prot_H-elongata_contig13509.2479.1 (polypeptide) Himanthalia elongata Himel1 dioecious

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_H-elongata_contig13509.2479.1
Unique Nameprot_H-elongata_contig13509.2479.1
Typepolypeptide
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Sequence length87
Homology
BLAST of mRNA_H-elongata_contig13509.2479.1 vs. uniprot
Match: UPI000D0D6761 (uncharacterized protein LOC112271633 n=1 Tax=Brachypodium distachyon TaxID=15368 RepID=UPI000D0D6761)

HSP 1 Score: 57.4 bits (137), Expect = 8.480e-8
Identity = 29/73 (39.73%), Postives = 47/73 (64.38%), Query Frame = 0
Query:    2 SPADWWVTYGWIDLPDLAQIAIRTTSKVPASAGSERNWSLYGDVMGERHSRMGPERARKLVFVRANLRLQSEE 74
            +P+ WW+ +G  ++  L   AIR  S+  +S+G ERNWS +  +  E  +R+  E+  KLV+VR NL+L+SE+
Sbjct:   67 NPSSWWLMFGG-EVRILQGYAIRILSQCMSSSGCERNWSTFALMHAEAKNRLFTEKLHKLVYVRYNLKLRSEQ 138          
BLAST of mRNA_H-elongata_contig13509.2479.1 vs. uniprot
Match: A0A8N7XCG1_SPOFR (uncharacterized protein LOC118277321 isoform X1 n=5 Tax=Spodoptera frugiperda TaxID=7108 RepID=A0A8N7XCG1_SPOFR)

HSP 1 Score: 57.4 bits (137), Expect = 1.210e-7
Identity = 30/82 (36.59%), Postives = 49/82 (59.76%), Query Frame = 0
Query:    1 MSPADWWVTYGWIDLPDLAQIAIRTTSKVPASAGSERNWSLYGDVMGERHSRMGPERARKLVFVRANLRLQSEEFTKRLFVA 82
            + P  WW   G  +   L+ +A +  S  P+SA +ERNWSL+G+ +    +R+  ER +KL+ VRAN+RL S+   + ++ A
Sbjct:  530 IEPRTWW--RGLCNCQILSSVARKLLSIPPSSASTERNWSLFGNTLTRCRNRITTERLQKLITVRANIRLLSDNPNENVYFA 609          
BLAST of mRNA_H-elongata_contig13509.2479.1 vs. uniprot
Match: UPI001F5C7D3E (uncharacterized protein LOC124683127 n=1 Tax=Lolium rigidum TaxID=89674 RepID=UPI001F5C7D3E)

HSP 1 Score: 56.2 bits (134), Expect = 2.820e-7
Identity = 29/73 (39.73%), Postives = 45/73 (61.64%), Query Frame = 0
Query:    2 SPADWWVTYGWIDLPDLAQIAIRTTSKVPASAGSERNWSLYGDVMGERHSRMGPERARKLVFVRANLRLQSEE 74
             PA WW+ YG  ++  L   A R  S+  +S+G ERNWS +  +  +  +++  E+  KLV+VR NLRL++EE
Sbjct:  132 GPAHWWLLYGG-EVRILQGYAFRIVSQCMSSSGCERNWSPFALMHAQAKNQLAYEKLHKLVYVRYNLRLRTEE 203          
BLAST of mRNA_H-elongata_contig13509.2479.1 vs. uniprot
Match: A0A6S7ICX0_PARCT (Uncharacterized protein n=1 Tax=Paramuricea clavata TaxID=317549 RepID=A0A6S7ICX0_PARCT)

HSP 1 Score: 49.7 bits (117), Expect = 6.300e-5
Identity = 25/66 (37.88%), Postives = 39/66 (59.09%), Query Frame = 0
Query:    2 SPADWWVTYGWIDLPDLAQIAIRTTSKVPASAGSERNWSLYGDVMGERHSRMGPERARKLVFVRAN 67
            S   WW   G  D P L  +A R  S   +SA SER++S +G +  +  +R+GPE+ +KLV+++ N
Sbjct:  607 SVLQWWKADG-TDWPLLQDLATRVFSMAASSAASERSFSTFGFIHTKLRNRLGPEKVKKLVYIKTN 671          
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig13509.2479.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 4
Match NameE-valueIdentityDescription
UPI000D0D67618.480e-839.73uncharacterized protein LOC112271633 n=1 Tax=Brach... [more]
A0A8N7XCG1_SPOFR1.210e-736.59uncharacterized protein LOC118277321 isoform X1 n=... [more]
UPI001F5C7D3E2.820e-739.73uncharacterized protein LOC124683127 n=1 Tax=Loliu... [more]
A0A6S7ICX0_PARCT6.300e-537.88Uncharacterized protein n=1 Tax=Paramuricea clavat... [more]
back to top
InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR008906HAT, C-terminal dimerisation domainPFAMPF05699Dimer_Tnp_hATcoord: 1..68
e-value: 2.9E-5
score: 23.7
IPR012337Ribonuclease H-like superfamilySUPERFAMILY53098Ribonuclease H-likecoord: 1..71

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig13509contigH-elongata_contig13509:289..549 -
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-09-29
Diamond blastp: OGS1.0 vs UniRef902022-09-16
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig13509.2479.1mRNA_H-elongata_contig13509.2479.1Himanthalia elongata Himel1 dioeciousmRNAH-elongata_contig13509 289..549 -


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_H-elongata_contig13509.2479.1 ID=prot_H-elongata_contig13509.2479.1|Name=mRNA_H-elongata_contig13509.2479.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=87bp
MSPADWWVTYGWIDLPDLAQIAIRTTSKVPASAGSERNWSLYGDVMGERH
SRMGPERARKLVFVRANLRLQSEEFTKRLFVAWRIH*
back to top
Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR008906HATC_C_dom
IPR012337RNaseH-like_sf