mRNA_H-elongata_contig135460.2507.1 (mRNA) Himanthalia elongata Himel1 dioecious
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Overview
Homology
BLAST of mRNA_H-elongata_contig135460.2507.1 vs. uniprot
Match: A0A401GN13_9APHY (Uncharacterized protein n=1 Tax=Sparassis crispa TaxID=139825 RepID=A0A401GN13_9APHY) HSP 1 Score: 119 bits (299), Expect = 2.590e-28 Identity = 58/132 (43.94%), Postives = 84/132 (63.64%), Query Frame = 1
Query: 34 EPTNMGEAQTSSRWPQWNRAIAREMDGQISRGVWQVVERPKGKTVLGTRVVFKRKLDKDGRIEKYKCRLVAKGFRQVKGIHYEESSSPTPAQASIRIVLGMIATLGWEARQLDFDMAYLEAEVEEEIYVEPP 429
+P ++ EA S+ WP+W AIA+EM S G + +VE PK ++G++ VF+ K + +G IE YK RLVA+GF QV GI + E+ +P ASIR++L + A WE Q+D AYL ++EEEIY+ P
Sbjct: 921 DPASLNEAMQSTEWPKWKEAIAKEMQNLDSHGTYTLVEPPKNTNIVGSKFVFRIKHNAEGEIESYKARLVAQGFTQVPGIDFNETFAPVAKLASIRLILALAARYDWELHQMDVKGAYLNGDLEEEIYMRQP 1052
BLAST of mRNA_H-elongata_contig135460.2507.1 vs. uniprot
Match: A0A5N6PKD3_9ASTR (Integrase catalytic domain-containing protein n=1 Tax=Mikania micrantha TaxID=192012 RepID=A0A5N6PKD3_9ASTR) HSP 1 Score: 119 bits (298), Expect = 3.280e-28 Identity = 63/141 (44.68%), Postives = 86/141 (60.99%), Query Frame = 1
Query: 16 TRRLDPEPTNMGEAQTSSRWPQWNRAIAREMDGQISRGVWQVVERPKGKTVLGTRVVFKRKLDKDGRIEKYKCRLVAKGFRQVKGIHYEESSSPTPAQASIRIVLGMIATLGWEARQLDFDMAYLEAEVEEEIYVEPPEAY 438
T ++ EP EA TSS PQW AI E+D + +W++V+ P G LG R +FKRK+ DG I+KYK RLV KGFRQ +G+ Y ++ SP SIR+VL + A E Q+D A+L ++EEEIY+E PE +
Sbjct: 285 TYMVEGEPQTYREAVTSSEGPQWKEAIKNEIDSILQNHIWELVDLPPGCKPLGYRWIFKRKMKADGSIDKYKARLVIKGFRQKEGLDYFDTYSPVTRITSIRLVLAIAALRNLEVHQMDVKTAFLNGDLEEEIYMEQPEGF 425
BLAST of mRNA_H-elongata_contig135460.2507.1 vs. uniprot
Match: J4VU23_BEAB2 (Retrotransposon protein, putative, Ty1-copia subclass n=1 Tax=Beauveria bassiana (strain ARSEF 2860) TaxID=655819 RepID=J4VU23_BEAB2) HSP 1 Score: 117 bits (292), Expect = 4.470e-28 Identity = 61/152 (40.13%), Postives = 88/152 (57.89%), Query Frame = 1
Query: 25 LDPEPTNMGEAQTSSRWPQWNRAIAREMDGQISRGVWQVVERPKGKTVLGTRVVFKRKLDKDGRIEKYKCRLVAKGFRQVKGIHYEESSSPTPAQASIRIVLGMIATLGWEARQLDFDMAYLEAEVEEEIYVEPPEAYRDSRKQVGLLKKAM 480
L PEP N A S+ QW +A+ E + I W VV+RP + VL R VFKRKL DG + ++K R V +GF Q+ G+ ++E+ + AS RI+ + A GW+ Q+D A+L +E EI+VEPPE Y ++R QV L K++
Sbjct: 112 LGPEPNNRKSALASAEREQWEQAMQEEYNSLIENQTWTVVKRPADRKVLTGRWVFKRKLGSDGEVARHKARFVVRGFSQIYGLDFDETYASVVKSASYRILFALQARYGWKCHQMDIKTAFLNGNLEHEIFVEPPEGYPEARNQVLKLCKSL 263
BLAST of mRNA_H-elongata_contig135460.2507.1 vs. uniprot
Match: A0A5N6P275_9ASTR (Integrase catalytic domain-containing protein n=1 Tax=Mikania micrantha TaxID=192012 RepID=A0A5N6P275_9ASTR) HSP 1 Score: 117 bits (294), Expect = 4.950e-28 Identity = 62/135 (45.93%), Postives = 82/135 (60.74%), Query Frame = 1
Query: 34 EPTNMGEAQTSSRWPQWNRAIAREMDGQISRGVWQVVERPKGKTVLGTRVVFKRKLDKDGRIEKYKCRLVAKGFRQVKGIHYEESSSPTPAQASIRIVLGMIATLGWEARQLDFDMAYLEAEVEEEIYVEPPEAY 438
EP +A TSS PQW AI E+D + W++V+ P G LG R +FKRK+ DG I+KYK RLV KGFRQ +G+ Y +S SP SIR+VL + A E Q+D A+L ++EEEIY+E PE +
Sbjct: 284 EPQTYRDAVTSSEGPQWKEAIKNEIDSILQNHTWELVDLPPGCKPLGYRWIFKRKMKADGSIDKYKARLVIKGFRQKEGVDYFDSYSPVTRITSIRLVLAIAALRNLEVHQMDVKTAFLNGDLEEEIYMEQPEGF 418
BLAST of mRNA_H-elongata_contig135460.2507.1 vs. uniprot
Match: A0A5N6NFL8_9ASTR (Reverse transcriptase Ty1/copia-type domain-containing protein n=1 Tax=Mikania micrantha TaxID=192012 RepID=A0A5N6NFL8_9ASTR) HSP 1 Score: 118 bits (295), Expect = 5.240e-28 Identity = 63/141 (44.68%), Postives = 85/141 (60.28%), Query Frame = 1
Query: 16 TRRLDPEPTNMGEAQTSSRWPQWNRAIAREMDGQISRGVWQVVERPKGKTVLGTRVVFKRKLDKDGRIEKYKCRLVAKGFRQVKGIHYEESSSPTPAQASIRIVLGMIATLGWEARQLDFDMAYLEAEVEEEIYVEPPEAY 438
T ++ EP EA TSS PQW AI E+D + W++V+ P G LG R +FKRK+ DG I+KYK RLV KGFRQ +G+ Y ++ SP SIR+VL + A E Q+D A+L ++EEEIY+E PE +
Sbjct: 129 TYMVEGEPQTYREAVTSSEGPQWKEAIKNEIDSILQNHTWELVDLPPGCKPLGYRWIFKRKMKADGSIDKYKARLVIKGFRQKEGLDYFDTYSPVTRITSIRLVLAIAALRNLEVHQMDVKTAFLNGDLEEEIYMEQPEGF 269
BLAST of mRNA_H-elongata_contig135460.2507.1 vs. uniprot
Match: A0A5N6LMS3_9ASTR (Uncharacterized protein n=1 Tax=Mikania micrantha TaxID=192012 RepID=A0A5N6LMS3_9ASTR) HSP 1 Score: 118 bits (296), Expect = 6.390e-28 Identity = 62/141 (43.97%), Postives = 86/141 (60.99%), Query Frame = 1
Query: 16 TRRLDPEPTNMGEAQTSSRWPQWNRAIAREMDGQISRGVWQVVERPKGKTVLGTRVVFKRKLDKDGRIEKYKCRLVAKGFRQVKGIHYEESSSPTPAQASIRIVLGMIATLGWEARQLDFDMAYLEAEVEEEIYVEPPEAY 438
T ++ EP +A TSS PQW AI E+D + W++++ P G LG R +FKRK+ DG I+KYK RLV KGFRQ +G+ Y ++ SP SIR+VLG+ A E Q+D A+L ++EEEIY+E PE +
Sbjct: 770 TYMVEGEPQTYRDAVTSSEGPQWKEAIKNEIDSILQNHTWELLDLPPGCKPLGYRWIFKRKMKADGSIDKYKARLVIKGFRQKEGVDYFDTYSPVTRITSIRLVLGIAALRNLEVHQMDVKTAFLNGDLEEEIYMEQPEGF 910
BLAST of mRNA_H-elongata_contig135460.2507.1 vs. uniprot
Match: A0A5N6NTS6_9ASTR (Integrase catalytic domain-containing protein n=1 Tax=Mikania micrantha TaxID=192012 RepID=A0A5N6NTS6_9ASTR) HSP 1 Score: 118 bits (295), Expect = 6.600e-28 Identity = 63/141 (44.68%), Postives = 85/141 (60.28%), Query Frame = 1
Query: 16 TRRLDPEPTNMGEAQTSSRWPQWNRAIAREMDGQISRGVWQVVERPKGKTVLGTRVVFKRKLDKDGRIEKYKCRLVAKGFRQVKGIHYEESSSPTPAQASIRIVLGMIATLGWEARQLDFDMAYLEAEVEEEIYVEPPEAY 438
T ++ EP EA TSS PQW AI E+D + W++V+ P G LG R +FKRK+ DG I+KYK RLV KGFRQ +G+ Y ++ SP SIR+VL + A E Q+D A+L ++EEEIY+E PE +
Sbjct: 202 TYMVEGEPQTYREAVTSSEGPQWKEAIKNEIDSILQNHTWELVDLPPGCKPLGYRWIFKRKMKADGSIDKYKARLVIKGFRQKEGLDYFDTYSPVTRITSIRLVLAIAALRNLEVHQMDVKTAFLNGDLEEEIYMEQPEGF 342
BLAST of mRNA_H-elongata_contig135460.2507.1 vs. uniprot
Match: A0A5N6MBP8_9ASTR (Reverse transcriptase Ty1/copia-type domain-containing protein n=2 Tax=Mikania micrantha TaxID=192012 RepID=A0A5N6MBP8_9ASTR) HSP 1 Score: 118 bits (295), Expect = 7.440e-28 Identity = 63/141 (44.68%), Postives = 85/141 (60.28%), Query Frame = 1
Query: 16 TRRLDPEPTNMGEAQTSSRWPQWNRAIAREMDGQISRGVWQVVERPKGKTVLGTRVVFKRKLDKDGRIEKYKCRLVAKGFRQVKGIHYEESSSPTPAQASIRIVLGMIATLGWEARQLDFDMAYLEAEVEEEIYVEPPEAY 438
T ++ EP EA TSS PQW AI E+D + W++V+ P G LG R +FKRK+ DG I+KYK RLV KGFRQ +G+ Y ++ SP SIR+VL + A E Q+D A+L ++EEEIY+E PE +
Sbjct: 129 TYMVEGEPQTYREAVTSSEGPQWKEAIKNEIDSILQNHTWELVDLPPGCKPLGYRWIFKRKMKADGSIDKYKARLVIKGFRQKEGLDYFDTYSPVTRITSIRLVLAIAALRNLEVHQMDVKTAFLNGDLEEEIYMEQPEGF 269
BLAST of mRNA_H-elongata_contig135460.2507.1 vs. uniprot
Match: A0A5N6MWY0_9ASTR (Reverse transcriptase Ty1/copia-type domain-containing protein n=2 Tax=Mikania micrantha TaxID=192012 RepID=A0A5N6MWY0_9ASTR) HSP 1 Score: 117 bits (294), Expect = 8.540e-28 Identity = 63/141 (44.68%), Postives = 86/141 (60.99%), Query Frame = 1
Query: 16 TRRLDPEPTNMGEAQTSSRWPQWNRAIAREMDGQISRGVWQVVERPKGKTVLGTRVVFKRKLDKDGRIEKYKCRLVAKGFRQVKGIHYEESSSPTPAQASIRIVLGMIATLGWEARQLDFDMAYLEAEVEEEIYVEPPEAY 438
T ++ EP EA TSS PQW AI E+D + +W++V+ P G LG R +FKRK+ DG I+KYK RLV KGFRQ +G+ Y ++ SP SIR+VL + A E Q+D A+L ++EEEIY+E PE +
Sbjct: 64 TYMVEGEPQTYREAVTSSEGPQWKEAIKNEIDLILQNHIWELVDLPPGCKPLGYRWIFKRKMKADGSIDKYKARLVIKGFRQKEGLDYFDTYSPVTRITSIRLVLAIAALRNLEVHQMDVKTAFLNGDLEEEIYMEQPEGF 204
BLAST of mRNA_H-elongata_contig135460.2507.1 vs. uniprot
Match: A0A5N6NLM6_9ASTR (Uncharacterized protein n=1 Tax=Mikania micrantha TaxID=192012 RepID=A0A5N6NLM6_9ASTR) HSP 1 Score: 118 bits (295), Expect = 8.670e-28 Identity = 62/141 (43.97%), Postives = 85/141 (60.28%), Query Frame = 1
Query: 16 TRRLDPEPTNMGEAQTSSRWPQWNRAIAREMDGQISRGVWQVVERPKGKTVLGTRVVFKRKLDKDGRIEKYKCRLVAKGFRQVKGIHYEESSSPTPAQASIRIVLGMIATLGWEARQLDFDMAYLEAEVEEEIYVEPPEAY 438
T ++ EP +A TSS PQW AI E+D + W++V+ P G LG R +FKRK+ DG I+KYK RLV KGFRQ +G+ Y ++ SP SIR+VL + A E Q+D A+L ++EEEIY+E PE +
Sbjct: 763 TYMVEGEPQTYRDAVTSSEGPQWKEAIKNEIDSILQNHTWEIVDLPPGCKPLGYRWIFKRKMKADGSIDKYKARLVIKGFRQKEGVDYFDTYSPVTRITSIRLVLAIAALRNLEVHQMDVKTAFLNGDLEEEIYMEQPEGF 903 The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig135460.2507.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_H-elongata_contig135460.2507.1 >prot_H-elongata_contig135460.2507.1 ID=prot_H-elongata_contig135460.2507.1|Name=mRNA_H-elongata_contig135460.2507.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=160bp PTCGSTRRLDPEPTNMGEAQTSSRWPQWNRAIAREMDGQISRGVWQVVERback to top mRNA from alignment at H-elongata_contig135460:457..936- Legend: CDSpolypeptide Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_H-elongata_contig135460.2507.1 ID=mRNA_H-elongata_contig135460.2507.1|Name=mRNA_H-elongata_contig135460.2507.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=480bp|location=Sequence derived from alignment at H-elongata_contig135460:457..936- (Himanthalia elongata Himel1 dioecious)back to top Coding sequence (CDS) from alignment at H-elongata_contig135460:457..936- >mRNA_H-elongata_contig135460.2507.1 ID=mRNA_H-elongata_contig135460.2507.1|Name=mRNA_H-elongata_contig135460.2507.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=960bp|location=Sequence derived from alignment at H-elongata_contig135460:457..936- (Himanthalia elongata Himel1 dioecious)back to top |