prot_H-elongata_contig134402.2441.1 (polypeptide) Himanthalia elongata Himel1 dioecious

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_H-elongata_contig134402.2441.1
Unique Nameprot_H-elongata_contig134402.2441.1
Typepolypeptide
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Sequence length156
Homology
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BLAST of mRNA_H-elongata_contig134402.2441.1 vs. uniprot
Match: D8LHX3_ECTSI (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D8LHX3_ECTSI)

HSP 1 Score: 211 bits (536), Expect = 1.850e-63
Identity = 113/166 (68.07%), Postives = 122/166 (73.49%), Query Frame = 0 
Query:    1 LFNECWEETANQD------YCPTRAWTFTGPDLAFQLGIFQAGVFLLMTLYMFWKAPTVEGVLDGSMDTKGVQLAPRVVEVEMVVGKALATDGDPDYDSENTLYNGAATMIRPYPLPKTAKAAQVPEEVAVEEAGAGA--------GSSTASSDFEAKDDPEIQED 152
            LF+ECW ETA+ D      +CP R WTFTGP L   LGIFQ G+FLLMTLYM WKAPTVEGVLDGSMD  GV L PRVVEVEMVVGKALATDGDPDYDSEN LYNGAATMIRPYPLPK+AKAA+                      GS TASSD+EAKDDPE+Q+D
Sbjct:  251 LFDECWGETADDDAAGLQTFCPVRPWTFTGPGLPMMLGIFQVGLFLLMTLYMVWKAPTVEGVLDGSMDPTGVVLKPRVVEVEMVVGKALATDGDPDYDSENPLYNGAATMIRPYPLPKSAKAAKAXXXXXXXXXXXXXXXXXXXXXGSDTASSDYEAKDDPEMQDD 416
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig134402.2441.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
D8LHX3_ECTSI1.850e-6368.07Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2... [more]
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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availablePHOBIUSCYTOPLASMIC_DOMAINCytoplasmic domaincoord: 49..155
NoneNo IPR availablePHOBIUSTRANSMEMBRANETransmembrane regioncoord: 27..48
NoneNo IPR availablePHOBIUSNON_CYTOPLASMIC_DOMAINNon cytoplasmic domaincoord: 1..26
NoneNo IPR availableTMHMMTMhelixcoord: 26..48

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig134402contigH-elongata_contig134402:1209..1676 +
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-09-29
Diamond blastp: OGS1.0 vs UniRef902022-09-16
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig134402.2441.1mRNA_H-elongata_contig134402.2441.1Himanthalia elongata Himel1 dioeciousmRNAH-elongata_contig134402 1209..1676 +


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_H-elongata_contig134402.2441.1 ID=prot_H-elongata_contig134402.2441.1|Name=mRNA_H-elongata_contig134402.2441.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=156bp
LFNECWEETANQDYCPTRAWTFTGPDLAFQLGIFQAGVFLLMTLYMFWKA
PTVEGVLDGSMDTKGVQLAPRVVEVEMVVGKALATDGDPDYDSENTLYNG
AATMIRPYPLPKTAKAAQVPEEVAVEEAGAGAGSSTASSDFEAKDDPEIQ
EDTLA*
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