mRNA_H-elongata_contig134523.2448.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig134523.2448.1
Unique NamemRNA_H-elongata_contig134523.2448.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
BLAST of mRNA_H-elongata_contig134523.2448.1 vs. uniprot
Match: A0A6H5JJA1_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JJA1_9PHAE)

HSP 1 Score: 172 bits (435), Expect = 1.940e-49
Identity = 87/149 (58.39%), Postives = 110/149 (73.83%), Query Frame = 1
Query:    1 MLEDKTFKGCFRMEYDDFNVLVDLLRTELERDANKMGGLRNGAIPVEYQIALTLRWLAGGSIYEGMDGHVIARTTAYEIAYHLIHAINACSDLECKCPDNLDDVTEVATGVRDRSSSGVIEKCIGAMNGLFIRMKIPSRRDTAEPNNYY 447
            ML+D TF   FRMEYDDF VLVD LR  L+++  K G LRNGAIPVEYQ+A+TLRWLAGGSIYE MDGHVIAR+TAY +   +I+A+NAC +L CK P+  +D+ E  +     +   V+ KC+GAM+GLF+RM  PS ++ AEPN YY
Sbjct:   64 MLQDHTFSMRFRMEYDDFRVLVDHLRPALQQN-EKTGLLRNGAIPVEYQVAMTLRWLAGGSIYEYMDGHVIARSTAYHVTSTVINALNACPELNCKWPEG-EDLPEPPSFSATAALMDVVRKCVGAMDGLFVRMIKPSAKEVAEPNLYY 210          
BLAST of mRNA_H-elongata_contig134523.2448.1 vs. uniprot
Match: A0A6H5JVS8_9PHAE (DDE Tnp4 domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JVS8_9PHAE)

HSP 1 Score: 164 bits (414), Expect = 6.280e-47
Identity = 84/149 (56.38%), Postives = 104/149 (69.80%), Query Frame = 1
Query:    1 MLEDKTFKGCFRMEYDDFNVLVDLLRTELERDANKMGGLRNGAIPVEYQIALTLRWLAGGSIYEGMDGHVIARTTAYEIAYHLIHAINACSDLECKCPDNLDDVTEVATGVRDRSSSGVIEKCIGAMNGLFIRMKIPSRRDTAEPNNYY 447
            +L+D TF   FRMEYDDF VL+D LR  L ++  KMG LR GAIPVEYQIA+TLRWLAGGSIYE MDGHVIAR+TAY +   +I+A+NAC +L CK P+               +   V+ KC+GAM+GLF+RM  PS ++ AEPN YY
Sbjct:   64 LLQDHTFSVRFRMEYDDFRVLIDHLRPALHKN-EKMGLLRIGAIPVEYQIAMTLRWLAGGSIYECMDGHVIARSTAYHVTSTVINALNACPELNCKWPE---------------ARMDVVRKCVGAMDGLFVRMIKPSAKEVAEPNLYY 196          
BLAST of mRNA_H-elongata_contig134523.2448.1 vs. uniprot
Match: A0A6H5K6M2_9PHAE (DDE Tnp4 domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K6M2_9PHAE)

HSP 1 Score: 154 bits (389), Expect = 2.330e-42
Identity = 79/149 (53.02%), Postives = 106/149 (71.14%), Query Frame = 1
Query:    1 MLEDKTFKGCFRMEYDDFNVLVDLLRTELERDANKMGGLRNGAIPVEYQIALTLRWLAGGSIYEGMDGHVIARTTAYEIAYHLIHAINACSDLECKCPDNLDDVTEVATGVRDRSSSGVIEKCIGAMNGLFIRMKIPSRRDTAEPNNYY 447
            M+ED TF+  FRM+Y DF  L D+LR +L+RD  KMG LRNGAIPVE+Q+A+TLR+LAGGS++E MD +VIA++TAY I + +I AIN    L CK P   DD    A   R RS++GVI +C+GAM+GLF+R+  P  +  A P ++Y
Sbjct:   64 MVEDNTFRKRFRMDYTDFMTLADILRPKLQRD-EKMGALRNGAIPVEFQLAMTLRFLAGGSVFEVMDSNVIAKSTAYAIVHRVIDAINQTRQLNCKWPYG-DDAEAQAELYRRRSTNGVIRRCVGAMDGLFVRLIPPCLKRHAVPGSFY 210          
BLAST of mRNA_H-elongata_contig134523.2448.1 vs. uniprot
Match: A0A6H5K3F2_9PHAE (DDE Tnp4 domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K3F2_9PHAE)

HSP 1 Score: 150 bits (379), Expect = 6.060e-41
Identity = 75/149 (50.34%), Postives = 107/149 (71.81%), Query Frame = 1
Query:    1 MLEDKTFKGCFRMEYDDFNVLVDLLRTELERDANKMGGLRNGAIPVEYQIALTLRWLAGGSIYEGMDGHVIARTTAYEIAYHLIHAINACSDLECKCPDNLDDVTEVATGVRDRSSSGVIEKCIGAMNGLFIRMKIPSRRDTAEPNNYY 447
            M++D TF+  FRM+Y +F +L D+LR +LER+  +MG LRNG IPVE+Q+A+ LR+LAGGS++E MDG+VIAR+TAY I + +I AIN   +L+C  P+  +D  +     R RS++GVI  C+GAM+GLF+RM  PS R    P ++Y
Sbjct:   60 MVQDGTFRLRFRMDYTEFALLADMLRPKLERN-ERMGALRNGVIPVEFQLAMALRFLAGGSVFEVMDGNVIARSTAYAIVHRVIDAINQTRELDCVWPEG-EDALDQCGMYRRRSTNGVIRMCVGAMDGLFVRMTQPSLRRHVNPRSFY 206          
BLAST of mRNA_H-elongata_contig134523.2448.1 vs. uniprot
Match: A0A6H5L6B6_9PHAE (DDE Tnp4 domain-containing protein n=3 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L6B6_9PHAE)

HSP 1 Score: 149 bits (376), Expect = 1.640e-40
Identity = 76/130 (58.46%), Postives = 97/130 (74.62%), Query Frame = 1
Query:   58 VLVDLLRTELERDANKMGGLRNGAIPVEYQIALTLRWLAGGSIYEGMDGHVIARTTAYEIAYHLIHAINACSDLECKCPDNLDDVTEVATGVRDRSSSGVIEKCIGAMNGLFIRMKIPSRRDTAEPNNYY 447
            VLVD LR  L+++  +MG LRNGAIPVE Q+A+TLRWLAGGSIYE MDGHVIAR+TAY +   +I+A+NAC +L CK P+  +D    A   R+RSS  V+ KC+GA +GLF+RM  PS ++ AEPN YY
Sbjct:   72 VLVDHLRPALQKN-QQMGLLRNGAIPVEDQVAMTLRWLAGGSIYECMDGHVIARSTAYHVTSTVINALNACPELNCKWPEG-EDAARAAELFRNRSSMDVVRKCVGATDGLFVRMIKPSAKEVAEPNLYY 199          
BLAST of mRNA_H-elongata_contig134523.2448.1 vs. uniprot
Match: A0A6H5KD49_9PHAE (Uncharacterized protein n=2 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KD49_9PHAE)

HSP 1 Score: 140 bits (352), Expect = 5.160e-40
Identity = 69/114 (60.53%), Postives = 86/114 (75.44%), Query Frame = 1
Query:  106 MGGLRNGAIPVEYQIALTLRWLAGGSIYEGMDGHVIARTTAYEIAYHLIHAINACSDLECKCPDNLDDVTEVATGVRDRSSSGVIEKCIGAMNGLFIRMKIPSRRDTAEPNNYY 447
            MG LRNGAIPVE Q+A+TLRWLAGGSIYE MDGHVIAR+TAY +   +I+A+NAC +L CK P+  +D    A   R+RSS  V+ KC+GAM+ LF+RM  PS ++ AEPN YY
Sbjct:    1 MGLLRNGAIPVEDQVAMTLRWLAGGSIYECMDGHVIARSTAYHVTSTVINALNACPELNCKWPEG-EDAARAAELFRNRSSMDVVRKCVGAMDVLFVRMIKPSAKEVAEPNLYY 113          
BLAST of mRNA_H-elongata_contig134523.2448.1 vs. uniprot
Match: A0A6H5K540_9PHAE (DDE Tnp4 domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K540_9PHAE)

HSP 1 Score: 115 bits (288), Expect = 3.360e-28
Identity = 66/121 (54.55%), Postives = 79/121 (65.29%), Query Frame = 1
Query:    1 MLEDKTFKGCFRMEYDDFNVLVDLLRTELERDANKMGGLRNGAIPVEYQIALTLRWLAGGSIYEGMDGHVIARTTAYEIAYHLIHAINACSDLECKCPDNLDDVTEVATGVRDRSSSGVIE 363
            ML+D TF   FRMEYDDF VLVD LR  L+++  KMG LRNGAIPVEYQ+A+TLRWLAGGS YE MDGHVIAR+TAY       + I A       CP + +D T       D+  +G+ E
Sbjct:   64 MLQDHTFSMRFRMEYDDFRVLVDHLRPALQKN-EKMGLLRNGAIPVEYQVAMTLRWLAGGSTYECMDGHVIARSTAYHAVCDAQYRIMAWM---MNCPGSQNDRTAFNFSGFDKLLAGLPE 180          
BLAST of mRNA_H-elongata_contig134523.2448.1 vs. uniprot
Match: A0A6H5J9B3_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5J9B3_9PHAE)

HSP 1 Score: 106 bits (264), Expect = 1.140e-26
Identity = 53/83 (63.86%), Postives = 64/83 (77.11%), Query Frame = 1
Query:  106 MGGLRNGAIPVEYQIALTLRWLAGGSIYEGMDGHVIARTTAYEIAYHLIHAINACSDLECKCPDNLDDVTEVATGVRDRSSSG 354
            MG LRNGAIPVEYQ+A+TLRWLAGGSIYE MDGHVIAR+TAY +   +I+A+NAC +L CK P+  +D    A   R+RSS G
Sbjct:    1 MGLLRNGAIPVEYQVAMTLRWLAGGSIYECMDGHVIARSTAYHVTSTVINALNACPELNCKWPEG-EDAAGAAELFRNRSSYG 82          
BLAST of mRNA_H-elongata_contig134523.2448.1 vs. uniprot
Match: A0A6A3LHP3_9STRA (DDE Tnp4 domain-containing protein n=1 Tax=Phytophthora rubi TaxID=129364 RepID=A0A6A3LHP3_9STRA)

HSP 1 Score: 83.6 bits (205), Expect = 1.940e-16
Identity = 45/148 (30.41%), Postives = 78/148 (52.70%), Query Frame = 1
Query:   10 DKTFKGCFRMEYDDFNVLVDLLRTELERDANKMGGLRNGAIPVEYQIAL--TLRWLAGGSIYEGMDGHVIARTTAYEIAYHLIHAINACSDLECKCPDNLDDVTEVATGVRDRSSSGVIEKCIGAMNGLFIRMKIPSRRDTAEPNNYY 447
            ++ F   +RM    F  LV++LR+ L  D  +M  +R G  P+  ++ L  TLRWLAGGS  +      ++  + Y   +  + AI +C  L  + P    D+ + AT     S+ GV + C+G ++G+ +R+K PS ++T    +Y+
Sbjct:   59 ERRFGRYYRMNEAAFEQLVEMLRSRLVVDG-RMSTVRTGEAPISPEVVLHCTLRWLAGGSYLDVCGSGHLSVPSFYRCIHKGVSAIVSCPALGMRLPTTASDIEKAATSFTTCSTEGVFDGCVGCIDGMLVRIKTPSTKETRNVRSYF 205          
BLAST of mRNA_H-elongata_contig134523.2448.1 vs. uniprot
Match: A0A6H5JYU2_9PHAE (Integrase catalytic domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JYU2_9PHAE)

HSP 1 Score: 83.6 bits (205), Expect = 7.370e-16
Identity = 40/81 (49.38%), Postives = 55/81 (67.90%), Query Frame = 1
Query:  196 MDGHVIARTTAYEIAYHLIHAINACSDLECKCPDNLDDVTEVATGVRDRSSSGVIEKCIGAMNGLFIRMKIPSRRDTAEPN 438
            MD HVIAR+TAY     +I+A+NACS++ CK P+  +D    A   R+RSS  V+ KC+GAM+G F+RM  PS ++  EPN
Sbjct:    1 MDDHVIARSTAYHETSTVINALNACSEVNCKWPEG-EDAARAAELFRNRSSIDVVRKCVGAMDGFFVRMIKPSAKEVVEPN 80          
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig134523.2448.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 19
Match NameE-valueIdentityDescription
A0A6H5JJA1_9PHAE1.940e-4958.39Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5JVS8_9PHAE6.280e-4756.38DDE Tnp4 domain-containing protein n=1 Tax=Ectocar... [more]
A0A6H5K6M2_9PHAE2.330e-4253.02DDE Tnp4 domain-containing protein n=1 Tax=Ectocar... [more]
A0A6H5K3F2_9PHAE6.060e-4150.34DDE Tnp4 domain-containing protein n=1 Tax=Ectocar... [more]
A0A6H5L6B6_9PHAE1.640e-4058.46DDE Tnp4 domain-containing protein n=3 Tax=Ectocar... [more]
A0A6H5KD49_9PHAE5.160e-4060.53Uncharacterized protein n=2 Tax=Ectocarpus sp. CCA... [more]
A0A6H5K540_9PHAE3.360e-2854.55DDE Tnp4 domain-containing protein n=1 Tax=Ectocar... [more]
A0A6H5J9B3_9PHAE1.140e-2663.86Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6A3LHP3_9STRA1.940e-1630.41DDE Tnp4 domain-containing protein n=1 Tax=Phytoph... [more]
A0A6H5JYU2_9PHAE7.370e-1649.38Integrase catalytic domain-containing protein n=1 ... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig134523contigH-elongata_contig134523:680..1126 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score71.2
Seed ortholog evalue4.5e-10
Seed eggNOG ortholog159749.K0QZI6
EggNOG free text desc.DDE superfamily endonuclease
EggNOG OGs2E3PU@1,2SAQU@2759
COG Functional cat.S
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Hectar predicted targeting categoryother localisation
Exons1
Model size447
Cds size447
Stop0
Start1
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929799.0858061-CDS-H-elongata_contig134523:679..11261622929799.0858061-CDS-H-elongata_contig134523:679..1126Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig134523 680..1126 +
1691679161.9425058-CDS-H-elongata_contig134523:679..11261691679161.9425058-CDS-H-elongata_contig134523:679..1126Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig134523 680..1126 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig134523.2448.1prot_H-elongata_contig134523.2448.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig134523 680..1126 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig134523.2448.1

>prot_H-elongata_contig134523.2448.1 ID=prot_H-elongata_contig134523.2448.1|Name=mRNA_H-elongata_contig134523.2448.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=149bp
MLEDKTFKGCFRMEYDDFNVLVDLLRTELERDANKMGGLRNGAIPVEYQI
ALTLRWLAGGSIYEGMDGHVIARTTAYEIAYHLIHAINACSDLECKCPDN
LDDVTEVATGVRDRSSSGVIEKCIGAMNGLFIRMKIPSRRDTAEPNNYY
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mRNA from alignment at H-elongata_contig134523:680..1126+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig134523.2448.1 ID=mRNA_H-elongata_contig134523.2448.1|Name=mRNA_H-elongata_contig134523.2448.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=447bp|location=Sequence derived from alignment at H-elongata_contig134523:680..1126+ (Himanthalia elongata Himel1 dioecious)
ATGCTCGAAGACAAAACGTTCAAGGGATGCTTCCGCATGGAGTATGATGA CTTCAACGTCCTTGTAGATCTCCTTCGCACGGAACTCGAGAGAGACGCTA ATAAGATGGGAGGTCTAAGAAATGGCGCAATACCTGTGGAATATCAGATA GCCCTAACATTGCGGTGGTTGGCAGGTGGCTCAATATACGAGGGTATGGA TGGACACGTAATCGCAAGGACCACGGCGTATGAGATCGCGTACCACCTCA TCCACGCTATCAATGCATGTTCCGACCTGGAATGCAAATGCCCCGACAAT TTGGATGATGTTACGGAGGTCGCGACGGGCGTTAGGGACCGCAGTTCAAG TGGTGTAATCGAAAAGTGTATTGGGGCAATGAATGGGTTGTTCATACGCA TGAAAATACCTTCCCGGAGAGATACCGCCGAGCCGAACAACTACTAC
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Coding sequence (CDS) from alignment at H-elongata_contig134523:680..1126+

>mRNA_H-elongata_contig134523.2448.1 ID=mRNA_H-elongata_contig134523.2448.1|Name=mRNA_H-elongata_contig134523.2448.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=894bp|location=Sequence derived from alignment at H-elongata_contig134523:680..1126+ (Himanthalia elongata Himel1 dioecious)
ATGCTCGAAGACAAAACGTTCAAGGGATGCTTCCGCATGGAGTATGATGA
CTTCAACGTCCTTGTAGATCTCCTTCGCACGGAACTCGAGAGAGACGCTA
ATAAGATGGGAGGTCTAAGAAATGGCGCAATACCTGTGGAATATCAGATA
GCCCTAACATTGCGGTGGTTGGCAGGTGGCTCAATATACGAGGGTATGGA
TGGACACGTAATCGCAAGGACCACGGCGTATGAGATCGCGTACCACCTCA
TCCACGCTATCAATGCATGTTCCGACCTGGAATGCAAATGCCCCGACAAT
TTGGATGATGTTACGGAGGTCGCGACGGGCGTTAGGGACCGCAGTTCAAG
TGGTGTAATCGAAAAGTGTATTGGGGCAATGAATGGGTTGTTCATACGCA
TGAAAATACCTTCCCGGAGAGATACCGCCGAGCCGAACAACTACTACATG
CTCGAAGACAAAACGTTCAAGGGATGCTTCCGCATGGAGTATGATGACTT
CAACGTCCTTGTAGATCTCCTTCGCACGGAACTCGAGAGAGACGCTAATA
AGATGGGAGGTCTAAGAAATGGCGCAATACCTGTGGAATATCAGATAGCC
CTAACATTGCGGTGGTTGGCAGGTGGCTCAATATACGAGGGTATGGATGG
ACACGTAATCGCAAGGACCACGGCGTATGAGATCGCGTACCACCTCATCC
ACGCTATCAATGCATGTTCCGACCTGGAATGCAAATGCCCCGACAATTTG
GATGATGTTACGGAGGTCGCGACGGGCGTTAGGGACCGCAGTTCAAGTGG
TGTAATCGAAAAGTGTATTGGGGCAATGAATGGGTTGTTCATACGCATGA
AAATACCTTCCCGGAGAGATACCGCCGAGCCGAACAACTACTAC
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