mRNA_H-elongata_contig135195.2485.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig135195.2485.1
Unique NamemRNA_H-elongata_contig135195.2485.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
BLAST of mRNA_H-elongata_contig135195.2485.1 vs. uniprot
Match: D7FMQ9_ECTSI (Aquarius intron-binding protein similar to aquarius n=2 Tax=Ectocarpus TaxID=2879 RepID=D7FMQ9_ECTSI)

HSP 1 Score: 249 bits (637), Expect = 2.810e-74
Identity = 115/131 (87.79%), Postives = 125/131 (95.42%), Query Frame = 1
Query:    1 KLNAQGRARPEIAALYNWRYKELGNLPLVQTRPQYLTANPGFAYDYQMVDVPDFEGRGETTPTSFFYQNLGEAEYVVAVFQYMRLLGYPADRISILTTYNGQCQLIEDVVRQRCSNNELFGNPGRIATVDK 393
            +LNAQGRARPEIAALYNWRYK+LGNL LVQT+PQYLTAN GF YDYQM+DVPDFEGRGETTPT+FFYQNLGEAEYVVA +QYMRLLGYPA +ISILTTYNGQCQLIEDVV+QRC+NN+LFG PGRIATVDK
Sbjct: 1814 QLNAQGRARPEIAALYNWRYKDLGNLALVQTKPQYLTANAGFGYDYQMIDVPDFEGRGETTPTAFFYQNLGEAEYVVATYQYMRLLGYPASKISILTTYNGQCQLIEDVVKQRCANNDLFGEPGRIATVDK 1944          
BLAST of mRNA_H-elongata_contig135195.2485.1 vs. uniprot
Match: A0A368G8L0_ANCCA (Uncharacterized protein n=1 Tax=Ancylostoma caninum TaxID=29170 RepID=A0A368G8L0_ANCCA)

HSP 1 Score: 196 bits (498), Expect = 1.640e-58
Identity = 87/131 (66.41%), Postives = 111/131 (84.73%), Query Frame = 1
Query:    1 KLNAQGRARPEIAALYNWRYKELGNLPLVQTRPQYLTANPGFAYDYQMVDVPDFEGRGETTPTSFFYQNLGEAEYVVAVFQYMRLLGYPADRISILTTYNGQCQLIEDVVRQRCSNNELFGNPGRIATVDK 393
            +L+ QGRAR EIA LY+WRYK+LGNLP V+  PQ+ TAN GFA+++Q++DVPDF G+GE+ P+ ++YQNLGEAEY VA+F YMR+LGYPAD+ISI+TTYNGQ QLI DVV +RC+NN L G P +I+TVDK
Sbjct:  142 QLDKQGRARSEIATLYSWRYKDLGNLPHVEALPQFQTANAGFAFNFQLIDVPDFNGQGESQPSPYYYQNLGEAEYAVALFTYMRILGYPADKISIITTYNGQAQLIRDVVARRCANNPLIGAPAKISTVDK 272          
BLAST of mRNA_H-elongata_contig135195.2485.1 vs. uniprot
Match: A0A7S2AK93_9DINO (Hypothetical protein n=1 Tax=Alexandrium andersonii TaxID=327968 RepID=A0A7S2AK93_9DINO)

HSP 1 Score: 189 bits (481), Expect = 1.540e-57
Identity = 88/130 (67.69%), Postives = 103/130 (79.23%), Query Frame = 1
Query:    4 LNAQGRARPEIAALYNWRYKELGNLPLVQTRPQYLTANPGFAYDYQMVDVPDFEGRGETTPTSFFYQNLGEAEYVVAVFQYMRLLGYPADRISILTTYNGQCQLIEDVVRQRCSNNELFGNPGRIATVDK 393
            LN QGRARP+IA LY+WRYK+LGNL  V T  +Y  AN G  YDYQ +DV DF+G+GET PT +FYQNLGEAEY VA+F YMRL+GYPA +ISIL+TYNGQ  LI DVVRQRC+ N LFG P +I TVD+
Sbjct:   50 LNLQGRARPDIADLYSWRYKDLGNLANVLTESRYRNANAGLTYDYQFIDVEDFDGKGETQPTPYFYQNLGEAEYCVALFMYMRLMGYPASKISILSTYNGQKALIRDVVRQRCAWNPLFGEPNKITTVDR 179          
BLAST of mRNA_H-elongata_contig135195.2485.1 vs. uniprot
Match: A0A699YYD0_HAELA (AAA_12 domain-containing protein (Fragment) n=1 Tax=Haematococcus lacustris TaxID=44745 RepID=A0A699YYD0_HAELA)

HSP 1 Score: 188 bits (477), Expect = 1.280e-56
Identity = 86/131 (65.65%), Postives = 104/131 (79.39%), Query Frame = 1
Query:    1 KLNAQGRARPEIAALYNWRYKELGNLPLVQTRPQYLTANPGFAYDYQMVDVPDFEGRGETTPTSFFYQNLGEAEYVVAVFQYMRLLGYPADRISILTTYNGQCQLIEDVVRQRCSNNELFGNPGRIATVDK 393
            +LNAQGRARP IA LYNWRY+ LG+LP V T P +L ANPGFA+DYQ ++VPDF G+GE  P  +FYQNLGEAEYVV++F +MRL+GYPA +I+ILTTYNGQ  LI DVV +RC+     G P +IATVDK
Sbjct:   26 ELNAQGRARPSIARLYNWRYRSLGDLPAVSTEPSFLAANPGFAFDYQFINVPDFLGKGELEPHPYFYQNLGEAEYVVSLFTFMRLMGYPASKITILTTYNGQKHLIRDVVERRCAAVPQLGRPHKIATVDK 156          
BLAST of mRNA_H-elongata_contig135195.2485.1 vs. uniprot
Match: A0A158QKB0_HAEPC (Uncharacterized protein n=6 Tax=Strongylida TaxID=6308 RepID=A0A158QKB0_HAEPC)

HSP 1 Score: 198 bits (503), Expect = 3.050e-56
Identity = 87/131 (66.41%), Postives = 112/131 (85.50%), Query Frame = 1
Query:    1 KLNAQGRARPEIAALYNWRYKELGNLPLVQTRPQYLTANPGFAYDYQMVDVPDFEGRGETTPTSFFYQNLGEAEYVVAVFQYMRLLGYPADRISILTTYNGQCQLIEDVVRQRCSNNELFGNPGRIATVDK 393
            +L+ QGRAR EIAALY+WRYK LGNLP V+  PQ+ TAN GFA++YQ++DVPDF G+GE+ P+ ++YQNLGEAEY VA+F YMR++GYP+D+ISI+TTYNGQ QLI DVV +RC+NN L G+P +I+TVDK
Sbjct: 1132 QLDRQGRARAEIAALYSWRYKNLGNLPHVEALPQFQTANAGFAFNYQLIDVPDFNGQGESQPSPYYYQNLGEAEYAVALFTYMRIIGYPSDKISIITTYNGQAQLIRDVVERRCANNPLIGSPAKISTVDK 1262          
BLAST of mRNA_H-elongata_contig135195.2485.1 vs. uniprot
Match: A0A2K1IRD9_PHYPA (Uncharacterized protein n=2 Tax=Physcomitrium patens TaxID=3218 RepID=A0A2K1IRD9_PHYPA)

HSP 1 Score: 197 bits (502), Expect = 4.140e-56
Identity = 91/131 (69.47%), Postives = 108/131 (82.44%), Query Frame = 1
Query:    1 KLNAQGRARPEIAALYNWRYKELGNLPLVQTRPQYLTANPGFAYDYQMVDVPDFEGRGETTPTSFFYQNLGEAEYVVAVFQYMRLLGYPADRISILTTYNGQCQLIEDVVRQRCSNNELFGNPGRIATVDK 393
            +LN+QGRARP IA LYNWRYKELG+LP V   P Y  AN GF+Y+YQ+V+V D+EG GET P  +FYQNLGEAEYVV+VF YMRLLGYPA++ISILTTYNGQ QLI DV+ ++CSNN LFG P ++ TVDK
Sbjct: 1147 QLNSQGRARPSIAKLYNWRYKELGDLPNVLQDPAYHLANAGFSYEYQLVNVEDYEGFGETEPVQYFYQNLGEAEYVVSVFMYMRLLGYPAEKISILTTYNGQKQLIRDVIARKCSNNPLFGRPSKVTTVDK 1277          
BLAST of mRNA_H-elongata_contig135195.2485.1 vs. uniprot
Match: A0A0C2GK18_9BILA (Uncharacterized protein n=2 Tax=Ancylostoma duodenale TaxID=51022 RepID=A0A0C2GK18_9BILA)

HSP 1 Score: 196 bits (498), Expect = 5.090e-56
Identity = 87/131 (66.41%), Postives = 111/131 (84.73%), Query Frame = 1
Query:    1 KLNAQGRARPEIAALYNWRYKELGNLPLVQTRPQYLTANPGFAYDYQMVDVPDFEGRGETTPTSFFYQNLGEAEYVVAVFQYMRLLGYPADRISILTTYNGQCQLIEDVVRQRCSNNELFGNPGRIATVDK 393
            +L+ QGRAR EIA LY+WRYK+LGNLP V+  PQ+ TAN GFA+++Q++DVPDF G+GE+ P+ ++YQNLGEAEY VA+F YMR+LGYPAD+ISI+TTYNGQ QLI DVV +RC+NN L G P +I+TVDK
Sbjct:  449 QLDKQGRARSEIATLYSWRYKDLGNLPHVEALPQFQTANAGFAFNFQLIDVPDFNGQGESQPSPYYYQNLGEAEYAVALFTYMRILGYPADKISIITTYNGQAQLIRDVVARRCANNPLIGAPAKISTVDK 579          
BLAST of mRNA_H-elongata_contig135195.2485.1 vs. uniprot
Match: A0A812XT32_9DINO (Aqr protein n=1 Tax=Symbiodinium necroappetens TaxID=1628268 RepID=A0A812XT32_9DINO)

HSP 1 Score: 184 bits (467), Expect = 9.870e-56
Identity = 89/130 (68.46%), Postives = 100/130 (76.92%), Query Frame = 1
Query:    4 LNAQGRARPEIAALYNWRYKELGNLPLVQTRPQYLTANPGFAYDYQMVDVPDFEGRGETTPTSFFYQNLGEAEYVVAVFQYMRLLGYPADRISILTTYNGQCQLIEDVVRQRCSNNELFGNPGRIATVDK 393
            LN QGRARP IA LY+WRYK+LGNLP V T  +Y  ANPG  Y YQ V+V DFEGRGE+ PT +FYQNLGEAEY VA+F YMRL G PA +ISIL+TYNGQ  L+ DVVR RCS N LFG P +I TVDK
Sbjct:   42 LNLQGRARPSIAELYSWRYKDLGNLPNVLTDDRYRYANPGLTYVYQFVNVEDFEGRGESQPTPYFYQNLGEAEYCVALFMYMRLCGIPAHKISILSTYNGQKALLRDVVRTRCSWNPLFGEPAKITTVDK 171          
BLAST of mRNA_H-elongata_contig135195.2485.1 vs. uniprot
Match: A0A1Y1YIH7_9FUNG (Pre-mRNA-splicing factor n=1 Tax=Basidiobolus meristosporus CBS 931.73 TaxID=1314790 RepID=A0A1Y1YIH7_9FUNG)

HSP 1 Score: 196 bits (499), Expect = 1.040e-55
Identity = 90/130 (69.23%), Postives = 108/130 (83.08%), Query Frame = 1
Query:    4 LNAQGRARPEIAALYNWRYKELGNLPLVQTRPQYLTANPGFAYDYQMVDVPDFEGRGETTPTSFFYQNLGEAEYVVAVFQYMRLLGYPADRISILTTYNGQCQLIEDVVRQRCSNNELFGNPGRIATVDK 393
            L+AQGRARP IA L+NWRYK+LGNLP+V  + +Y  AN GF YDYQ+V+V  +EG GET PT +FYQNLGEAEY VA+FQYMRLLGYPA++ISILTTYNGQ  LIEDV+R RCS N +FG P +++TVDK
Sbjct: 1049 LDAQGRARPSIAELFNWRYKKLGNLPIVAQKQEYQLANAGFTYDYQLVNVDAYEGSGETEPTKYFYQNLGEAEYAVAIFQYMRLLGYPAEKISILTTYNGQKALIEDVLRVRCSWNPMFGKPAKVSTVDK 1178          
BLAST of mRNA_H-elongata_contig135195.2485.1 vs. uniprot
Match: W2TTH5_NECAM (Uncharacterized protein n=1 Tax=Necator americanus TaxID=51031 RepID=W2TTH5_NECAM)

HSP 1 Score: 196 bits (498), Expect = 1.300e-55
Identity = 87/131 (66.41%), Postives = 111/131 (84.73%), Query Frame = 1
Query:    1 KLNAQGRARPEIAALYNWRYKELGNLPLVQTRPQYLTANPGFAYDYQMVDVPDFEGRGETTPTSFFYQNLGEAEYVVAVFQYMRLLGYPADRISILTTYNGQCQLIEDVVRQRCSNNELFGNPGRIATVDK 393
            +L+ QGRAR EIAALY+WRYK LGNLP V+  PQ+ TAN GFA++YQ++DVPDF G+GE+ P+ F+YQNLGEAEY VA+F YMR++GYPA++ISI+TTYNGQ QLI DVV +RC+NN L G P +++TVDK
Sbjct:  784 QLDKQGRARSEIAALYSWRYKNLGNLPHVEALPQFQTANAGFAFNYQLIDVPDFNGQGESQPSPFYYQNLGEAEYAVALFTYMRIIGYPAEKISIITTYNGQAQLIRDVVARRCANNPLIGVPAQVSTVDK 914          
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig135195.2485.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D7FMQ9_ECTSI2.810e-7487.79Aquarius intron-binding protein similar to aquariu... [more]
A0A368G8L0_ANCCA1.640e-5866.41Uncharacterized protein n=1 Tax=Ancylostoma caninu... [more]
A0A7S2AK93_9DINO1.540e-5767.69Hypothetical protein n=1 Tax=Alexandrium andersoni... [more]
A0A699YYD0_HAELA1.280e-5665.65AAA_12 domain-containing protein (Fragment) n=1 Ta... [more]
A0A158QKB0_HAEPC3.050e-5666.41Uncharacterized protein n=6 Tax=Strongylida TaxID=... [more]
A0A2K1IRD9_PHYPA4.140e-5669.47Uncharacterized protein n=2 Tax=Physcomitrium pate... [more]
A0A0C2GK18_9BILA5.090e-5666.41Uncharacterized protein n=2 Tax=Ancylostoma duoden... [more]
A0A812XT32_9DINO9.870e-5668.46Aqr protein n=1 Tax=Symbiodinium necroappetens Tax... [more]
A0A1Y1YIH7_9FUNG1.040e-5569.23Pre-mRNA-splicing factor n=1 Tax=Basidiobolus meri... [more]
W2TTH5_NECAM1.300e-5566.41Uncharacterized protein n=1 Tax=Necator americanus... [more]

Pages

back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig135195contigH-elongata_contig135195:268..1425 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score250.4
Seed ortholog evalue4.8e-64
Seed eggNOG ortholog2880.D7FMQ9
KEGG koko:K12874
KEGG Pathwayko03040,map03040
KEGG ModuleM00355
GOsGO:0000375,GO:0000377,GO:0000398,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005681,GO:0005684,GO:0006139,GO:0006396,GO:0006397,GO:0006725,GO:0006807,GO:0008150,GO:0008152,GO:0008380,GO:0009987,GO:0010467,GO:0016070,GO:0016071,GO:0032991,GO:0034641,GO:0043170,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0044237,GO:0044238,GO:0044422,GO:0044424,GO:0044428,GO:0044446,GO:0044464,GO:0045292,GO:0046483,GO:0071014,GO:0071704,GO:0090304,GO:1901360,GO:1990904
EggNOG free text desc.mRNA splicing, via spliceosome
EggNOG OGsKOG1806@1,KOG1806@2759
COG Functional cat.Z
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko00002,ko03041
Hectar predicted targeting categoryother localisation
Exons2
Model size396
Cds size396
Stop1
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929802.5425153-CDS-H-elongata_contig135195:267..4321622929802.5425153-CDS-H-elongata_contig135195:267..432Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig135195 268..432 +
1691679163.1522264-CDS-H-elongata_contig135195:267..4321691679163.1522264-CDS-H-elongata_contig135195:267..432Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig135195 268..432 +
1622929802.5561438-CDS-H-elongata_contig135195:1194..14251622929802.5561438-CDS-H-elongata_contig135195:1194..1425Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig135195 1195..1425 +
1691679163.1680133-CDS-H-elongata_contig135195:1194..14251691679163.1680133-CDS-H-elongata_contig135195:1194..1425Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig135195 1195..1425 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig135195.2485.1prot_H-elongata_contig135195.2485.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig135195 268..1425 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig135195.2485.1

>prot_H-elongata_contig135195.2485.1 ID=prot_H-elongata_contig135195.2485.1|Name=mRNA_H-elongata_contig135195.2485.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=132bp
KLNAQGRARPEIAALYNWRYKELGNLPLVQTRPQYLTANPGFAYDYQMVD
VPDFEGRGETTPTSFFYQNLGEAEYVVAVFQYMRLLGYPADRISILTTYN
GQCQLIEDVVRQRCSNNELFGNPGRIATVDK*
back to top

mRNA from alignment at H-elongata_contig135195:268..1425+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig135195.2485.1 ID=mRNA_H-elongata_contig135195.2485.1|Name=mRNA_H-elongata_contig135195.2485.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=1158bp|location=Sequence derived from alignment at H-elongata_contig135195:268..1425+ (Himanthalia elongata Himel1 dioecious)
AAGCTCAACGCGCAAGGCCGTGCGAGGCCGGAGATCGCCGCCCTTTACAA CTGGCGTTACAAGGAACTCGGGAACCTTCCTCTGGTGCAGACTCGGCCCC AGTATCTGACCGCGAATCCGGGCTTCGCTTACGACTACCAGATGGTGGAT GTGCCCGACTTTGAGGTGCGTGCGTGCATGCGTTTGTTTTATAATACTGT AATAAGAGCGTGTGAAGAGCTGTGAAGAAGGAAAAATATTTTACTGGGGA TTATTTTCTCCGCCCTTCGCTACCTGGGGCTGGTGCGCGTACAATTGTTT GTGTGTGGCGGGGGTTTTTTTTGGGGGGGGGGGCGGGGAGAGATAACGGA GTGTGAAAACTGCCGATTAGGGTTCTTACTGTAGACAGACGTAGGCTTGA GCTGAAAATATGCATGTTTTTGTTTTATTGATGGTTGCTTGGTTTTTGCC ATAGATAACATCCAACCTCCCTCAGTATTGAAGTGTATGCCCCTTTAGCC CCTAGGAAACTCGATCTGTTTTTTAAAACACTTGAAATCCAGTTCTAAAA GGGTTAATTAAGGCGTAATTCAAACAAAAGTTTCGAGGGTCAAAACAAAT GACAGACGCGAAAATAGCAGAAGTCTCTCCCCCCCCCCCCCCCCCCCACC CCCTTACCCCCTTTCGGCGTCATGCCCTGGTGCCCCCCCCCCCCCCCCAC ACCGCTTCCCGTGCNNNNNNNNNNTCACAATGAGTCGCGTGCAACATCCG CGCTGCGGTCTCTCCTTTCCTACAGTATCTCTGTATCCAAGAGAAGAGCG CTATTCTACACTATTACTGTCATACTCCCTCGTACGAGTTGTTGTTTTAT TTATGTATTTTGATTTATTGATTGATTGATTTCCGCTAAAAAAACACAAA ACTTTTTTCTTTTCTTTTTAATCTCAGGGCCGCGGGGAGACGACCCCCAC CTCCTTCTTTTACCAAAACCTCGGAGAGGCAGAGTACGTCGTAGCGGTTT TCCAGTACATGCGGCTGCTTGGGTACCCTGCTGACAGGATATCCATCCTC ACCACGTACAACGGGCAGTGCCAGCTGATCGAGGACGTCGTGCGCCAGCG GTGCTCTAACAACGAGCTCTTCGGGAACCCCGGCCGGATAGCAACCGTAG ACAAGTAA
back to top

Coding sequence (CDS) from alignment at H-elongata_contig135195:268..1425+

>mRNA_H-elongata_contig135195.2485.1 ID=mRNA_H-elongata_contig135195.2485.1|Name=mRNA_H-elongata_contig135195.2485.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=792bp|location=Sequence derived from alignment at H-elongata_contig135195:268..1425+ (Himanthalia elongata Himel1 dioecious)
AAGCTCAACGCGCAAGGCCGTGCGAGGCCGGAGATCGCCGCCCTTTACAA
CTGGCGTTACAAGGAACTCGGGAACCTTCCTCTGGTGCAGACTCGGCCCC
AGTATCTGACCGCGAATCCGGGCTTCGCTTACGACTACCAGATGGTGGAT
GTGCCCGACTTTGAGAAGCTCAACGCGCAAGGCCGTGCGAGGCCGGAGAT
CGCCGCCCTTTACAACTGGCGTTACAAGGAACTCGGGAACCTTCCTCTGG
TGCAGACTCGGCCCCAGTATCTGACCGCGAATCCGGGCTTCGCTTACGAC
TACCAGATGGTGGATGTGCCCGACTTTGAGGGCCGCGGGGAGACGACCCC
CACCTCCTTCTTTTACCAAAACCTCGGAGAGGCAGAGTACGTCGTAGCGG
TTTTCCAGTACATGCGGCTGCTTGGGTACCCTGCTGACAGGATATCCATC
CTCACCACGTACAACGGGCAGTGCCAGCTGATCGAGGACGTCGTGCGCCA
GCGGTGCTCTAACAACGAGCTCTTCGGGAACCCCGGCCGGATAGCAACCG
TAGACAAGTAAGGCCGCGGGGAGACGACCCCCACCTCCTTCTTTTACCAA
AACCTCGGAGAGGCAGAGTACGTCGTAGCGGTTTTCCAGTACATGCGGCT
GCTTGGGTACCCTGCTGACAGGATATCCATCCTCACCACGTACAACGGGC
AGTGCCAGCTGATCGAGGACGTCGTGCGCCAGCGGTGCTCTAACAACGAG
CTCTTCGGGAACCCCGGCCGGATAGCAACCGTAGACAAGTAA
back to top