mRNA_H-elongata_contig135460.2507.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig135460.2507.1
Unique NamemRNA_H-elongata_contig135460.2507.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
BLAST of mRNA_H-elongata_contig135460.2507.1 vs. uniprot
Match: A0A401GN13_9APHY (Uncharacterized protein n=1 Tax=Sparassis crispa TaxID=139825 RepID=A0A401GN13_9APHY)

HSP 1 Score: 119 bits (299), Expect = 2.590e-28
Identity = 58/132 (43.94%), Postives = 84/132 (63.64%), Query Frame = 1
Query:   34 EPTNMGEAQTSSRWPQWNRAIAREMDGQISRGVWQVVERPKGKTVLGTRVVFKRKLDKDGRIEKYKCRLVAKGFRQVKGIHYEESSSPTPAQASIRIVLGMIATLGWEARQLDFDMAYLEAEVEEEIYVEPP 429
            +P ++ EA  S+ WP+W  AIA+EM    S G + +VE PK   ++G++ VF+ K + +G IE YK RLVA+GF QV GI + E+ +P    ASIR++L + A   WE  Q+D   AYL  ++EEEIY+  P
Sbjct:  921 DPASLNEAMQSTEWPKWKEAIAKEMQNLDSHGTYTLVEPPKNTNIVGSKFVFRIKHNAEGEIESYKARLVAQGFTQVPGIDFNETFAPVAKLASIRLILALAARYDWELHQMDVKGAYLNGDLEEEIYMRQP 1052          
BLAST of mRNA_H-elongata_contig135460.2507.1 vs. uniprot
Match: A0A5N6PKD3_9ASTR (Integrase catalytic domain-containing protein n=1 Tax=Mikania micrantha TaxID=192012 RepID=A0A5N6PKD3_9ASTR)

HSP 1 Score: 119 bits (298), Expect = 3.280e-28
Identity = 63/141 (44.68%), Postives = 86/141 (60.99%), Query Frame = 1
Query:   16 TRRLDPEPTNMGEAQTSSRWPQWNRAIAREMDGQISRGVWQVVERPKGKTVLGTRVVFKRKLDKDGRIEKYKCRLVAKGFRQVKGIHYEESSSPTPAQASIRIVLGMIATLGWEARQLDFDMAYLEAEVEEEIYVEPPEAY 438
            T  ++ EP    EA TSS  PQW  AI  E+D  +   +W++V+ P G   LG R +FKRK+  DG I+KYK RLV KGFRQ +G+ Y ++ SP     SIR+VL + A    E  Q+D   A+L  ++EEEIY+E PE +
Sbjct:  285 TYMVEGEPQTYREAVTSSEGPQWKEAIKNEIDSILQNHIWELVDLPPGCKPLGYRWIFKRKMKADGSIDKYKARLVIKGFRQKEGLDYFDTYSPVTRITSIRLVLAIAALRNLEVHQMDVKTAFLNGDLEEEIYMEQPEGF 425          
BLAST of mRNA_H-elongata_contig135460.2507.1 vs. uniprot
Match: J4VU23_BEAB2 (Retrotransposon protein, putative, Ty1-copia subclass n=1 Tax=Beauveria bassiana (strain ARSEF 2860) TaxID=655819 RepID=J4VU23_BEAB2)

HSP 1 Score: 117 bits (292), Expect = 4.470e-28
Identity = 61/152 (40.13%), Postives = 88/152 (57.89%), Query Frame = 1
Query:   25 LDPEPTNMGEAQTSSRWPQWNRAIAREMDGQISRGVWQVVERPKGKTVLGTRVVFKRKLDKDGRIEKYKCRLVAKGFRQVKGIHYEESSSPTPAQASIRIVLGMIATLGWEARQLDFDMAYLEAEVEEEIYVEPPEAYRDSRKQVGLLKKAM 480
            L PEP N   A  S+   QW +A+  E +  I    W VV+RP  + VL  R VFKRKL  DG + ++K R V +GF Q+ G+ ++E+ +     AS RI+  + A  GW+  Q+D   A+L   +E EI+VEPPE Y ++R QV  L K++
Sbjct:  112 LGPEPNNRKSALASAEREQWEQAMQEEYNSLIENQTWTVVKRPADRKVLTGRWVFKRKLGSDGEVARHKARFVVRGFSQIYGLDFDETYASVVKSASYRILFALQARYGWKCHQMDIKTAFLNGNLEHEIFVEPPEGYPEARNQVLKLCKSL 263          
BLAST of mRNA_H-elongata_contig135460.2507.1 vs. uniprot
Match: A0A5N6P275_9ASTR (Integrase catalytic domain-containing protein n=1 Tax=Mikania micrantha TaxID=192012 RepID=A0A5N6P275_9ASTR)

HSP 1 Score: 117 bits (294), Expect = 4.950e-28
Identity = 62/135 (45.93%), Postives = 82/135 (60.74%), Query Frame = 1
Query:   34 EPTNMGEAQTSSRWPQWNRAIAREMDGQISRGVWQVVERPKGKTVLGTRVVFKRKLDKDGRIEKYKCRLVAKGFRQVKGIHYEESSSPTPAQASIRIVLGMIATLGWEARQLDFDMAYLEAEVEEEIYVEPPEAY 438
            EP    +A TSS  PQW  AI  E+D  +    W++V+ P G   LG R +FKRK+  DG I+KYK RLV KGFRQ +G+ Y +S SP     SIR+VL + A    E  Q+D   A+L  ++EEEIY+E PE +
Sbjct:  284 EPQTYRDAVTSSEGPQWKEAIKNEIDSILQNHTWELVDLPPGCKPLGYRWIFKRKMKADGSIDKYKARLVIKGFRQKEGVDYFDSYSPVTRITSIRLVLAIAALRNLEVHQMDVKTAFLNGDLEEEIYMEQPEGF 418          
BLAST of mRNA_H-elongata_contig135460.2507.1 vs. uniprot
Match: A0A5N6NFL8_9ASTR (Reverse transcriptase Ty1/copia-type domain-containing protein n=1 Tax=Mikania micrantha TaxID=192012 RepID=A0A5N6NFL8_9ASTR)

HSP 1 Score: 118 bits (295), Expect = 5.240e-28
Identity = 63/141 (44.68%), Postives = 85/141 (60.28%), Query Frame = 1
Query:   16 TRRLDPEPTNMGEAQTSSRWPQWNRAIAREMDGQISRGVWQVVERPKGKTVLGTRVVFKRKLDKDGRIEKYKCRLVAKGFRQVKGIHYEESSSPTPAQASIRIVLGMIATLGWEARQLDFDMAYLEAEVEEEIYVEPPEAY 438
            T  ++ EP    EA TSS  PQW  AI  E+D  +    W++V+ P G   LG R +FKRK+  DG I+KYK RLV KGFRQ +G+ Y ++ SP     SIR+VL + A    E  Q+D   A+L  ++EEEIY+E PE +
Sbjct:  129 TYMVEGEPQTYREAVTSSEGPQWKEAIKNEIDSILQNHTWELVDLPPGCKPLGYRWIFKRKMKADGSIDKYKARLVIKGFRQKEGLDYFDTYSPVTRITSIRLVLAIAALRNLEVHQMDVKTAFLNGDLEEEIYMEQPEGF 269          
BLAST of mRNA_H-elongata_contig135460.2507.1 vs. uniprot
Match: A0A5N6LMS3_9ASTR (Uncharacterized protein n=1 Tax=Mikania micrantha TaxID=192012 RepID=A0A5N6LMS3_9ASTR)

HSP 1 Score: 118 bits (296), Expect = 6.390e-28
Identity = 62/141 (43.97%), Postives = 86/141 (60.99%), Query Frame = 1
Query:   16 TRRLDPEPTNMGEAQTSSRWPQWNRAIAREMDGQISRGVWQVVERPKGKTVLGTRVVFKRKLDKDGRIEKYKCRLVAKGFRQVKGIHYEESSSPTPAQASIRIVLGMIATLGWEARQLDFDMAYLEAEVEEEIYVEPPEAY 438
            T  ++ EP    +A TSS  PQW  AI  E+D  +    W++++ P G   LG R +FKRK+  DG I+KYK RLV KGFRQ +G+ Y ++ SP     SIR+VLG+ A    E  Q+D   A+L  ++EEEIY+E PE +
Sbjct:  770 TYMVEGEPQTYRDAVTSSEGPQWKEAIKNEIDSILQNHTWELLDLPPGCKPLGYRWIFKRKMKADGSIDKYKARLVIKGFRQKEGVDYFDTYSPVTRITSIRLVLGIAALRNLEVHQMDVKTAFLNGDLEEEIYMEQPEGF 910          
BLAST of mRNA_H-elongata_contig135460.2507.1 vs. uniprot
Match: A0A5N6NTS6_9ASTR (Integrase catalytic domain-containing protein n=1 Tax=Mikania micrantha TaxID=192012 RepID=A0A5N6NTS6_9ASTR)

HSP 1 Score: 118 bits (295), Expect = 6.600e-28
Identity = 63/141 (44.68%), Postives = 85/141 (60.28%), Query Frame = 1
Query:   16 TRRLDPEPTNMGEAQTSSRWPQWNRAIAREMDGQISRGVWQVVERPKGKTVLGTRVVFKRKLDKDGRIEKYKCRLVAKGFRQVKGIHYEESSSPTPAQASIRIVLGMIATLGWEARQLDFDMAYLEAEVEEEIYVEPPEAY 438
            T  ++ EP    EA TSS  PQW  AI  E+D  +    W++V+ P G   LG R +FKRK+  DG I+KYK RLV KGFRQ +G+ Y ++ SP     SIR+VL + A    E  Q+D   A+L  ++EEEIY+E PE +
Sbjct:  202 TYMVEGEPQTYREAVTSSEGPQWKEAIKNEIDSILQNHTWELVDLPPGCKPLGYRWIFKRKMKADGSIDKYKARLVIKGFRQKEGLDYFDTYSPVTRITSIRLVLAIAALRNLEVHQMDVKTAFLNGDLEEEIYMEQPEGF 342          
BLAST of mRNA_H-elongata_contig135460.2507.1 vs. uniprot
Match: A0A5N6MBP8_9ASTR (Reverse transcriptase Ty1/copia-type domain-containing protein n=2 Tax=Mikania micrantha TaxID=192012 RepID=A0A5N6MBP8_9ASTR)

HSP 1 Score: 118 bits (295), Expect = 7.440e-28
Identity = 63/141 (44.68%), Postives = 85/141 (60.28%), Query Frame = 1
Query:   16 TRRLDPEPTNMGEAQTSSRWPQWNRAIAREMDGQISRGVWQVVERPKGKTVLGTRVVFKRKLDKDGRIEKYKCRLVAKGFRQVKGIHYEESSSPTPAQASIRIVLGMIATLGWEARQLDFDMAYLEAEVEEEIYVEPPEAY 438
            T  ++ EP    EA TSS  PQW  AI  E+D  +    W++V+ P G   LG R +FKRK+  DG I+KYK RLV KGFRQ +G+ Y ++ SP     SIR+VL + A    E  Q+D   A+L  ++EEEIY+E PE +
Sbjct:  129 TYMVEGEPQTYREAVTSSEGPQWKEAIKNEIDSILQNHTWELVDLPPGCKPLGYRWIFKRKMKADGSIDKYKARLVIKGFRQKEGLDYFDTYSPVTRITSIRLVLAIAALRNLEVHQMDVKTAFLNGDLEEEIYMEQPEGF 269          
BLAST of mRNA_H-elongata_contig135460.2507.1 vs. uniprot
Match: A0A5N6MWY0_9ASTR (Reverse transcriptase Ty1/copia-type domain-containing protein n=2 Tax=Mikania micrantha TaxID=192012 RepID=A0A5N6MWY0_9ASTR)

HSP 1 Score: 117 bits (294), Expect = 8.540e-28
Identity = 63/141 (44.68%), Postives = 86/141 (60.99%), Query Frame = 1
Query:   16 TRRLDPEPTNMGEAQTSSRWPQWNRAIAREMDGQISRGVWQVVERPKGKTVLGTRVVFKRKLDKDGRIEKYKCRLVAKGFRQVKGIHYEESSSPTPAQASIRIVLGMIATLGWEARQLDFDMAYLEAEVEEEIYVEPPEAY 438
            T  ++ EP    EA TSS  PQW  AI  E+D  +   +W++V+ P G   LG R +FKRK+  DG I+KYK RLV KGFRQ +G+ Y ++ SP     SIR+VL + A    E  Q+D   A+L  ++EEEIY+E PE +
Sbjct:   64 TYMVEGEPQTYREAVTSSEGPQWKEAIKNEIDLILQNHIWELVDLPPGCKPLGYRWIFKRKMKADGSIDKYKARLVIKGFRQKEGLDYFDTYSPVTRITSIRLVLAIAALRNLEVHQMDVKTAFLNGDLEEEIYMEQPEGF 204          
BLAST of mRNA_H-elongata_contig135460.2507.1 vs. uniprot
Match: A0A5N6NLM6_9ASTR (Uncharacterized protein n=1 Tax=Mikania micrantha TaxID=192012 RepID=A0A5N6NLM6_9ASTR)

HSP 1 Score: 118 bits (295), Expect = 8.670e-28
Identity = 62/141 (43.97%), Postives = 85/141 (60.28%), Query Frame = 1
Query:   16 TRRLDPEPTNMGEAQTSSRWPQWNRAIAREMDGQISRGVWQVVERPKGKTVLGTRVVFKRKLDKDGRIEKYKCRLVAKGFRQVKGIHYEESSSPTPAQASIRIVLGMIATLGWEARQLDFDMAYLEAEVEEEIYVEPPEAY 438
            T  ++ EP    +A TSS  PQW  AI  E+D  +    W++V+ P G   LG R +FKRK+  DG I+KYK RLV KGFRQ +G+ Y ++ SP     SIR+VL + A    E  Q+D   A+L  ++EEEIY+E PE +
Sbjct:  763 TYMVEGEPQTYRDAVTSSEGPQWKEAIKNEIDSILQNHTWEIVDLPPGCKPLGYRWIFKRKMKADGSIDKYKARLVIKGFRQKEGVDYFDTYSPVTRITSIRLVLAIAALRNLEVHQMDVKTAFLNGDLEEEIYMEQPEGF 903          
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig135460.2507.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A401GN13_9APHY2.590e-2843.94Uncharacterized protein n=1 Tax=Sparassis crispa T... [more]
A0A5N6PKD3_9ASTR3.280e-2844.68Integrase catalytic domain-containing protein n=1 ... [more]
J4VU23_BEAB24.470e-2840.13Retrotransposon protein, putative, Ty1-copia subcl... [more]
A0A5N6P275_9ASTR4.950e-2845.93Integrase catalytic domain-containing protein n=1 ... [more]
A0A5N6NFL8_9ASTR5.240e-2844.68Reverse transcriptase Ty1/copia-type domain-contai... [more]
A0A5N6LMS3_9ASTR6.390e-2843.97Uncharacterized protein n=1 Tax=Mikania micrantha ... [more]
A0A5N6NTS6_9ASTR6.600e-2844.68Integrase catalytic domain-containing protein n=1 ... [more]
A0A5N6MBP8_9ASTR7.440e-2844.68Reverse transcriptase Ty1/copia-type domain-contai... [more]
A0A5N6MWY0_9ASTR8.540e-2844.68Reverse transcriptase Ty1/copia-type domain-contai... [more]
A0A5N6NLM6_9ASTR8.670e-2843.97Uncharacterized protein n=1 Tax=Mikania micrantha ... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig135460contigH-elongata_contig135460:457..936 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Taxonomic scopeFungi
Seed ortholog score119.0
Seed ortholog evalue2e-24
Seed eggNOG ortholog176275.XP_008602273.1
EggNOG free text desc.Reverse transcriptase (RNA-dependent DNA polymerase)
EggNOG OGs21AV1@147550,38DPC@33154,3NUZ7@4751,3QNZW@4890,3TMCJ@5125,COG2801@1,KOG0017@2759
COG Functional cat.L
Best tax levelHypocreales
Best eggNOG OGNA|NA|NA
Hectar predicted targeting categoryother localisation
Exons1
Model size480
Cds size480
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929804.438104-CDS-H-elongata_contig135460:456..9361622929804.438104-CDS-H-elongata_contig135460:456..936Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig135460 457..936 -
1691679163.9748862-CDS-H-elongata_contig135460:456..9361691679163.9748862-CDS-H-elongata_contig135460:456..936Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig135460 457..936 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig135460.2507.1prot_H-elongata_contig135460.2507.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig135460 457..936 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig135460.2507.1

>prot_H-elongata_contig135460.2507.1 ID=prot_H-elongata_contig135460.2507.1|Name=mRNA_H-elongata_contig135460.2507.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=160bp
PTCGSTRRLDPEPTNMGEAQTSSRWPQWNRAIAREMDGQISRGVWQVVER
PKGKTVLGTRVVFKRKLDKDGRIEKYKCRLVAKGFRQVKGIHYEESSSPT
PAQASIRIVLGMIATLGWEARQLDFDMAYLEAEVEEEIYVEPPEAYRDSR
KQVGLLKKAM
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mRNA from alignment at H-elongata_contig135460:457..936-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig135460.2507.1 ID=mRNA_H-elongata_contig135460.2507.1|Name=mRNA_H-elongata_contig135460.2507.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=480bp|location=Sequence derived from alignment at H-elongata_contig135460:457..936- (Himanthalia elongata Himel1 dioecious)
CCGACATGCGGGTCCACGAGGCGGCTAGACCCAGAGCCGACAAACATGGG CGAGGCGCAAACGTCATCGAGGTGGCCGCAATGGAATAGGGCGATCGCAC GCGAGATGGATGGGCAAATTTCTCGAGGCGTGTGGCAGGTGGTGGAGCGC CCAAAAGGAAAGACGGTGTTGGGCACGAGAGTAGTTTTTAAGCGGAAACT CGACAAGGATGGAAGGATTGAAAAGTATAAATGTCGTCTCGTGGCGAAGG GTTTCAGGCAGGTCAAAGGCATACACTACGAGGAATCCTCCTCTCCGACT CCTGCGCAGGCCAGCATTAGAATAGTACTGGGCATGATCGCGACTCTCGG CTGGGAGGCGCGGCAGCTGGACTTCGACATGGCCTACCTGGAGGCCGAAG TGGAGGAGGAGATCTACGTTGAGCCCCCGGAGGCATACCGTGACTCCAGG AAGCAAGTCGGCCTACTAAAGAAGGCAATG
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Coding sequence (CDS) from alignment at H-elongata_contig135460:457..936-

>mRNA_H-elongata_contig135460.2507.1 ID=mRNA_H-elongata_contig135460.2507.1|Name=mRNA_H-elongata_contig135460.2507.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=960bp|location=Sequence derived from alignment at H-elongata_contig135460:457..936- (Himanthalia elongata Himel1 dioecious)
CCGACATGCGGGTCCACGAGGCGGCTAGACCCAGAGCCGACAAACATGGG
CGAGGCGCAAACGTCATCGAGGTGGCCGCAATGGAATAGGGCGATCGCAC
GCGAGATGGATGGGCAAATTTCTCGAGGCGTGTGGCAGGTGGTGGAGCGC
CCAAAAGGAAAGACGGTGTTGGGCACGAGAGTAGTTTTTAAGCGGAAACT
CGACAAGGATGGAAGGATTGAAAAGTATAAATGTCGTCTCGTGGCGAAGG
GTTTCAGGCAGGTCAAAGGCATACACTACGAGGAATCCTCCTCTCCGACT
CCTGCGCAGGCCAGCATTAGAATAGTACTGGGCATGATCGCGACTCTCGG
CTGGGAGGCGCGGCAGCTGGACTTCGACATGGCCTACCTGGAGGCCGAAG
TGGAGGAGGAGATCTACGTTGAGCCCCCGGAGGCATACCGTGACTCCAGG
AAGCAAGTCGGCCTACTAAAGAAGGCAATGCCGACATGCGGGTCCACGAG
GCGGCTAGACCCAGAGCCGACAAACATGGGCGAGGCGCAAACGTCATCGA
GGTGGCCGCAATGGAATAGGGCGATCGCACGCGAGATGGATGGGCAAATT
TCTCGAGGCGTGTGGCAGGTGGTGGAGCGCCCAAAAGGAAAGACGGTGTT
GGGCACGAGAGTAGTTTTTAAGCGGAAACTCGACAAGGATGGAAGGATTG
AAAAGTATAAATGTCGTCTCGTGGCGAAGGGTTTCAGGCAGGTCAAAGGC
ATACACTACGAGGAATCCTCCTCTCCGACTCCTGCGCAGGCCAGCATTAG
AATAGTACTGGGCATGATCGCGACTCTCGGCTGGGAGGCGCGGCAGCTGG
ACTTCGACATGGCCTACCTGGAGGCCGAAGTGGAGGAGGAGATCTACGTT
GAGCCCCCGGAGGCATACCGTGACTCCAGGAAGCAAGTCGGCCTACTAAA
GAAGGCAATG
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