mRNA_H-elongata_contig134465.2445.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig134465.2445.1
Unique NamemRNA_H-elongata_contig134465.2445.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
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BLAST of mRNA_H-elongata_contig134465.2445.1 vs. uniprot
Match: D7G4V9_ECTSI (MORN repeat-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G4V9_ECTSI)

HSP 1 Score: 95.9 bits (237), Expect = 1.600e-21
Identity = 44/65 (67.69%), Postives = 53/65 (81.54%), Query Frame = 1 
Query:    1 SFQVTYEGWWNFGFICGHGILTMPDGTSVVRSWPSQNRSLGGGLSLRGAFELARHDQEMARLDRL 195
            + +VTYEGWW  GFI GHG LTMPDGT +VRSWP+Q+R  GGGLSLRGA EL  +++E ARLD+L
Sbjct:  256 NLKVTYEGWWVDGFIRGHGTLTMPDGTKLVRSWPAQSR-FGGGLSLRGALELVLYEREQARLDKL 319
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig134465.2445.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
D7G4V9_ECTSI1.600e-2167.69MORN repeat-containing protein n=1 Tax=Ectocarpus ... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig134465contigH-elongata_contig134465:51..583 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score94.4
Seed ortholog evalue2.8e-17
Seed eggNOG ortholog2880.D7G4V9
EggNOG free text desc.Translation initiation factor IF-2, N-terminal region
EggNOG OGsCOG5253@1,KOG0229@2759
COG Functional cat.T
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Hectar predicted targeting categoryother localisation
Exons2
Model size258
Cds size258
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929798.8769548-CDS-H-elongata_contig134465:50..1661622929798.8769548-CDS-H-elongata_contig134465:50..166Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig134465 51..166 +
1691679161.8830385-CDS-H-elongata_contig134465:50..1661691679161.8830385-CDS-H-elongata_contig134465:50..166Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig134465 51..166 +
1622929798.8926516-CDS-H-elongata_contig134465:441..5831622929798.8926516-CDS-H-elongata_contig134465:441..583Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig134465 442..583 +
1691679161.8918576-CDS-H-elongata_contig134465:441..5831691679161.8918576-CDS-H-elongata_contig134465:441..583Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig134465 442..583 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig134465.2445.1prot_H-elongata_contig134465.2445.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig134465 51..583 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig134465.2445.1

>prot_H-elongata_contig134465.2445.1 ID=prot_H-elongata_contig134465.2445.1|Name=mRNA_H-elongata_contig134465.2445.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=86bp
SFQVTYEGWWNFGFICGHGILTMPDGTSVVRSWPSQNRSLGGGLSLRGAF
ELARHDQEMARLDRLHRHEVRHPYTARPAFRFHENS
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mRNA from alignment at H-elongata_contig134465:51..583+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig134465.2445.1 ID=mRNA_H-elongata_contig134465.2445.1|Name=mRNA_H-elongata_contig134465.2445.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=533bp|location=Sequence derived from alignment at H-elongata_contig134465:51..583+ (Himanthalia elongata Himel1 dioecious)
TCATTTCAGGTAACGTACGAAGGTTGGTGGAACTTTGGCTTCATATGCGG
CCACGGCATTCTCACCATGCCAGACGGGACCAGCGTGGTCCGCTCGTGGC
CCAGCCAAAACAGGTCGTTTAATATTAGGCCATTAGAGTTTCGAGGTATG
GGGACATGCACACGAAAAAAGTCATCTAAATGTATGCCATTCGAATCCCG
TCGAGCAGAGTAGCGCCATCCAGTGAAGACTCGATAAATAAGCAGAACTT
CACGGCATAGGACATCATTTACCTGTGGTATTGCAACGCTCTTTAAATAT
GGCATACTAATATAAACATGCATGACAGGATCCTCGTATTTGAACGACAC
AAGTGATTCGACCGCAGTATTTTGTCAATGTATTTCGCTAGATTGGGTGG
TGGACTATCGCTCAGAGGTGCTTTTGAGCTAGCGCGACACGATCAAGAGA
TGGCTCGGCTGGACAGACTTCATAGACATGAGGTACGTCACCCTTACACA
GCGAGACCAGCCTTTCGTTTTCACGAAAATTCA
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Coding sequence (CDS) from alignment at H-elongata_contig134465:51..583+

>mRNA_H-elongata_contig134465.2445.1 ID=mRNA_H-elongata_contig134465.2445.1|Name=mRNA_H-elongata_contig134465.2445.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=516bp|location=Sequence derived from alignment at H-elongata_contig134465:51..583+ (Himanthalia elongata Himel1 dioecious)
TCATTTCAGGTAACGTACGAAGGTTGGTGGAACTTTGGCTTCATATGCGG
CCACGGCATTCTCACCATGCCAGACGGGACCAGCGTGGTCCGCTCGTGGC
CCAGCCAAAACAGGTCTCATTTCAGGTAACGTACGAAGGTTGGTGGAACT
TTGGCTTCATATGCGGCCACGGCATTCTCACCATGCCAGACGGGACCAGC
GTGGTCCGCTCGTGGCCCAGCCAAAACAGGTCATTGGGTGGTGGACTATC
GCTCAGAGGTGCTTTTGAGCTAGCGCGACACGATCAAGAGATGGCTCGGC
TGGACAGACTTCATAGACATGAGGTACGTCACCCTTACACAGCGAGACCA
GCCTTTCGTTTTCACGAAAATTCAATTGGGTGGTGGACTATCGCTCAGAG
GTGCTTTTGAGCTAGCGCGACACGATCAAGAGATGGCTCGGCTGGACAGA
CTTCATAGACATGAGGTACGTCACCCTTACACAGCGAGACCAGCCTTTCG
TTTTCACGAAAATTCA
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