mRNA_H-elongata_contig134402.2441.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig134402.2441.1
Unique NamemRNA_H-elongata_contig134402.2441.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
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BLAST of mRNA_H-elongata_contig134402.2441.1 vs. uniprot
Match: D8LHX3_ECTSI (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D8LHX3_ECTSI)

HSP 1 Score: 211 bits (536), Expect = 1.850e-63
Identity = 113/166 (68.07%), Postives = 122/166 (73.49%), Query Frame = 1 
Query:    1 LFNECWEETANQD------YCPTRAWTFTGPDLAFQLGIFQAGVFLLMTLYMFWKAPTVEGVLDGSMDTKGVQLAPRVVEVEMVVGKALATDGDPDYDSENTLYNGAATMIRPYPLPKTAKAAQVPEEVAVEEAGAGA--------GSSTASSDFEAKDDPEIQED 456
            LF+ECW ETA+ D      +CP R WTFTGP L   LGIFQ G+FLLMTLYM WKAPTVEGVLDGSMD  GV L PRVVEVEMVVGKALATDGDPDYDSEN LYNGAATMIRPYPLPK+AKAA+                      GS TASSD+EAKDDPE+Q+D
Sbjct:  251 LFDECWGETADDDAAGLQTFCPVRPWTFTGPGLPMMLGIFQVGLFLLMTLYMVWKAPTVEGVLDGSMDPTGVVLKPRVVEVEMVVGKALATDGDPDYDSENPLYNGAATMIRPYPLPKSAKAAKAXXXXXXXXXXXXXXXXXXXXXGSDTASSDYEAKDDPEMQDD 416
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig134402.2441.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
D8LHX3_ECTSI1.850e-6368.07Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig134402contigH-elongata_contig134402:1209..1676 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Ec32 ortholog descriptionexpressed unknown protein
Ec32 orthologEc-18_000830.1
Exons1
Model size468
Cds size468
Stop1
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929798.6384351-CDS-H-elongata_contig134402:1208..16761622929798.6384351-CDS-H-elongata_contig134402:1208..1676Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig134402 1209..1676 +
1691679161.8158712-CDS-H-elongata_contig134402:1208..16761691679161.8158712-CDS-H-elongata_contig134402:1208..1676Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig134402 1209..1676 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig134402.2441.1prot_H-elongata_contig134402.2441.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig134402 1209..1676 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig134402.2441.1

>prot_H-elongata_contig134402.2441.1 ID=prot_H-elongata_contig134402.2441.1|Name=mRNA_H-elongata_contig134402.2441.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=156bp
LFNECWEETANQDYCPTRAWTFTGPDLAFQLGIFQAGVFLLMTLYMFWKA
PTVEGVLDGSMDTKGVQLAPRVVEVEMVVGKALATDGDPDYDSENTLYNG
AATMIRPYPLPKTAKAAQVPEEVAVEEAGAGAGSSTASSDFEAKDDPEIQ
EDTLA*
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mRNA from alignment at H-elongata_contig134402:1209..1676+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig134402.2441.1 ID=mRNA_H-elongata_contig134402.2441.1|Name=mRNA_H-elongata_contig134402.2441.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=468bp|location=Sequence derived from alignment at H-elongata_contig134402:1209..1676+ (Himanthalia elongata Himel1 dioecious)
CTCTTCAACGAGTGCTGGGAGGAGACTGCCAACCAAGACTACTGCCCAAC
GAGGGCGTGGACCTTTACCGGTCCCGACTTGGCTTTCCAGCTTGGTATCT
TCCAGGCGGGGGTGTTCCTCCTTATGACGCTCTACATGTTCTGGAAGGCA
CCCACCGTGGAAGGCGTGCTCGACGGTTCTATGGACACCAAGGGTGTCCA
GCTCGCGCCCCGCGTGGTTGAGGTGGAGATGGTGGTCGGGAAGGCTCTCG
CTACCGATGGAGACCCGGACTACGATTCGGAGAATACTCTCTACAATGGT
GCGGCGACCATGATCAGACCGTACCCGCTCCCGAAGACTGCCAAAGCCGC
ACAGGTTCCGGAGGAGGTGGCTGTCGAAGAAGCAGGTGCCGGAGCCGGCA
GCAGCACGGCATCGAGCGATTTCGAAGCCAAGGATGACCCCGAGATTCAA
GAGGATACGCTAGCGTAA
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Coding sequence (CDS) from alignment at H-elongata_contig134402:1209..1676+

>mRNA_H-elongata_contig134402.2441.1 ID=mRNA_H-elongata_contig134402.2441.1|Name=mRNA_H-elongata_contig134402.2441.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=936bp|location=Sequence derived from alignment at H-elongata_contig134402:1209..1676+ (Himanthalia elongata Himel1 dioecious)
CTCTTCAACGAGTGCTGGGAGGAGACTGCCAACCAAGACTACTGCCCAAC
GAGGGCGTGGACCTTTACCGGTCCCGACTTGGCTTTCCAGCTTGGTATCT
TCCAGGCGGGGGTGTTCCTCCTTATGACGCTCTACATGTTCTGGAAGGCA
CCCACCGTGGAAGGCGTGCTCGACGGTTCTATGGACACCAAGGGTGTCCA
GCTCGCGCCCCGCGTGGTTGAGGTGGAGATGGTGGTCGGGAAGGCTCTCG
CTACCGATGGAGACCCGGACTACGATTCGGAGAATACTCTCTACAATGGT
GCGGCGACCATGATCAGACCGTACCCGCTCCCGAAGACTGCCAAAGCCGC
ACAGGTTCCGGAGGAGGTGGCTGTCGAAGAAGCAGGTGCCGGAGCCGGCA
GCAGCACGGCATCGAGCGATTTCGAAGCCAAGGATGACCCCGAGATTCAA
GAGGATACGCTAGCGTAACTCTTCAACGAGTGCTGGGAGGAGACTGCCAA
CCAAGACTACTGCCCAACGAGGGCGTGGACCTTTACCGGTCCCGACTTGG
CTTTCCAGCTTGGTATCTTCCAGGCGGGGGTGTTCCTCCTTATGACGCTC
TACATGTTCTGGAAGGCACCCACCGTGGAAGGCGTGCTCGACGGTTCTAT
GGACACCAAGGGTGTCCAGCTCGCGCCCCGCGTGGTTGAGGTGGAGATGG
TGGTCGGGAAGGCTCTCGCTACCGATGGAGACCCGGACTACGATTCGGAG
AATACTCTCTACAATGGTGCGGCGACCATGATCAGACCGTACCCGCTCCC
GAAGACTGCCAAAGCCGCACAGGTTCCGGAGGAGGTGGCTGTCGAAGAAG
CAGGTGCCGGAGCCGGCAGCAGCACGGCATCGAGCGATTTCGAAGCCAAG
GATGACCCCGAGATTCAAGAGGATACGCTAGCGTAA
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