mRNA_H-elongata_contig134427.2442.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig134427.2442.1
Unique NamemRNA_H-elongata_contig134427.2442.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
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BLAST of mRNA_H-elongata_contig134427.2442.1 vs. uniprot
Match: A0A6H5JYC8_9PHAE (SAM domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JYC8_9PHAE)

HSP 1 Score: 94.7 bits (234), Expect = 2.280e-21
Identity = 44/51 (86.27%), Postives = 49/51 (96.08%), Query Frame = 1 
Query:   13 LVDSWLEGIGLGYAVPIFSGQGINTPDMLSELDVVDFPELGISNHNDRKKV 165
            LVDSWL GIGLGYAVPIF+GQGI++PDMLSELDVVDFPELGIS+ NDRKK+
Sbjct:    4 LVDSWLNGIGLGYAVPIFAGQGIDSPDMLSELDVVDFPELGISDQNDRKKL 54
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BLAST of mRNA_H-elongata_contig134427.2442.1 vs. uniprot
Match: A0A836CN55_9STRA (SAM domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CN55_9STRA)

HSP 1 Score: 63.2 bits (152), Expect = 5.420e-12
Identity = 28/53 (52.83%), Postives = 38/53 (71.70%), Query Frame = 1 
Query:    7 MGLVDSWLEGIGLGYAVPIFSGQGINTPDMLSELDVVDFPELGISNHNDRKKV 165
            M LV++WL GIGLGYA+P F  QG+  P+ LS L + +F  LG++N  DRKK+
Sbjct:    1 MVLVETWLSGIGLGYAIPTFKAQGVIVPEKLSRLSLDEFEGLGVTNTEDRKKL 53
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BLAST of mRNA_H-elongata_contig134427.2442.1 vs. uniprot
Match: A0A7S1ZZ94_9STRA (Hypothetical protein (Fragment) n=1 Tax=Ditylum brightwellii TaxID=49249 RepID=A0A7S1ZZ94_9STRA)

HSP 1 Score: 60.5 bits (145), Expect = 3.100e-10
Identity = 27/54 (50.00%), Postives = 40/54 (74.07%), Query Frame = 1 
Query:    4 SMGLVDSWLEGIGLGYAVPIFSGQGINTPDMLSELDVVDFPELGISNHNDRKKV 165
            +MGLV +WL GIGLG+A+P F   GI TP  L+EL++  + +LG+ + N+RKK+
Sbjct:   75 NMGLVTTWLNGIGLGHAIPAFRAAGIVTPTDLAELELHMYEDLGVKSSNERKKL 128
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BLAST of mRNA_H-elongata_contig134427.2442.1 vs. uniprot
Match: A0A448Z7E2_9STRA (Uncharacterized protein n=1 Tax=Pseudo-nitzschia multistriata TaxID=183589 RepID=A0A448Z7E2_9STRA)

HSP 1 Score: 60.8 bits (146), Expect = 1.990e-9
Identity = 28/53 (52.83%), Postives = 37/53 (69.81%), Query Frame = 1 
Query:    7 MGLVDSWLEGIGLGYAVPIFSGQGINTPDMLSELDVVDFPELGISNHNDRKKV 165
            MGLV +WL GIGLG  VP F   GI +P  L++LDV  F  LG++N +DR+K+
Sbjct:    1 MGLVSTWLNGIGLGSVVPTFEAAGIVSPSHLADLDVAYFESLGVTNPDDRRKL 53
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BLAST of mRNA_H-elongata_contig134427.2442.1 vs. uniprot
Match: A0A1Z5KT23_FISSO (Kinesin-like protein n=2 Tax=Fistulifera solaris TaxID=1519565 RepID=A0A1Z5KT23_FISSO)

HSP 1 Score: 60.1 bits (144), Expect = 3.720e-9
Identity = 28/53 (52.83%), Postives = 36/53 (67.92%), Query Frame = 1 
Query:    7 MGLVDSWLEGIGLGYAVPIFSGQGINTPDMLSELDVVDFPELGISNHNDRKKV 165
            MGLV +WL GIGL YAVP F   GI+ P  L++LDV  F  LG+ +  DR+K+
Sbjct:    1 MGLVATWLNGIGLSYAVPTFHAAGIDNPAALAQLDVSHFEALGVKDGEDRRKL 53
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BLAST of mRNA_H-elongata_contig134427.2442.1 vs. uniprot
Match: D8LAW3_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LAW3_ECTSI)

HSP 1 Score: 54.7 bits (130), Expect = 2.960e-7
Identity = 25/30 (83.33%), Postives = 29/30 (96.67%), Query Frame = 1 
Query:   76 GINTPDMLSELDVVDFPELGISNHNDRKKV 165
            GI++PDMLSELDVVDFPELGIS+ NDRKK+
Sbjct:   56 GIDSPDMLSELDVVDFPELGISDQNDRKKL 85
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig134427.2442.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 6
Match NameE-valueIdentityDescription
A0A6H5JYC8_9PHAE2.280e-2186.27SAM domain-containing protein n=1 Tax=Ectocarpus s... [more]
A0A836CN55_9STRA5.420e-1252.83SAM domain-containing protein n=1 Tax=Tribonema mi... [more]
A0A7S1ZZ94_9STRA3.100e-1050.00Hypothetical protein (Fragment) n=1 Tax=Ditylum br... [more]
A0A448Z7E2_9STRA1.990e-952.83Uncharacterized protein n=1 Tax=Pseudo-nitzschia m... [more]
A0A1Z5KT23_FISSO3.720e-952.83Kinesin-like protein n=2 Tax=Fistulifera solaris T... [more]
D8LAW3_ECTSI2.960e-783.33Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig134427contigH-elongata_contig134427:370..534 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryno signal peptide or anchor
Ec32 ortholog descriptionexpressed unknown protein
Ec32 orthologEc-27_006200.2
Exons1
Model size165
Cds size159
Stop0
Start1
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929798.7045372-UTR-H-elongata_contig134427:369..3751622929798.7045372-UTR-H-elongata_contig134427:369..375Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig134427 370..375 +
1691679161.825533-UTR-H-elongata_contig134427:369..3751691679161.825533-UTR-H-elongata_contig134427:369..375Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig134427 370..375 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929798.7193484-CDS-H-elongata_contig134427:375..5341622929798.7193484-CDS-H-elongata_contig134427:375..534Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig134427 376..534 +
1691679161.8349888-CDS-H-elongata_contig134427:375..5341691679161.8349888-CDS-H-elongata_contig134427:375..534Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig134427 376..534 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig134427.2442.1prot_H-elongata_contig134427.2442.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig134427 376..534 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig134427.2442.1

>prot_H-elongata_contig134427.2442.1 ID=prot_H-elongata_contig134427.2442.1|Name=mRNA_H-elongata_contig134427.2442.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=53bp
MGLVDSWLEGIGLGYAVPIFSGQGINTPDMLSELDVVDFPELGISNHNDR
KKV
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mRNA from alignment at H-elongata_contig134427:370..534+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig134427.2442.1 ID=mRNA_H-elongata_contig134427.2442.1|Name=mRNA_H-elongata_contig134427.2442.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=165bp|location=Sequence derived from alignment at H-elongata_contig134427:370..534+ (Himanthalia elongata Himel1 dioecious)
CGAAGTATGGGTCTGGTGGACAGCTGGCTAGAGGGCATCGGTCTGGGCTA
TGCGGTGCCTATATTTTCAGGACAAGGGATCAATACGCCGGACATGCTGT
CCGAGCTGGACGTGGTTGACTTTCCGGAGCTGGGAATCTCGAACCACAAT
GATCGCAAAAAGGTA
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Coding sequence (CDS) from alignment at H-elongata_contig134427:370..534+

>mRNA_H-elongata_contig134427.2442.1 ID=mRNA_H-elongata_contig134427.2442.1|Name=mRNA_H-elongata_contig134427.2442.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=318bp|location=Sequence derived from alignment at H-elongata_contig134427:370..534+ (Himanthalia elongata Himel1 dioecious)
ATGGGTCTGGTGGACAGCTGGCTAGAGGGCATCGGTCTGGGCTATGCGGT
GCCTATATTTTCAGGACAAGGGATCAATACGCCGGACATGCTGTCCGAGC
TGGACGTGGTTGACTTTCCGGAGCTGGGAATCTCGAACCACAATGATCGC
AAAAAGGTAATGGGTCTGGTGGACAGCTGGCTAGAGGGCATCGGTCTGGG
CTATGCGGTGCCTATATTTTCAGGACAAGGGATCAATACGCCGGACATGC
TGTCCGAGCTGGACGTGGTTGACTTTCCGGAGCTGGGAATCTCGAACCAC
AATGATCGCAAAAAGGTA
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