig102973contigH-elongata_contig102973:1316..1537 -
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-09-29
Diamond blastp: OGS1.0 vs UniRef902022-09-16
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig102973.252.1mRNA_H-elongata_contig102973.252.1Himanthalia elongata Himel1 dioeciousmRNAH-elongata_contig102973 1316..1537 -


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_H-elongata_contig102973.252.1 ID=prot_H-elongata_contig102973.252.1|Name=mRNA_H-elongata_contig102973.252.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=74bp
PGARSYHAAASLVSDGQDSVSCVYVFGGRDYENSILFSDLWRLCPVSGFL
GSAENTTFRWTELSPSGDLPLGR*
back to top
Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR015915Kelch-typ_b-propeller