mRNA_H-elongata_contig13457.2450.1 (mRNA) Himanthalia elongata Himel1 dioecious
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Overview
Homology
BLAST of mRNA_H-elongata_contig13457.2450.1 vs. uniprot
Match: A0A0C3AKI0_9AGAM (Uncharacterized protein (Fragment) n=1 Tax=Serendipita vermifera MAFF 305830 TaxID=933852 RepID=A0A0C3AKI0_9AGAM) HSP 1 Score: 82.0 bits (201), Expect = 7.640e-16 Identity = 42/108 (38.89%), Postives = 63/108 (58.33%), Query Frame = 2
Query: 20 SIRMVLWIIMILNWEAQQVDVDMTYLEANVEEEIYIELPEGYRDSKKQVGLLKKVMYGFVHAGLLWWKPFGVKLGAKGFERSQADPCVFRRVLPGKVIAILVIYVDGL 343
++R + + I +WE +Q+D+ YL +EEEI++E PEG+ D +V LK +YG AG +W K +L GF R+ ADPCV+ GK I IL ++VD +
Sbjct: 947 AVRACIALSAIKDWEMRQIDIKGAYLNGELEEEIFMEQPEGFNDGSGRVCRLKLPLYGLKQAGRMWNKKLNAQLTTLGFNRTNADPCVYYNNQDGK-ITILTVWVDDI 1053
BLAST of mRNA_H-elongata_contig13457.2450.1 vs. uniprot
Match: A0A2H6NG14_MICLE (Reverse transcriptase Ty1/copia-type domain-containing protein (Fragment) n=2 Tax=Micrurus lemniscatus carvalhoi TaxID=129465 RepID=A0A2H6NG14_MICLE) HSP 1 Score: 76.3 bits (186), Expect = 1.450e-15 Identity = 44/114 (38.60%), Postives = 62/114 (54.39%), Query Frame = 2
Query: 2 PTPAQLSIRMVLWIIMILNWEAQQVDVDMTYLEANVEEEIYIELPEGYRDSKKQVGLLKKVMYGFVHAGLLWWKPFGVKLGAKGFERSQADPCVFRRVLPGKVIAILVIYVDGL 343
PT S+++ L ILN + Q DV+ YL A+++EEIYI P G+RD + L K +YG +GL+W+ KL + GF +S D CVF + ILV YVD +
Sbjct: 5 PTVRNESVKIALTTATILNLKVLQFDVETAYLHADLDEEIYIRGPPGFRDREGDTWFLNKSLYGLKQSGLMWYLCLKDKLNSMGFIKSDTDECVFTKRSKNSYEIILV-YVDDI 117
BLAST of mRNA_H-elongata_contig13457.2450.1 vs. uniprot
Match: A0A151THM1_CAJCA (Retrovirus-related Pol polyprotein from transposon TNT 1-94 n=1 Tax=Cajanus cajan TaxID=3821 RepID=A0A151THM1_CAJCA) HSP 1 Score: 80.9 bits (198), Expect = 1.940e-15 Identity = 43/116 (37.07%), Postives = 69/116 (59.48%), Query Frame = 2
Query: 2 PTPAQLSIRMVLWIIMILNWEAQQVDVDMTYLEANVEEEIYIELPEGYRDSKKQ--VGLLKKVMYGFVHAGLLWWKPFGVKLGAKGFERSQADPCVFRRVLPGKVIAILVIYVDGL 343
P SIR++L ++ ++ E +Q+DV +L +++EEIY+E PEG+ K+ V LKK +YG A W+K F + ++GF+R+ ADPCV+ P IL++YVD +
Sbjct: 894 PVVKMCSIRVILGLVASMDLELEQLDVKTAFLHGDLDEEIYMEQPEGFEVKGKEDMVCKLKKSLYGLKQAPRQWYKKFDSFIKSQGFKRTDADPCVYINRYPNGKFLILLLYVDDM 1009
BLAST of mRNA_H-elongata_contig13457.2450.1 vs. uniprot
Match: A0A2P6Q6P3_ROSCH (Putative RNA-directed DNA polymerase n=1 Tax=Rosa chinensis TaxID=74649 RepID=A0A2P6Q6P3_ROSCH) HSP 1 Score: 80.5 bits (197), Expect = 2.390e-15 Identity = 44/116 (37.93%), Postives = 68/116 (58.62%), Query Frame = 2
Query: 2 PTPAQLSIRMVLWIIMILNWEAQQVDVDMTYLEANVEEEIYIELPEGYRDSKKQ--VGLLKKVMYGFVHAGLLWWKPFGVKLGAKGFERSQADPCVFRRVLPGKVIAILVIYVDGL 343
P SIR++L + ++ E +Q+DV +L ++EEEIY+E PEG+ +KQ V LKK +YG A W+K F + G++R+ ADPCV+ + G IL++YVD +
Sbjct: 68 PVVKMTSIRIILGMAASMDLEVEQLDVKTAFLHGDLEEEIYMEQPEGFEVERKQHMVCKLKKSLYGLKQAPRQWYKKFDSFMVGHGYKRTDADPCVYLQRFTGGNFIILLLYVDDM 183
BLAST of mRNA_H-elongata_contig13457.2450.1 vs. uniprot
Match: A0A401GXA0_9APHY (Reverse transcriptase Ty1/copia-type domain-containing protein n=1 Tax=Sparassis crispa TaxID=139825 RepID=A0A401GXA0_9APHY) HSP 1 Score: 77.4 bits (189), Expect = 5.050e-15 Identity = 41/108 (37.96%), Postives = 64/108 (59.26%), Query Frame = 2
Query: 20 SIRMVLWIIMILNWEAQQVDVDMTYLEANVEEEIYIELPEGYRDSKKQVGLLKKVMYGFVHAGLLWWKPFGVKLGAKGFERSQADPCVFRRVLPGKVIAILVIYVDGL 343
SIR +L + ++ NWE Q+DV YL +++EEIY+ PEG+ D V L K +YG +G W + KL G+++ +ADPCV+ + G+V I+ ++VD L
Sbjct: 64 SIRAILALAVVNNWEIGQMDVKGAYLNGDLQEEIYMRQPEGFNDGSGHVCRLHKTLYGLKQSGHKWNRKLHRKLTELGYKQLEADPCVYLQEQKGEV-QIITVWVDDL 170
BLAST of mRNA_H-elongata_contig13457.2450.1 vs. uniprot
Match: A0A2P6SP23_ROSCH (Putative RNA-directed DNA polymerase n=1 Tax=Rosa chinensis TaxID=74649 RepID=A0A2P6SP23_ROSCH) HSP 1 Score: 79.0 bits (193), Expect = 9.170e-15 Identity = 44/116 (37.93%), Postives = 67/116 (57.76%), Query Frame = 2
Query: 2 PTPAQLSIRMVLWIIMILNWEAQQVDVDMTYLEANVEEEIYIELPEGYRDSKKQ--VGLLKKVMYGFVHAGLLWWKPFGVKLGAKGFERSQADPCVFRRVLPGKVIAILVIYVDGL 343
P SIR++L + ++ E +Q+DV +L ++EEEIY+E PEG+ KQ V LKK +YG A W+K F + G++R+ ADPCV+ + G IL++YVD +
Sbjct: 907 PVVKMTSIRIILGMAASMDLEVEQLDVKTAFLHGDLEEEIYMEQPEGFEVEGKQHMVCKLKKSLYGLKQAPRQWYKKFDSFMVGHGYKRTDADPCVYLQRFTGGNFIILLLYVDDM 1022
BLAST of mRNA_H-elongata_contig13457.2450.1 vs. uniprot
Match: A0A6H5J7P7_9PHAE (Reverse transcriptase Ty1/copia-type domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5J7P7_9PHAE) HSP 1 Score: 78.6 bits (192), Expect = 1.160e-14 Identity = 39/112 (34.82%), Postives = 64/112 (57.14%), Query Frame = 2
Query: 8 PAQLSIRMVLWIIMILNWEAQQVDVDMTYLEANVEEEIYIELPEGYRDSKKQVGLLKKVMYGFVHAGLLWWKPFGVKLGAKGFERSQADPCVFRRVLPGKVIAILVIYVDGL 343
P+ SI+ V+ + + Q DV Y+ A ++EEIY+ PEG +V +++ +YG +G WW L G+E+ + DPCVFR+V+ G+V+ ++VIYVD +
Sbjct: 233 PSAASIKTVIAVATEKGKKLAQWDVKQAYIHAKLKEEIYLRFPEGCGSMSGKVVKVERALYGLKQSGREWWFEAADALIENGYEQCRVDPCVFRKVVDGEVVGLIVIYVDDI 344
BLAST of mRNA_H-elongata_contig13457.2450.1 vs. uniprot
Match: A0A6N2MP88_SALVM (Reverse transcriptase Ty1/copia-type domain-containing protein n=1 Tax=Salix viminalis TaxID=40686 RepID=A0A6N2MP88_SALVM) HSP 1 Score: 78.2 bits (191), Expect = 1.670e-14 Identity = 45/116 (38.79%), Postives = 65/116 (56.03%), Query Frame = 2
Query: 2 PTPAQLSIRMVLWIIMILNWEAQQVDVDMTYLEANVEEEIYIELPEGYRDSKKQ--VGLLKKVMYGFVHAGLLWWKPFGVKLGAKGFERSQADPCVFRRVLPGKVIAILVIYVDGL 343
P SIR+VL I LN E +QVDV +L +++EEIY+E PEG+ K+ V LK+ +YG A W+K F + GF+R+ +D CVF + P IL++YV +
Sbjct: 464 PVVKMSSIRVVLGIAASLNLEVEQVDVKTVFLHGDLDEEIYMEQPEGFEAKSKEQLVCKLKRSLYGLEQAPRQWYKKFDSFMEGHGFDRTTSDHCVFMKRFPDGNFIILLLYVGDM 579
BLAST of mRNA_H-elongata_contig13457.2450.1 vs. uniprot
Match: UPI001EFFA561 (DDE-type integrase/transposase/recombinase n=1 Tax=Corynebacterium parakroppenstedtii TaxID=2828363 RepID=UPI001EFFA561) HSP 1 Score: 78.2 bits (191), Expect = 1.690e-14 Identity = 44/116 (37.93%), Postives = 67/116 (57.76%), Query Frame = 2
Query: 2 PTPAQLSIRMVLWIIMILNWEAQQVDVDMTYLEANVEEEIYIELPEGYRDSKKQ--VGLLKKVMYGFVHAGLLWWKPFGVKLGAKGFERSQADPCVFRRVLPGKVIAILVIYVDGL 343
P SIR VL + LN E +Q+DV +L ++EEEIY+E PEG++ K+ V LKK +YG A W+K F +G +G++++ +D CVF + IL++YVD +
Sbjct: 661 PVVKMSSIRTVLGLAASLNLEIEQMDVKTAFLHGDLEEEIYMEQPEGFKVKGKENFVCKLKKSLYGLKQAPRQWYKKFEFVMGEQGYKKTSSDHCVFVQKFSDNDFIILLLYVDDM 776
BLAST of mRNA_H-elongata_contig13457.2450.1 vs. uniprot
Match: UPI001F2C2DB3 (hypothetical protein n=1 Tax=Corynebacterium pseudokroppenstedtii TaxID=2804917 RepID=UPI001F2C2DB3) HSP 1 Score: 77.8 bits (190), Expect = 1.870e-14 Identity = 44/116 (37.93%), Postives = 67/116 (57.76%), Query Frame = 2
Query: 2 PTPAQLSIRMVLWIIMILNWEAQQVDVDMTYLEANVEEEIYIELPEGYRDSKKQ--VGLLKKVMYGFVHAGLLWWKPFGVKLGAKGFERSQADPCVFRRVLPGKVIAILVIYVDGL 343
P SIR VL + LN E +Q+DV +L ++EEEIY+E PEG++ K+ V LKK +YG A W+K F +G +G++++ +D CVF + IL++YVD +
Sbjct: 80 PVVKMSSIRTVLGLAASLNLEIEQMDVKTAFLHGDLEEEIYMEQPEGFKVKGKENFVCKLKKSLYGLKQAPRQWYKKFESVMGEQGYKKTSSDHCVFVQKFSDNDFIILLLYVDDM 195 The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig13457.2450.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_H-elongata_contig13457.2450.1 >prot_H-elongata_contig13457.2450.1 ID=prot_H-elongata_contig13457.2450.1|Name=mRNA_H-elongata_contig13457.2450.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=115bp PDPSAVEYQDGSLDYYDSQLGGTTGRRRYDLPRSQRGRRNIHRTSGRVPRback to top mRNA from alignment at H-elongata_contig13457:3263..3608+ Legend: CDSpolypeptide Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_H-elongata_contig13457.2450.1 ID=mRNA_H-elongata_contig13457.2450.1|Name=mRNA_H-elongata_contig13457.2450.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=346bp|location=Sequence derived from alignment at H-elongata_contig13457:3263..3608+ (Himanthalia elongata Himel1 dioecious)back to top Coding sequence (CDS) from alignment at H-elongata_contig13457:3263..3608+ >mRNA_H-elongata_contig13457.2450.1 ID=mRNA_H-elongata_contig13457.2450.1|Name=mRNA_H-elongata_contig13457.2450.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=690bp|location=Sequence derived from alignment at H-elongata_contig13457:3263..3608+ (Himanthalia elongata Himel1 dioecious)back to top |