mRNA_H-elongata_contig102882.250.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig102882.250.1
Unique NamemRNA_H-elongata_contig102882.250.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
[Close]
BLAST of mRNA_H-elongata_contig102882.250.1 vs. uniprot
Match: D8LD96_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LD96_ECTSI)

HSP 1 Score: 220 bits (561), Expect = 1.370e-67
Identity = 120/166 (72.29%), Postives = 130/166 (78.31%), Query Frame = 1 
Query:   52 RETVQLLTTPGPTRVTIVGRREKENASEGVPGK---RGIGGGGNGR-RFAVLTVHAAGHNHRTCFGALERELEKDEELG--GVVFYHVDVPGHEEERSDDVDAKELSLEALAAQLLQVTIQLGLEWFVGLGAGAGANVLLRYACDNPDRVAGLILANPSADGAGER 531
            RETV +LTTPGPTRVTIVG R    +  G   K    G GGG  GR R AVLT+HAAGHNHRTC G LERE  KDEELG  GVVFYHVD PGHEEE++ DV+AK LSLEA AAQLL+VTIQLGLEWFVGLG GAGANVLLR+ACDNP +VAGLILAN S + AG R
Sbjct:  171 RETVSVLTTPGPTRVTIVGDRGGGRSHGGTSAKVGGAGEGGGSGGRKRLAVLTLHAAGHNHRTCLGGLEREAAKDEELGAGGVVFYHVDTPGHEEEQAKDVEAKALSLEAQAAQLLEVTIQLGLEWFVGLGVGAGANVLLRFACDNPGKVAGLILANASGEAAGRR 336
[Close]
BLAST of mRNA_H-elongata_contig102882.250.1 vs. uniprot
Match: A0A6H5JJV4_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JJV4_9PHAE)

HSP 1 Score: 217 bits (552), Expect = 5.810e-66
Identity = 117/166 (70.48%), Postives = 130/166 (78.31%), Query Frame = 1 
Query:   52 RETVQLLTTPGPTRVTIVGRREKENASEG----VPGKRGIGGGGNGRRFAVLTVHAAGHNHRTCFGALERELEKDEELG--GVVFYHVDVPGHEEERSDDVDAKELSLEALAAQLLQVTIQLGLEWFVGLGAGAGANVLLRYACDNPDRVAGLILANPSADGAGER 531
            RETV +LTTPGPTRVTIVG R    +  G    V G R   G G  +R AVLT+HAAGHNHRTC G LERE+ KDEELG  GVVF+HVD PGHEEE++ DV+AK LSLEA A QLL+VTIQLGLEWFVGLG GAGANVLLR+ACDNP +VAGLILAN SA+ AG R
Sbjct:  114 RETVCVLTTPGPTRVTIVGDRGGGRSHGGTSAKVGGAREXXGSGGRKRLAVLTMHAAGHNHRTCLGGLEREVAKDEELGAGGVVFFHVDTPGHEEEQAKDVEAKALSLEAQATQLLEVTIQLGLEWFVGLGVGAGANVLLRFACDNPGKVAGLILANASAEAAGRR 279
[Close]
BLAST of mRNA_H-elongata_contig102882.250.1 vs. uniprot
Match: A0A7S2D3T3_9STRA (Hypothetical protein n=1 Tax=Dictyocha speculum TaxID=35687 RepID=A0A7S2D3T3_9STRA)

HSP 1 Score: 109 bits (272), Expect = 6.370e-25
Identity = 68/162 (41.98%), Postives = 86/162 (53.09%), Query Frame = 1 
Query:   31 LPSPPMPRETVQLLTT-PGPTRVTIVGRREKENASEGVPGKRGIGGGGNGRRFAVLTVHAAGHNHRTCFGALERELEKDEELGGVVFYHVDVPGHEEERSDDVDAKELSLEALAAQLLQVTIQLGLEW-FVGLGAGAGANVLLRYACDNPDRVAGLILANPS 510
            +P  PMP  + +L+ T P PT++T++G  +                     R   +T H  G NHR CFG     L     LG V   H+DVPGHEE  S     ++LSLE L  QL  +   L L+  FVG+G GAGANVLLRY  D+ D+V GLILANPS
Sbjct:  114 IPEKPMPPISTRLIETQPHPTKLTLIGDLDTA-------------------RLVYITYHDVGLNHRICFGRFVSHLNSCGMLGEVCMVHIDVPGHEEGASRFAKDEKLSLEQLTQQLNVIVTHLDLKQKFVGIGVGAGANVLLRYTADHGDKVGGLILANPS 256
[Close]
BLAST of mRNA_H-elongata_contig102882.250.1 vs. uniprot
Match: A0A7S2RI68_9STRA (Hypothetical protein n=1 Tax=Rhizochromulina marina TaxID=1034831 RepID=A0A7S2RI68_9STRA)

HSP 1 Score: 99.4 bits (246), Expect = 2.500e-21
Identity = 63/162 (38.89%), Postives = 84/162 (51.85%), Query Frame = 1 
Query:   43 PMPRETVQLLTT-PGPTRVTIVGRREKENASEGVPGKRGIGGGGNGRRFAVLTVHAAGHNHRTCFGALERELEKDEELGGVVFYHVDVPGHEEERSD--DVDAKELSLEALAAQLLQVTIQLGLEWFVGLGAGAGANVLLRYACDNPDRVAGLILANPSADG 519
            P+P  T +++ T P PT+VTIVG  +                        ++T H  G NHR CFG L   L     L  V   H+D PGHE+  +    +D K L+LE LA  + Q+  +L +  FVG+GAGAGANVLLRY  +NP    GL+L NP+  G
Sbjct:  109 PLPPSTTRVVDTDPIPTKVTIVGDLKTAVT-------------------VLVTYHDIGLNHRWCFGRLMHWLNSANMLSRVAVVHIDAPGHEDGAAALASLDPKVLNLERLAQHVKQILAKLEISRFVGVGAGAGANVLLRYVSENPGVARGLVLQNPTLQG 251
[Close]
BLAST of mRNA_H-elongata_contig102882.250.1 vs. uniprot
Match: A0A553NNB1_9TELE (Uncharacterized protein n=1 Tax=Danionella translucida TaxID=623744 RepID=A0A553NNB1_9TELE)

HSP 1 Score: 79.3 bits (194), Expect = 2.990e-14
Identity = 45/118 (38.14%), Postives = 64/118 (54.24%), Query Frame = 1 
Query:  175 GRRFAVLTVHAAGHNHRTCFGALERELEKDEELGGVVFYHVDVPGHEEERSD-DVDAKELSLEALAAQLLQVTIQLGLEWFVGLGAGAGANVLLRYACDNPDRVAGLILANPSADGAG 525
            G R  +LT H  G NH++CF +L    +  E +      HVD PG +E  S    +    S++ L+  L  V    G++  +GLG GAGAN+L R+A  +PD V G++L N SA G G
Sbjct:   37 GNRPTILTFHDIGLNHKSCFESLFNHKDMHEIMQHFAVCHVDAPGQQEGASTLPTNYTYPSMDQLSETLPLVLKHFGIKSVIGLGIGAGANILARFALKHPDMVEGVVLVNMSAQGEG 154
[Close]
BLAST of mRNA_H-elongata_contig102882.250.1 vs. uniprot
Match: A0A452RXN8_URSAM (Protein NDRG1 n=1 Tax=Ursus americanus TaxID=9643 RepID=A0A452RXN8_URSAM)

HSP 1 Score: 79.0 bits (193), Expect = 4.180e-14
Identity = 47/118 (39.83%), Postives = 63/118 (53.39%), Query Frame = 1 
Query:  175 GRRFAVLTVHAAGHNHRTCFGALERELEKDEELGGVVFYHVDVPGHEE-ERSDDVDAKELSLEALAAQLLQVTIQLGLEWFVGLGAGAGANVLLRYACDNPDRVAGLIL--ANPSADG 519
            G R  +LT H  G NH+TC+  L    +  E        HVD PG ++   S  V     S++ LA  L  V  Q GL+  +G+G GAGA +L R+A DNP+ V GL+L   NP A+G
Sbjct:   38 GNRPVILTYHDIGMNHKTCYNPLFNSEDMQEITQHFAVCHVDAPGQQDGAASFPVGYMYPSMDQLAEMLPGVLHQFGLKSVIGMGTGAGAYILTRFALDNPEMVEGLVLINVNPCAEG 155
[Close]
BLAST of mRNA_H-elongata_contig102882.250.1 vs. uniprot
Match: A0A384BIG4_URSMA (Protein NDRG1 n=8 Tax=Carnivora TaxID=33554 RepID=A0A384BIG4_URSMA)

HSP 1 Score: 79.0 bits (193), Expect = 4.430e-14
Identity = 47/118 (39.83%), Postives = 63/118 (53.39%), Query Frame = 1 
Query:  175 GRRFAVLTVHAAGHNHRTCFGALERELEKDEELGGVVFYHVDVPGHEE-ERSDDVDAKELSLEALAAQLLQVTIQLGLEWFVGLGAGAGANVLLRYACDNPDRVAGLIL--ANPSADG 519
            G R  +LT H  G NH+TC+  L    +  E        HVD PG ++   S  V     S++ LA  L  V  Q GL+  +G+G GAGA +L R+A DNP+ V GL+L   NP A+G
Sbjct:   54 GNRPVILTYHDIGMNHKTCYNPLFNSEDMQEITQHFAVCHVDAPGQQDGAASFPVGYMYPSMDQLAEMLPGVLHQFGLKSVIGMGTGAGAYILTRFALDNPEMVEGLVLINVNPCAEG 171
[Close]
BLAST of mRNA_H-elongata_contig102882.250.1 vs. uniprot
Match: UPI0015A8392F (protein NDRG2 n=1 Tax=Anguilla anguilla TaxID=7936 RepID=UPI0015A8392F)

HSP 1 Score: 78.2 bits (191), Expect = 8.080e-14
Identity = 46/124 (37.10%), Postives = 64/124 (51.61%), Query Frame = 1 
Query:  157 IGGGGNGRRFAVLTVHAAGHNHRTCFGALERELEKDEELGGVVFYHVDVPGHEEERSD-DVDAKELSLEALAAQLLQVTIQLGLEWFVGLGAGAGANVLLRYACDNPDRVAGLILANPSADGAG 525
            + G GN RR  +LT H  G  H++CF  L +  E  E + G    H+D PG EE  +   +  +  SLE LA  +  V         +G+G GAGAN+L  ++ +NPD V GL+L N  A   G
Sbjct:   54 VHGTGNTRRPPILTFHDVGLEHKSCFSTLFKFEEMQEIVKGFTVIHIDAPGQEEGAAAYPLGYQYASLEQLADMIPAVLQYFNARTVIGVGVGAGANILSNFSLNNPDLVEGLVLINIDAHARG 177
[Close]
BLAST of mRNA_H-elongata_contig102882.250.1 vs. uniprot
Match: H3BNE7_HUMAN (Protein NDRG4 (Fragment) n=3 Tax=Hominidae TaxID=9604 RepID=H3BNE7_HUMAN)

HSP 1 Score: 75.5 bits (184), Expect = 9.470e-14
Identity = 47/124 (37.90%), Postives = 61/124 (49.19%), Query Frame = 1 
Query:  157 IGGGGNGRRFAVLTVHAAGHNHRTCFGALERELEKDEELGGVVFYHVDVPGHEEERSDDVDAKEL-SLEALAAQLLQVTIQLGLEWFVGLGAGAGANVLLRYACDNPDRVAGLILANPSADGAG 525
            I G   G R A+LT H  G NH+ CF       +  E     V  HVD PG +   S      +  S+E LAA L  V    G ++ +G+G GAGA VL ++A   PD V GL+L N   +G G
Sbjct:    4 IRGSPKGNRPAILTYHDVGLNHKLCFNTFFNFEDMQEITKHFVVCHVDAPGQQVGASQFPQGYQFPSMEQLAAMLPSVVQHFGFKYVIGIGVGAGAYVLAKFALIFPDLVEGLVLVNIDPNGKG 127
[Close]
BLAST of mRNA_H-elongata_contig102882.250.1 vs. uniprot
Match: A0A6A1QBH1_BALPH (Protein NDRG1 n=1 Tax=Balaenoptera physalus TaxID=9770 RepID=A0A6A1QBH1_BALPH)

HSP 1 Score: 76.3 bits (186), Expect = 9.710e-14
Identity = 44/118 (37.29%), Postives = 62/118 (52.54%), Query Frame = 1 
Query:  175 GRRFAVLTVHAAGHNHRTCFGALERELEKDEELGGVVFYHVDVPGHEEERSD-DVDAKELSLEALAAQLLQVTIQLGLEWFVGLGAGAGANVLLRYACDNPDRVAGLIL--ANPSADG 519
            G R  +LT H  G NH+TC+  L    +  E        HVD PG ++  +         S++ LA  L  V  Q GL+  +G+G GAGA +L R+A +NP+ V GL+L   NP A+G
Sbjct:   72 GNRPVILTYHDIGMNHKTCYNPLFNSEDMQEITQHFAVCHVDAPGQQDSAASFPTGYMYPSMDQLAEMLPGVLHQFGLKSIIGMGTGAGAYILTRFALNNPEMVEGLVLINVNPCAEG 189
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig102882.250.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D8LD96_ECTSI1.370e-6772.29Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A6H5JJV4_9PHAE5.810e-6670.48Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A7S2D3T3_9STRA6.370e-2541.98Hypothetical protein n=1 Tax=Dictyocha speculum Ta... [more]
A0A7S2RI68_9STRA2.500e-2138.89Hypothetical protein n=1 Tax=Rhizochromulina marin... [more]
A0A553NNB1_9TELE2.990e-1438.14Uncharacterized protein n=1 Tax=Danionella translu... [more]
A0A452RXN8_URSAM4.180e-1439.83Protein NDRG1 n=1 Tax=Ursus americanus TaxID=9643 ... [more]
A0A384BIG4_URSMA4.430e-1439.83Protein NDRG1 n=8 Tax=Carnivora TaxID=33554 RepID=... [more]
UPI0015A8392F8.080e-1437.10protein NDRG2 n=1 Tax=Anguilla anguilla TaxID=7936... [more]
H3BNE7_HUMAN9.470e-1437.90Protein NDRG4 (Fragment) n=3 Tax=Hominidae TaxID=9... [more]
A0A6A1QBH1_BALPH9.710e-1437.29Protein NDRG1 n=1 Tax=Balaenoptera physalus TaxID=... [more]

Pages

back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig102882contigH-elongata_contig102882:655..2097 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score221.1
Seed ortholog evalue4.2e-55
Seed eggNOG ortholog2880.D8LD96
Preferred nameNDRG4
KEGG koko:K18266
GOsGO:0000003,GO:0001558,GO:0001655,GO:0001666,GO:0001775,GO:0001817,GO:0001818,GO:0001822,GO:0001932,GO:0001933,GO:0001934,GO:0001947,GO:0002009,GO:0002274,GO:0002376,GO:0003007,GO:0003008,GO:0003143,GO:0003674,GO:0005488,GO:0005515,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005737,GO:0005739,GO:0005768,GO:0005783,GO:0005789,GO:0005794,GO:0005813,GO:0005815,GO:0005829,GO:0005856,GO:0005874,GO:0005886,GO:0005911,GO:0005912,GO:0005913,GO:0006810,GO:0006928,GO:0006950,GO:0006974,GO:0007009,GO:0007154,GO:0007165,GO:0007272,GO:0007275,GO:0007276,GO:0007283,GO:0007368,GO:0007389,GO:0007399,GO:0007417,GO:0007420,GO:0007422,GO:0007507,GO:0007610,GO:0007611,GO:0007612,GO:0007632,GO:0008017,GO:0008092,GO:0008150,GO:0008283,GO:0008285,GO:0008306,GO:0008366,GO:0008542,GO:0009314,GO:0009416,GO:0009628,GO:0009653,GO:0009790,GO:0009799,GO:0009855,GO:0009887,GO:0009888,GO:0009892,GO:0009893,GO:0009966,GO:0009967,GO:0009968,GO:0009987,GO:0010001,GO:0010008,GO:0010035,GO:0010038,GO:0010256,GO:0010562,GO:0010563,GO:0010574,GO:0010604,GO:0010605,GO:0010640,GO:0010642,GO:0010646,GO:0010647,GO:0010648,GO:0010720,GO:0010941,GO:0010975,GO:0010976,GO:0012505,GO:0014037,GO:0014044,GO:0014706,GO:0014855,GO:0014910,GO:0014912,GO:0015630,GO:0015631,GO:0016020,GO:0016043,GO:0016049,GO:0016192,GO:0016323,GO:0016477,GO:0017016,GO:0017137,GO:0019220,GO:0019222,GO:0019899,GO:0019953,GO:0021782,GO:0022008,GO:0022011,GO:0022406,GO:0022414,GO:0023051,GO:0023052,GO:0023056,GO:0023057,GO:0030054,GO:0030154,GO:0030308,GO:0030330,GO:0030334,GO:0030336,GO:0030424,GO:0030426,GO:0030427,GO:0031090,GO:0031253,GO:0031267,GO:0031323,GO:0031324,GO:0031325,GO:0031344,GO:0031346,GO:0031399,GO:0031400,GO:0031401,GO:0031410,GO:0031982,GO:0031984,GO:0032268,GO:0032269,GO:0032270,GO:0032287,GO:0032292,GO:0032386,GO:0032501,GO:0032502,GO:0032504,GO:0032879,GO:0033002,GO:0033267,GO:0033554,GO:0035050,GO:0035239,GO:0035265,GO:0035295,GO:0035556,GO:0036293,GO:0036294,GO:0040007,GO:0040008,GO:0040011,GO:0040012,GO:0040013,GO:0042063,GO:0042127,GO:0042175,GO:0042221,GO:0042325,GO:0042326,GO:0042327,GO:0042552,GO:0042770,GO:0042981,GO:0042995,GO:0043005,GO:0043015,GO:0043067,GO:0043209,GO:0043217,GO:0043226,GO:0043227,GO:0043228,GO:0043229,GO:0043231,GO:0043232,GO:0043408,GO:0043409,GO:0043410,GO:0044422,GO:0044424,GO:0044425,GO:0044430,GO:0044432,GO:0044433,GO:0044440,GO:0044444,GO:0044446,GO:0044459,GO:0044463,GO:0044464,GO:0044703,GO:0045296,GO:0045321,GO:0045576,GO:0045595,GO:0045597,GO:0045664,GO:0045666,GO:0045926,GO:0045936,GO:0045937,GO:0046578,GO:0046579,GO:0048232,GO:0048278,GO:0048468,GO:0048471,GO:0048513,GO:0048518,GO:0048519,GO:0048522,GO:0048523,GO:0048562,GO:0048568,GO:0048583,GO:0048584,GO:0048585,GO:0048589,GO:0048598,GO:0048609,GO:0048660,GO:0048662,GO:0048699,GO:0048729,GO:0048731,GO:0048738,GO:0048793,GO:0048856,GO:0048869,GO:0048870,GO:0050767,GO:0050769,GO:0050789,GO:0050793,GO:0050794,GO:0050839,GO:0050877,GO:0050890,GO:0050896,GO:0051020,GO:0051049,GO:0051056,GO:0051057,GO:0051094,GO:0051128,GO:0051130,GO:0051171,GO:0051172,GO:0051173,GO:0051174,GO:0051179,GO:0051234,GO:0051239,GO:0051240,GO:0051241,GO:0051246,GO:0051247,GO:0051248,GO:0051270,GO:0051271,GO:0051640,GO:0051641,GO:0051674,GO:0051704,GO:0051716,GO:0051960,GO:0051962,GO:0055017,GO:0055037,GO:0055038,GO:0060038,GO:0060255,GO:0060284,GO:0060322,GO:0060341,GO:0060419,GO:0060429,GO:0060537,GO:0060562,GO:0060627,GO:0060973,GO:0061024,GO:0061371,GO:0065007,GO:0070161,GO:0070372,GO:0070373,GO:0070374,GO:0070482,GO:0070887,GO:0071453,GO:0071456,GO:0071840,GO:0071944,GO:0072001,GO:0072331,GO:0072359,GO:0080090,GO:0090361,GO:0097458,GO:0097708,GO:0098588,GO:0098590,GO:0098805,GO:0098827,GO:0099080,GO:0099081,GO:0099512,GO:0099513,GO:0120025,GO:0120035,GO:0120038,GO:0140056,GO:0150034,GO:1902531,GO:1902532,GO:1902533,GO:2000026,GO:2000145,GO:2000146,GO:2001135
EggNOG free text desc.nervous system development
EggNOG OGsKOG2931@1,KOG2931@2759
COG Functional cat.S
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko04147
Hectar predicted targeting categoryother localisation
Ec32 ortholog descriptionAlpha/Beta hydrolase fold
Ec32 orthologEc-25_002030.1
Exons2
Model size531
Cds size531
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929565.8405826-CDS-H-elongata_contig102882:654..8471622929565.8405826-CDS-H-elongata_contig102882:654..847Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig102882 655..847 -
1691679072.8957386-CDS-H-elongata_contig102882:654..8471691679072.8957386-CDS-H-elongata_contig102882:654..847Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig102882 655..847 -
1622929565.8571033-CDS-H-elongata_contig102882:1759..20971622929565.8571033-CDS-H-elongata_contig102882:1759..2097Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig102882 1760..2097 -
1691679072.918889-CDS-H-elongata_contig102882:1759..20971691679072.918889-CDS-H-elongata_contig102882:1759..2097Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig102882 1760..2097 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig102882.250.1prot_H-elongata_contig102882.250.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig102882 655..2097 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig102882.250.1

>prot_H-elongata_contig102882.250.1 ID=prot_H-elongata_contig102882.250.1|Name=mRNA_H-elongata_contig102882.250.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=177bp
VAATAAAITNLPSPPMPRETVQLLTTPGPTRVTIVGRREKENASEGVPGK
RGIGGGGNGRRFAVLTVHAAGHNHRTCFGALERELEKDEELGGVVFYHVD
VPGHEEERSDDVDAKELSLEALAAQLLQVTIQLGLEWFVGLGAGAGANVL
LRYACDNPDRVAGLILANPSADGAGER
back to top

mRNA from alignment at H-elongata_contig102882:655..2097-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig102882.250.1 ID=mRNA_H-elongata_contig102882.250.1|Name=mRNA_H-elongata_contig102882.250.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=1443bp|location=Sequence derived from alignment at H-elongata_contig102882:655..2097- (Himanthalia elongata Himel1 dioecious)
GTAGCAGCGACCGCCGCTGCCATCACCAACCTCCCCTCCCCTCCGATGCC
GCGGGAAACGGTACAACTCCTCACTACCCCGGGACCGACGCGCGTCACCA
TCGTGGGGAGGAGGGAGAAGGAGAACGCCTCGGAGGGAGTTCCTGGTAAA
AGAGGGATAGGAGGCGGAGGAAACGGGAGGCGATTTGCGGTCCTCACGGT
TCACGCCGCGGGTCACAATCATCGTACGTGCTTCGGCGCGCTCGAGCGGG
AGCTGGAGAAAGACGAGGAACTTGGAGGGGTGGTGTTTTATCACGTGGAT
GTTCCCGGCCACGAGGAAGAGCGGAGCGATGATGTCGAGTGAGAGGGCTT
TTCACGCGCACAAAAACAGCCAACAGTACATAACCGACGCACGTCTTGTT
TCCTTTGCTGTGGAATTACTCCATGAGAAAAACGATCAGCTTGAGCGTGG
GCGCCCTTTCTTTTTAAGCATACACACAGACACATACACACACAGAGGTG
CGCGTTTTATTGTGGGCAATGTAGCGTATATTTCTAAACAAATGGGCGTA
GGGTCGAGCGAGGGTCCTTGCCTTGGGTAGTTCACGCAACAGAACTTTTT
GCTATATTGTATACCTATTTTTTAAGTGTCTATTGTGTATCGCGTGTGTG
TTTTGATAGCTATGATTGCAATGGAGGGCCGGCCGCCTTTGTATATACCG
CTGTACATCGCTCGCGCGCGTACTCGTGTCCTTACACCTCTACGCGTACT
CGTGTGAACAGGGGGGGAAGACTTCTCCTCAAAAACTGGCGCAAACCATG
CCGTACCGCATCGTGCTGCGATGCTCACCCCTTTTCCAGTGCCTCGTGTT
GAGCGGAAAAGGTTTACTTTCGAACGTTAGCAGCGTACGGTAAACAGTGT
CACGTCCACCGGCTGTACTGGCTGACGGTATTTCTATGTCTGTATCTCTC
TCTCTGTATATCTTTCTTTGGATGAAAATTACCCCCCTCGGAATGAACAG
GAATTTTCTTGGAATTTTCTAGGAACGGGTAGCAGTACGAGAGCGAAACG
AATATCATTCCCCGCGTATGGTGTCTCCTGCTCGCGCTTAATAACGACAA
AAAGCCTCCCCTCTCTATACAGACCCAAAACACACACACATCATTATCTT
GCCTCTCTATCGTGGTTCCCCCTTTGCGGATTTCCGTTTGGCTGCTTGCA
CTCCTCTCAAAAATAAATAACTGAACGCCTTGTTTTTTGGAAACCCCAAG
CGCCAAGGAGCTCTCGCTCGAGGCGCTGGCGGCCCAGCTGCTCCAGGTGA
CGATCCAGCTGGGACTGGAGTGGTTCGTTGGCCTGGGCGCTGGCGCGGGG
GCGAACGTCCTTCTGAGGTACGCGTGCGACAACCCCGACAGGGTGGCGGG
GCTAATCCTGGCAAACCCTTCGGCTGACGGTGCCGGTGAGAGG
back to top

Coding sequence (CDS) from alignment at H-elongata_contig102882:655..2097-

>mRNA_H-elongata_contig102882.250.1 ID=mRNA_H-elongata_contig102882.250.1|Name=mRNA_H-elongata_contig102882.250.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=1062bp|location=Sequence derived from alignment at H-elongata_contig102882:655..2097- (Himanthalia elongata Himel1 dioecious)
GTAGCAGCGACCGCCGCTGCCATCACCAACCTCCCCTCCCCTCCGATGCC
GCGGGAAACGGTACAACTCCTCACTACCCCGGGACCGACGCGCGTCACCA
TCGTGGGGAGGAGGGAGAAGGAGAACGCCTCGGAGGGAGTTCCTGGTAAA
AGAGGGATAGGAGGCGGAGGAAACGGGAGGCGATTTGCGGTCCTCACGGT
TCACGCCGCGGGTCACAATCATCGTACGTGCTTCGGCGCGCTCGAGCGGG
AGCTGGAGAAAGACGAGGAACTTGGAGGGGTGGTGTTTTATCACGTGGAT
GTTCCCGGCCACGAGGAAGAGCGGAGCGATGATGTCGAGTAGCAGCGACC
GCCGCTGCCATCACCAACCTCCCCTCCCCTCCGATGCCGCGGGAAACGGT
ACAACTCCTCACTACCCCGGGACCGACGCGCGTCACCATCGTGGGGAGGA
GGGAGAAGGAGAACGCCTCGGAGGGAGTTCCTGGTAAAAGAGGGATAGGA
GGCGGAGGAAACGGGAGGCGATTTGCGGTCCTCACGGTTCACGCCGCGGG
TCACAATCATCGTACGTGCTTCGGCGCGCTCGAGCGGGAGCTGGAGAAAG
ACGAGGAACTTGGAGGGGTGGTGTTTTATCACGTGGATGTTCCCGGCCAC
GAGGAAGAGCGGAGCGATGATGTCGACGCCAAGGAGCTCTCGCTCGAGGC
GCTGGCGGCCCAGCTGCTCCAGGTGACGATCCAGCTGGGACTGGAGTGGT
TCGTTGGCCTGGGCGCTGGCGCGGGGGCGAACGTCCTTCTGAGGTACGCG
TGCGACAACCCCGACAGGGTGGCGGGGCTAATCCTGGCAAACCCTTCGGC
TGACGGTGCCGGTGAGAGGCGCCAAGGAGCTCTCGCTCGAGGCGCTGGCG
GCCCAGCTGCTCCAGGTGACGATCCAGCTGGGACTGGAGTGGTTCGTTGG
CCTGGGCGCTGGCGCGGGGGCGAACGTCCTTCTGAGGTACGCGTGCGACA
ACCCCGACAGGGTGGCGGGGCTAATCCTGGCAAACCCTTCGGCTGACGGT
GCCGGTGAGAGG
back to top