mRNA_H-elongata_contig135476.2508.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig135476.2508.1
Unique NamemRNA_H-elongata_contig135476.2508.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
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BLAST of mRNA_H-elongata_contig135476.2508.1 vs. uniprot
Match: E9GF95_DAPPU (Helicase ATP-binding domain-containing protein n=1 Tax=Daphnia pulex TaxID=6669 RepID=E9GF95_DAPPU)

HSP 1 Score: 91.7 bits (226), Expect = 7.690e-23
Identity = 45/58 (77.59%), Postives = 53/58 (91.38%), Query Frame = 1 
Query:    1 HHQRGECVFVAAHTSAGKTVVAEYAIAMAQQHMTRAIYTSPIKALSNQKYRDFKVGKT 174
            H ++GE VF+AAHTSAGKTVVAEYAIA++++HMTRAIYTSPIKALSNQK+RDFK   T
Sbjct:   23 HLEKGEDVFIAAHTSAGKTVVAEYAIALSKKHMTRAIYTSPIKALSNQKFRDFKTTFT 80
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BLAST of mRNA_H-elongata_contig135476.2508.1 vs. uniprot
Match: A0A6H5KP96_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KP96_9PHAE)

HSP 1 Score: 99.0 bits (245), Expect = 9.190e-23
Identity = 49/53 (92.45%), Postives = 51/53 (96.23%), Query Frame = 1 
Query:    7 QRGECVFVAAHTSAGKTVVAEYAIAMAQQHMTRAIYTSPIKALSNQKYRDFKV 165
            +R ECVFV+AHTSAGKTVVAEYAIAMAQQHMTRAIYTSPIKALSNQKYRDFK 
Sbjct:  450 ERAECVFVSAHTSAGKTVVAEYAIAMAQQHMTRAIYTSPIKALSNQKYRDFKT 502
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BLAST of mRNA_H-elongata_contig135476.2508.1 vs. uniprot
Match: D7FJL2_ECTSI (DEAD box helicase n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FJL2_ECTSI)

HSP 1 Score: 99.0 bits (245), Expect = 9.200e-23
Identity = 49/53 (92.45%), Postives = 51/53 (96.23%), Query Frame = 1 
Query:    7 QRGECVFVAAHTSAGKTVVAEYAIAMAQQHMTRAIYTSPIKALSNQKYRDFKV 165
            +R ECVFV+AHTSAGKTVVAEYAIAMAQQHMTRAIYTSPIKALSNQKYRDFK 
Sbjct:  605 ERAECVFVSAHTSAGKTVVAEYAIAMAQQHMTRAIYTSPIKALSNQKYRDFKT 657
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BLAST of mRNA_H-elongata_contig135476.2508.1 vs. uniprot
Match: E9H4C0_DAPPU (Helicase ATP-binding domain-containing protein (Fragment) n=2 Tax=Daphnia pulex TaxID=6669 RepID=E9H4C0_DAPPU)

HSP 1 Score: 92.8 bits (229), Expect = 1.500e-22
Identity = 45/55 (81.82%), Postives = 52/55 (94.55%), Query Frame = 1 
Query:    1 HHQRGECVFVAAHTSAGKTVVAEYAIAMAQQHMTRAIYTSPIKALSNQKYRDFKV 165
            H ++GE VF+AAHTSAGKTVVAEYAIA++Q+HMTRAIYTSPIKALSNQK+RDFK 
Sbjct:    4 HLEKGEDVFIAAHTSAGKTVVAEYAIALSQKHMTRAIYTSPIKALSNQKFRDFKT 58
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BLAST of mRNA_H-elongata_contig135476.2508.1 vs. uniprot
Match: A0A0P1AI70_PLAHL (Dead deah box rna n=1 Tax=Plasmopara halstedii TaxID=4781 RepID=A0A0P1AI70_PLAHL)

HSP 1 Score: 97.1 bits (240), Expect = 4.360e-22
Identity = 47/55 (85.45%), Postives = 52/55 (94.55%), Query Frame = 1 
Query:    1 HHQRGECVFVAAHTSAGKTVVAEYAIAMAQQHMTRAIYTSPIKALSNQKYRDFKV 165
            H +R ECVFVAAHTSAGKTVVAEYAIAM+Q+HMTR IYTSPIKALSNQKYRDF++
Sbjct:  454 HLERHECVFVAAHTSAGKTVVAEYAIAMSQKHMTRTIYTSPIKALSNQKYRDFRI 508
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BLAST of mRNA_H-elongata_contig135476.2508.1 vs. uniprot
Match: A0A835YZN6_9STRA (P-loop containing nucleoside triphosphate hydrolase protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YZN6_9STRA)

HSP 1 Score: 93.2 bits (230), Expect = 5.830e-22
Identity = 47/52 (90.38%), Postives = 49/52 (94.23%), Query Frame = 1 
Query:    7 QRGECVFVAAHTSAGKTVVAEYAIAMAQQHMTRAIYTSPIKALSNQKYRDFK 162
            +R ECVFVAAHTSAGKTVVAEYAIA+A  HMTRAIYTSPIKALSNQKYRDFK
Sbjct:   54 ERRECVFVAAHTSAGKTVVAEYAIALAAAHMTRAIYTSPIKALSNQKYRDFK 105
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BLAST of mRNA_H-elongata_contig135476.2508.1 vs. uniprot
Match: H3GLZ7_PHYRM (Uncharacterized protein n=11 Tax=Phytophthora TaxID=4783 RepID=H3GLZ7_PHYRM)

HSP 1 Score: 95.9 bits (237), Expect = 1.110e-21
Identity = 47/55 (85.45%), Postives = 51/55 (92.73%), Query Frame = 1 
Query:    1 HHQRGECVFVAAHTSAGKTVVAEYAIAMAQQHMTRAIYTSPIKALSNQKYRDFKV 165
            H +R ECVFVAAHTSAGKTVVAEYAIAM+Q+HMTR IYTSPIKALSNQKYRDF+ 
Sbjct:  354 HLERHECVFVAAHTSAGKTVVAEYAIAMSQKHMTRTIYTSPIKALSNQKYRDFRT 408
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BLAST of mRNA_H-elongata_contig135476.2508.1 vs. uniprot
Match: K3WVU5_GLOUD (Uncharacterized protein n=1 Tax=Globisporangium ultimum (strain ATCC 200006 / CBS 805.95 / DAOM BR144) TaxID=431595 RepID=K3WVU5_GLOUD)

HSP 1 Score: 95.9 bits (237), Expect = 1.110e-21
Identity = 47/55 (85.45%), Postives = 51/55 (92.73%), Query Frame = 1 
Query:    1 HHQRGECVFVAAHTSAGKTVVAEYAIAMAQQHMTRAIYTSPIKALSNQKYRDFKV 165
            H +R ECVFVAAHTSAGKTVVAEYAIAM+Q+HMTR IYTSPIKALSNQKYRDF+ 
Sbjct:  446 HLERHECVFVAAHTSAGKTVVAEYAIAMSQKHMTRTIYTSPIKALSNQKYRDFRT 500
[Close]
BLAST of mRNA_H-elongata_contig135476.2508.1 vs. uniprot
Match: A0A2P4XV81_9STRA (DEAD/DEAH box RNA helicase (Fragment) n=2 Tax=Phytophthora palmivora var. palmivora TaxID=611791 RepID=A0A2P4XV81_9STRA)

HSP 1 Score: 95.5 bits (236), Expect = 1.520e-21
Identity = 46/55 (83.64%), Postives = 51/55 (92.73%), Query Frame = 1 
Query:    1 HHQRGECVFVAAHTSAGKTVVAEYAIAMAQQHMTRAIYTSPIKALSNQKYRDFKV 165
            H +R ECVFVAAHTSAGKTV+AEYAIAM+Q+HMTR IYTSPIKALSNQKYRDF+ 
Sbjct:  457 HLERHECVFVAAHTSAGKTVIAEYAIAMSQKHMTRTIYTSPIKALSNQKYRDFRT 511
[Close]
BLAST of mRNA_H-elongata_contig135476.2508.1 vs. uniprot
Match: A0A225WSS8_9STRA (DEAD/DEAH box RNA helicase n=1 Tax=Phytophthora megakarya TaxID=4795 RepID=A0A225WSS8_9STRA)

HSP 1 Score: 95.5 bits (236), Expect = 1.520e-21
Identity = 46/55 (83.64%), Postives = 51/55 (92.73%), Query Frame = 1 
Query:    1 HHQRGECVFVAAHTSAGKTVVAEYAIAMAQQHMTRAIYTSPIKALSNQKYRDFKV 165
            H +R ECVFVAAHTSAGKTV+AEYAIAM+Q+HMTR IYTSPIKALSNQKYRDF+ 
Sbjct:  423 HLERHECVFVAAHTSAGKTVIAEYAIAMSQKHMTRTIYTSPIKALSNQKYRDFRT 477
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig135476.2508.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
E9GF95_DAPPU7.690e-2377.59Helicase ATP-binding domain-containing protein n=1... [more]
A0A6H5KP96_9PHAE9.190e-2392.45Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D7FJL2_ECTSI9.200e-2392.45DEAD box helicase n=1 Tax=Ectocarpus siliculosus T... [more]
E9H4C0_DAPPU1.500e-2281.82Helicase ATP-binding domain-containing protein (Fr... [more]
A0A0P1AI70_PLAHL4.360e-2285.45Dead deah box rna n=1 Tax=Plasmopara halstedii Tax... [more]
A0A835YZN6_9STRA5.830e-2290.38P-loop containing nucleoside triphosphate hydrolas... [more]
H3GLZ7_PHYRM1.110e-2185.45Uncharacterized protein n=11 Tax=Phytophthora TaxI... [more]
K3WVU5_GLOUD1.110e-2185.45Uncharacterized protein n=1 Tax=Globisporangium ul... [more]
A0A2P4XV81_9STRA1.520e-2183.64DEAD/DEAH box RNA helicase (Fragment) n=2 Tax=Phyt... [more]
A0A225WSS8_9STRA1.520e-2183.64DEAD/DEAH box RNA helicase n=1 Tax=Phytophthora me... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig135476contigH-elongata_contig135476:1086..1262 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score99.0
Seed ortholog evalue7.9e-19
Seed eggNOG ortholog2880.D7FJL2
Preferred nameSKIV2L
KEGG koko:K12599
KEGG Pathwayko03018,map03018
KEGG ModuleM00392
GOsGO:0000184,GO:0000288,GO:0000291,GO:0000956,GO:0003674,GO:0003676,GO:0003723,GO:0003724,GO:0003729,GO:0003824,GO:0004004,GO:0004386,GO:0005488,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005730,GO:0005737,GO:0005773,GO:0005829,GO:0006139,GO:0006401,GO:0006402,GO:0006725,GO:0006807,GO:0006810,GO:0006811,GO:0006812,GO:0006813,GO:0006950,GO:0006986,GO:0007154,GO:0007165,GO:0008026,GO:0008150,GO:0008152,GO:0008186,GO:0009056,GO:0009057,GO:0009892,GO:0009987,GO:0010033,GO:0010035,GO:0010038,GO:0010468,GO:0010605,GO:0010608,GO:0010629,GO:0015672,GO:0016070,GO:0016071,GO:0016441,GO:0016458,GO:0016462,GO:0016787,GO:0016817,GO:0016818,GO:0016887,GO:0017111,GO:0019222,GO:0019439,GO:0023052,GO:0030001,GO:0030968,GO:0031974,GO:0031981,GO:0032991,GO:0033554,GO:0034427,GO:0034620,GO:0034641,GO:0034655,GO:0034976,GO:0035864,GO:0035966,GO:0035967,GO:0040029,GO:0042221,GO:0042623,GO:0043170,GO:0043226,GO:0043227,GO:0043228,GO:0043229,GO:0043231,GO:0043232,GO:0043233,GO:0043928,GO:0044237,GO:0044238,GO:0044248,GO:0044260,GO:0044265,GO:0044270,GO:0044422,GO:0044424,GO:0044428,GO:0044444,GO:0044446,GO:0044464,GO:0046483,GO:0046700,GO:0048519,GO:0050789,GO:0050794,GO:0050896,GO:0051179,GO:0051234,GO:0051716,GO:0055087,GO:0060255,GO:0065007,GO:0070013,GO:0070035,GO:0070478,GO:0070481,GO:0070887,GO:0071310,GO:0071704,GO:0090304,GO:0097159,GO:0140098,GO:1901360,GO:1901361,GO:1901363,GO:1901575
EggNOG free text desc.nuclear-transcribed mRNA catabolic process, 3'-5' exonucleolytic nonsense-mediated decay
EggNOG OGsCOG4581@1,KOG0947@2759
COG Functional cat.L
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko00002,ko01000,ko03019
Hectar predicted targeting categoryno signal peptide or anchor
Exons1
Model size177
Cds size177
Stop1
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929804.4886935-CDS-H-elongata_contig135476:1085..12621622929804.4886935-CDS-H-elongata_contig135476:1085..1262Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig135476 1086..1262 +
1691679163.9871755-CDS-H-elongata_contig135476:1085..12621691679163.9871755-CDS-H-elongata_contig135476:1085..1262Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig135476 1086..1262 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig135476.2508.1prot_H-elongata_contig135476.2508.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig135476 1086..1262 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig135476.2508.1

>prot_H-elongata_contig135476.2508.1 ID=prot_H-elongata_contig135476.2508.1|Name=mRNA_H-elongata_contig135476.2508.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=59bp
HHQRGECVFVAAHTSAGKTVVAEYAIAMAQQHMTRAIYTSPIKALSNQKY
RDFKVGKT*
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mRNA from alignment at H-elongata_contig135476:1086..1262+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig135476.2508.1 ID=mRNA_H-elongata_contig135476.2508.1|Name=mRNA_H-elongata_contig135476.2508.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=177bp|location=Sequence derived from alignment at H-elongata_contig135476:1086..1262+ (Himanthalia elongata Himel1 dioecious)
CATCATCAGCGAGGGGAGTGTGTCTTTGTAGCCGCGCACACCTCTGCCGG
TAAGACTGTGGTGGCGGAGTACGCGATTGCCATGGCACAGCAACACATGA
CCCGCGCTATCTACACCAGTCCCATTAAGGCCCTTTCGAATCAAAAGTAC
AGGGACTTCAAGGTGGGAAAGACATAA
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Coding sequence (CDS) from alignment at H-elongata_contig135476:1086..1262+

>mRNA_H-elongata_contig135476.2508.1 ID=mRNA_H-elongata_contig135476.2508.1|Name=mRNA_H-elongata_contig135476.2508.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=354bp|location=Sequence derived from alignment at H-elongata_contig135476:1086..1262+ (Himanthalia elongata Himel1 dioecious)
CATCATCAGCGAGGGGAGTGTGTCTTTGTAGCCGCGCACACCTCTGCCGG
TAAGACTGTGGTGGCGGAGTACGCGATTGCCATGGCACAGCAACACATGA
CCCGCGCTATCTACACCAGTCCCATTAAGGCCCTTTCGAATCAAAAGTAC
AGGGACTTCAAGGTGGGAAAGACATAACATCATCAGCGAGGGGAGTGTGT
CTTTGTAGCCGCGCACACCTCTGCCGGTAAGACTGTGGTGGCGGAGTACG
CGATTGCCATGGCACAGCAACACATGACCCGCGCTATCTACACCAGTCCC
ATTAAGGCCCTTTCGAATCAAAAGTACAGGGACTTCAAGGTGGGAAAGAC
ATAA
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