mRNA_H-elongata_contig135096.2480.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig135096.2480.1
Unique NamemRNA_H-elongata_contig135096.2480.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig135096.2480.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig135096contigH-elongata_contig135096:453..1780 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size1330
Cds size738
Stop0
Start1
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929802.163991-UTR-H-elongata_contig135096:452..10421622929802.163991-UTR-H-elongata_contig135096:452..1042Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig135096 453..1042 +
1691679162.9984212-UTR-H-elongata_contig135096:452..10421691679162.9984212-UTR-H-elongata_contig135096:452..1042Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig135096 453..1042 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929802.1806917-CDS-H-elongata_contig135096:1042..17801622929802.1806917-CDS-H-elongata_contig135096:1042..1780Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig135096 1043..1780 +
1691679163.0077524-CDS-H-elongata_contig135096:1042..17801691679163.0077524-CDS-H-elongata_contig135096:1042..1780Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig135096 1043..1780 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig135096.2480.1prot_H-elongata_contig135096.2480.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig135096 1043..1780 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig135096.2480.1

>prot_H-elongata_contig135096.2480.1 ID=prot_H-elongata_contig135096.2480.1|Name=mRNA_H-elongata_contig135096.2480.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=246bp
MFSPALSLHASELPIARSLRTSVVGTTCFRNIDHPLQGILSAVPSIRAPG
FNVARCLKTSIGGARFLRNIDHPLQGMLSAVPLIRAPGFNVARCLKTSIG
GTRFLRNMDHALQGILSAELPFFAASLSVGWSLRTSITGTHFPLGNVNHP
PQSMLSAVLSLRASGISVVWFLRTSIADTHFLRNIDHPLQGMLSTVLPFR
AAILSVVWLFITSITGTHFLMDVNHPLQGMLSAVLRFRAASLSVVW
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mRNA from alignment at H-elongata_contig135096:453..1780+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig135096.2480.1 ID=mRNA_H-elongata_contig135096.2480.1|Name=mRNA_H-elongata_contig135096.2480.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=1328bp|location=Sequence derived from alignment at H-elongata_contig135096:453..1780+ (Himanthalia elongata Himel1 dioecious)
CCGCTTCTGTTCGCCAGTAGACCGTCAACTAAATCACTTGCAAAATATAC
CTATTTGTGTTTACTTACTGATACTTCTGACTTCACCAAAACAACATCTA
ATGAAGACTCGGAAGAGGGGGCTACAACGTTATTATCGGTTTTACATCTT
TTCGAAACGGATACTGGCGATGATGAGTTCTTTGAGACCCGCTTCTTTGA
ACTCGGACTATTGTGAGGGACGATACACGCGATGCTACCCATAACATGGT
TTGCGGAGTAATCCCGCTCTATGCTCCCGGCCTTTCCGTAGCTCGCTAGC
TTAGAACTTCCATCACCAGCGCACCTAGTTTTCGAAACATTGACAATTCC
TTCTAAGGCATGTTCAGCGCAGTACTCCCGTTTTTTGCTGCCAGCCTTAC
CGTAATTTGGTACCTTAAAGCATGCACCGCCTGCACACATTTTCCTCTTA
GTAAGGTTAATCATACCCTTTAAGTCATGCTCAACACAGTACTCTCGCTT
CGCACTTCCGGCTTTCCCGTAGCTCGCTTCCTTAGAGAATCCATCACCGG
CGCACTTTTTGTTCGAAATATTGACCATATCCTCTAAGGCATGTTCAGCC
CAGCACTTTCCCTCCATGCTTCCGAACTTCCCATAGCTCGCAGTCTTAGA
ACATCGGTCGTCGGCACAACTTGTTTTCGAAACATTGACCATCCCCTCCA
AGGCATACTCAGCGCAGTACCCTCGATTCGTGCTCCCGGTTTTAACGTAG
CTCGCTGTCTTAAAACATCCATCGGCGGCGCACGTTTTCTTCGAAACATT
GACCATCCCCTCCAAGGCATGCTCAGCGCAGTACCCTTGATTCGTGCTCC
CGGTTTTAACGTAGCTCGCTGTCTTAAAACATCCATCGGCGGCACACGTT
TTCTTCGAAACATGGACCATGCCCTCCAAGGCATCCTTAGCGCAGAACTC
CCGTTTTTTGCTGCCAGCCTTTCCGTTGGTTGGTCGCTTAGAACATCCAT
CACTGGCACACATTTTCCTCTTGGTAACGTCAATCATCCCCCCCAAAGCA
TGCTTAGCGCAGTACTCTCGCTTCGTGCTTCCGGCATTTCCGTAGTGTGG
TTCCTTAGAACATCCATCGCCGACACACATTTTCTTCGAAACATTGACCA
TCCCCTGCAAGGCATGCTTAGCACAGTACTCCCGTTTCGTGCTGCCATCC
TTTCCGTAGTGTGGTTGTTTATAACATCCATCACCGGCACACATTTTCTT
ATGGACGTCAACCATCCCCTCCAAGGCATGCTTAGCGCAGTACTCCGGTT
TCGTGCTGCCAGCCTTTCCGTAGTTTGG
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Coding sequence (CDS) from alignment at H-elongata_contig135096:453..1780+

>mRNA_H-elongata_contig135096.2480.1 ID=mRNA_H-elongata_contig135096.2480.1|Name=mRNA_H-elongata_contig135096.2480.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=1476bp|location=Sequence derived from alignment at H-elongata_contig135096:453..1780+ (Himanthalia elongata Himel1 dioecious)
ATGTTCAGCCCAGCACTTTCCCTCCATGCTTCCGAACTTCCCATAGCTCG
CAGTCTTAGAACATCGGTCGTCGGCACAACTTGTTTTCGAAACATTGACC
ATCCCCTCCAAGGCATACTCAGCGCAGTACCCTCGATTCGTGCTCCCGGT
TTTAACGTAGCTCGCTGTCTTAAAACATCCATCGGCGGCGCACGTTTTCT
TCGAAACATTGACCATCCCCTCCAAGGCATGCTCAGCGCAGTACCCTTGA
TTCGTGCTCCCGGTTTTAACGTAGCTCGCTGTCTTAAAACATCCATCGGC
GGCACACGTTTTCTTCGAAACATGGACCATGCCCTCCAAGGCATCCTTAG
CGCAGAACTCCCGTTTTTTGCTGCCAGCCTTTCCGTTGGTTGGTCGCTTA
GAACATCCATCACTGGCACACATTTTCCTCTTGGTAACGTCAATCATCCC
CCCCAAAGCATGCTTAGCGCAGTACTCTCGCTTCGTGCTTCCGGCATTTC
CGTAGTGTGGTTCCTTAGAACATCCATCGCCGACACACATTTTCTTCGAA
ACATTGACCATCCCCTGCAAGGCATGCTTAGCACAGTACTCCCGTTTCGT
GCTGCCATCCTTTCCGTAGTGTGGTTGTTTATAACATCCATCACCGGCAC
ACATTTTCTTATGGACGTCAACCATCCCCTCCAAGGCATGCTTAGCGCAG
TACTCCGGTTTCGTGCTGCCAGCCTTTCCGTAGTTTGGATGTTCAGCCCA
GCACTTTCCCTCCATGCTTCCGAACTTCCCATAGCTCGCAGTCTTAGAAC
ATCGGTCGTCGGCACAACTTGTTTTCGAAACATTGACCATCCCCTCCAAG
GCATACTCAGCGCAGTACCCTCGATTCGTGCTCCCGGTTTTAACGTAGCT
CGCTGTCTTAAAACATCCATCGGCGGCGCACGTTTTCTTCGAAACATTGA
CCATCCCCTCCAAGGCATGCTCAGCGCAGTACCCTTGATTCGTGCTCCCG
GTTTTAACGTAGCTCGCTGTCTTAAAACATCCATCGGCGGCACACGTTTT
CTTCGAAACATGGACCATGCCCTCCAAGGCATCCTTAGCGCAGAACTCCC
GTTTTTTGCTGCCAGCCTTTCCGTTGGTTGGTCGCTTAGAACATCCATCA
CTGGCACACATTTTCCTCTTGGTAACGTCAATCATCCCCCCCAAAGCATG
CTTAGCGCAGTACTCTCGCTTCGTGCTTCCGGCATTTCCGTAGTGTGGTT
CCTTAGAACATCCATCGCCGACACACATTTTCTTCGAAACATTGACCATC
CCCTGCAAGGCATGCTTAGCACAGTACTCCCGTTTCGTGCTGCCATCCTT
TCCGTAGTGTGGTTGTTTATAACATCCATCACCGGCACACATTTTCTTAT
GGACGTCAACCATCCCCTCCAAGGCATGCTTAGCGCAGTACTCCGGTTTC
GTGCTGCCAGCCTTTCCGTAGTTTGG
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