mRNA_H-elongata_contig134347.2438.1 (mRNA) Himanthalia elongata Himel1 dioecious
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Overview
Homology
BLAST of mRNA_H-elongata_contig134347.2438.1 vs. uniprot
Match: D7G5T9_ECTSI (ABC transporter ATP-binding protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G5T9_ECTSI) HSP 1 Score: 359 bits (922), Expect = 4.240e-118 Identity = 179/210 (85.24%), Postives = 189/210 (90.00%), Query Frame = 1
Query: 1 QSTLLNMIARLDTPDMGELIVGETVDVMYVDQNREGLDDPELSVFQAVTDGAEEITLGPRTINSRAYLSWFNFKGGDQQKKINLLSGGERNRLNLARTLKQARRLTFSFPKDRRPAQGGNLLLLDEPTNDLDVETLRALEEAIDAFPGCAVIVSHDRYFLDKIATHTLAFEDDGGVVWFEGSFAEYEEDLRHRNGGNEPKRPKFRPLPTV 630
+STLLNMIA LDTPDMG+L+VGETVDVMYVDQNREGLDDPELSVF AVTDGA+EITLGPRTINSRAYLSWFNFKGGDQQKK+NLLSGGERNRLNLARTLKQ GGNLLLLDEPTNDLDV+TLRALE+AIDA+PGCAVIVSHDRYFLDK+ATHTLAFEDDGGVVWFEGSFAEYE+DLR R GGNEPKRPKFRPLP V
Sbjct: 490 KSTLLNMIAGLDTPDMGKLVVGETVDVMYVDQNREGLDDPELSVFDAVTDGADEITLGPRTINSRAYLSWFNFKGGDQQKKVNLLSGGERNRLNLARTLKQ----------------GGNLLLLDEPTNDLDVDTLRALEDAIDAYPGCAVIVSHDRYFLDKVATHTLAFEDDGGVVWFEGSFAEYEQDLRRRAGGNEPKRPKFRPLPAV 683
BLAST of mRNA_H-elongata_contig134347.2438.1 vs. uniprot
Match: A0A7S2V3L5_9STRA (Hypothetical protein n=1 Tax=Fibrocapsa japonica TaxID=94617 RepID=A0A7S2V3L5_9STRA) HSP 1 Score: 282 bits (722), Expect = 3.190e-94 Identity = 143/210 (68.10%), Postives = 163/210 (77.62%), Query Frame = 1
Query: 1 QSTLLNMIARLDTPDMGELIVGETVDVMYVDQNREGLDDPELSVFQAVTDGAEEITLGPRTINSRAYLSWFNFKGGDQQKKINLLSGGERNRLNLARTLKQARRLTFSFPKDRRPAQGGNLLLLDEPTNDLDVETLRALEEAIDAFPGCAVIVSHDRYFLDKIATHTLAFEDDGGVVWFEGSFAEYEEDLRHRNGGNEPKRPKFRPLPTV 630
+STLL MIA +DTP +GEL VG TV VMY DQNR GL+DPEL+VF AV +GA+EI LG RT+N+RAYL FNFK QQKK++ LSGGERNRLNLARTLK GGNLLLLDEPTNDLDV+TLRALEEAI+ F GC V+VSHDR+FLD+IATH LAFEDDG VVWFEG+ AEYE DL+ RNGG P RPK+RPLP +
Sbjct: 9 KSTLLKMIAGMDTPSLGELKVGPTVKVMYADQNRAGLEDPELTVFDAVAEGAQEIDLGKRTLNARAYLGQFNFKSSSQQKKVSNLSGGERNRLNLARTLKL----------------GGNLLLLDEPTNDLDVDTLRALEEAIEEFVGCVVVVSHDRWFLDRIATHILAFEDDGNVVWFEGNHAEYEADLKRRNGGVAPTRPKYRPLPAI 202
BLAST of mRNA_H-elongata_contig134347.2438.1 vs. uniprot
Match: W7U335_9STRA (Abc transporter atp-binding protein n=2 Tax=Monodopsidaceae TaxID=425072 RepID=W7U335_9STRA) HSP 1 Score: 286 bits (731), Expect = 9.230e-90 Identity = 141/210 (67.14%), Postives = 164/210 (78.10%), Query Frame = 1
Query: 1 QSTLLNMIARLDTPDMGELIVGETVDVMYVDQNREGLDDPELSVFQAVTDGAEEITLGPRTINSRAYLSWFNFKGGDQQKKINLLSGGERNRLNLARTLKQARRLTFSFPKDRRPAQGGNLLLLDEPTNDLDVETLRALEEAIDAFPGCAVIVSHDRYFLDKIATHTLAFEDDGGVVWFEGSFAEYEEDLRHRNGGNEPKRPKFRPLPTV 630
+STL +IA L+ PD G L +G+TV VMYVDQNRE + DP +V+ V DGAE+I LG R +NSRAYL WFNFKG DQQK + +LSGGERNRL LA+TLKQ GGNLLLLDEPTNDLDV+TLRALE+AI+A+ GCAVI+SHDRYFLD++ATH LAFEDDG VVWFEG F+EY+ DL+ RNGG EPKRPKFRPLPTV
Sbjct: 471 KSTLFKLIAGLEAPDQGALSLGDTVKVMYVDQNREAVADPTKTVYDTVADGAEQIELGKRVVNSRAYLGWFNFKGADQQKPVGVLSGGERNRLCLAQTLKQ----------------GGNLLLLDEPTNDLDVDTLRALEDAIEAYAGCAVIISHDRYFLDRVATHILAFEDDGNVVWFEGDFSEYQRDLQARNGGVEPKRPKFRPLPTV 664
BLAST of mRNA_H-elongata_contig134347.2438.1 vs. uniprot
Match: A0A835Z1K8_9STRA (ABC transporter ATP-binding protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835Z1K8_9STRA) HSP 1 Score: 284 bits (726), Expect = 1.210e-89 Identity = 143/210 (68.10%), Postives = 162/210 (77.14%), Query Frame = 1
Query: 1 QSTLLNMIARLDTPDMGELIVGETVDVMYVDQNREGLDDPELSVFQAVTDGAEEITLGPRTINSRAYLSWFNFKGGDQQKKINLLSGGERNRLNLARTLKQARRLTFSFPKDRRPAQGGNLLLLDEPTNDLDVETLRALEEAIDAFPGCAVIVSHDRYFLDKIATHTLAFEDDGGVVWFEGSFAEYEEDLRHRNGGNEPKRPKFRPLPTV 630
+STLL MIA PD G L VGE+V MYVDQNREGLDDP L+VFQA+TDGA+EI LG R +NSRAY +FNFKG DQQK +NLLSGGERNRLNLARTLKQ GGN+L+LDEPTNDLD TLRALE+AI F GCA+IVSHDRYFLD+++TH LAFEDDG WFEG+F EYE DL+ RNGG EPKRPKFRP+P +
Sbjct: 410 KSTLLKMIAGQLQPDEGTLTVGESVQCMYVDQNREGLDDPNLTVFQAITDGADEIDLGTRKVNSRAYCGFFNFKGIDQQKTVNLLSGGERNRLNLARTLKQ----------------GGNVLMLDEPTNDLDHFTLRALEDAIQGFSGCAIIVSHDRYFLDRLSTHILAFEDDGTTTWFEGNFGEYEADLKRRNGGAEPKRPKFRPMPVL 603
BLAST of mRNA_H-elongata_contig134347.2438.1 vs. uniprot
Match: A0A7S2ZT64_9RHOD (Probable ATP-dependent transporter ycf16 n=8 Tax=Rhodosorus marinus TaxID=101924 RepID=A0A7S2ZT64_9RHOD) HSP 1 Score: 247 bits (631), Expect = 3.280e-75 Identity = 124/210 (59.05%), Postives = 157/210 (74.76%), Query Frame = 1
Query: 1 QSTLLNMIARLDTPDMGELIVGETVDVMYVDQNREGLDDPELSVFQAVTDGAEEITLGPRTINSRAYLSWFNFKGGDQQKKINLLSGGERNRLNLARTLKQARRLTFSFPKDRRPAQGGNLLLLDEPTNDLDVETLRALEEAIDAFPGCAVIVSHDRYFLDKIATHTLAFEDDGGVVWFEGSFAEYEEDLRHRNGGNEPKRPKFRPLPTV 630
+STL M+ +++ PD G L +GE+V+ MYVDQ+REGLD E +VF+ VT+ +EITLG RT+NSRAYL WFNFKG DQQKK+ LSGGERNR+NLA+ LKQ GGN+LLLDEPTNDLDV+TLRALEEA+ F GCA+++SHDR+FLD++ATH LAFE D V WF+G+++EYE+D R G EP R KFRP+P +
Sbjct: 442 KSTLFKMLMQMEEPDGGSLKIGESVNFMYVDQSREGLD-AEKTVFEEVTNNDDEITLGTRTVNSRAYLGWFNFKGADQQKKVVNLSGGERNRINLAKVLKQ----------------GGNVLLLDEPTNDLDVDTLRALEEAVLDFGGCAMVISHDRWFLDRVATHILAFEGDSEVRWFDGNYSEYEQDRVKRLGSVEPTRVKFRPIPAI 634
BLAST of mRNA_H-elongata_contig134347.2438.1 vs. uniprot
Match: A0A061S0P1_9CHLO (Heme abc transporter atp-binding protein (Fragment) n=1 Tax=Tetraselmis sp. GSL018 TaxID=582737 RepID=A0A061S0P1_9CHLO) HSP 1 Score: 230 bits (587), Expect = 1.300e-72 Identity = 121/208 (58.17%), Postives = 151/208 (72.60%), Query Frame = 1
Query: 1 QSTLLNMIARLDTPDMGELIVGETVDVMYVDQNREGLDDPELSVFQAVTDGAEEITLGP-RTINSRAYLSWFNFKGGDQQKKINLLSGGERNRLNLARTLKQARRLTFSFPKDRRPAQGGNLLLLDEPTNDLDVETLRALEEAIDAFPGCAVIVSHDRYFLDKIATHTLAFEDDGGVVWFEGSFAEYEEDLRHRNGGNEPKRPKFRPL 621
+STL MI + PD G + +GETV MYVDQ+RE LD + +VF+AV DG EEI LG R+IN+RAYLSW+NF G DQQKK+ +LSGGERNRL+LA L+++ GNLLLLDEPTNDLDV+TLRALEEA+D F G ++I+SHDR+FLD++ATH LA+E D VVWFEG ++EYEED + R G +P R KFR L
Sbjct: 91 KSTLFRMIMGEEQPDSGSISIGETVVPMYVDQSRESLDSDK-TVFEAVGDGDEEIQLGHGRSINTRAYLSWYNFTGSDQQKKVGVLSGGERNRLHLATVLRKS----------------GNLLLLDEPTNDLDVDTLRALEEAVDNFAGTSLIISHDRWFLDRLATHILAYEGDSSVVWFEGGYSEYEEDRKQRTGVEDPTRVKFRRL 281
BLAST of mRNA_H-elongata_contig134347.2438.1 vs. uniprot
Match: A0A7S3BJW3_9VIRI (Hypothetical protein n=1 Tax=Prasinoderma singulare TaxID=676789 RepID=A0A7S3BJW3_9VIRI) HSP 1 Score: 229 bits (584), Expect = 2.890e-72 Identity = 115/210 (54.76%), Postives = 150/210 (71.43%), Query Frame = 1
Query: 1 QSTLLNMIARLDTPDMGELIVGETVDVMYVDQNREGLDDPELSVFQAVTDGAEEITLGPRTINSRAYLSWFNFKGGDQQKKINLLSGGERNRLNLARTLKQARRLTFSFPKDRRPAQGGNLLLLDEPTNDLDVETLRALEEAIDAFPGCAVIVSHDRYFLDKIATHTLAFEDDGGVVWFEGSFAEYEEDLRHRNGGNEPKRPKFRPLPTV 630
+STL MI ++ PD G + VG+TV VMYVDQ+RE LDD +L+V++ ++DG E + +G R ++SRAY SWFNFKG Q K++ LSGGERNRL LAR L R P GNLLLLDEPTNDLD +TLRALE A+ F G ++VSHDRYFLD++ATH LA+EDDG +V+ EG+F++Y DL+ RNGG +P R K+R +P +
Sbjct: 80 KSTLFRMITGVEQPDAGSIKVGDTVKVMYVDQSREELDDDKLTVYEMLSDGVETLDIGGREVSSRAYCSWFNFKGSTQSKRVADLSGGERNRLQLARAL-------------RTP---GNLLLLDEPTNDLDTDTLRALEGAVLGFAGSVMVVSHDRYFLDRVATHILAYEDDGSIVFREGNFSDYARDLKKRNGGADPTRVKYRKMPAL 273
BLAST of mRNA_H-elongata_contig134347.2438.1 vs. uniprot
Match: A0A7S0ICF9_MICPS (Hypothetical protein n=1 Tax=Micromonas pusilla TaxID=38833 RepID=A0A7S0ICF9_MICPS) HSP 1 Score: 231 bits (589), Expect = 9.510e-72 Identity = 115/210 (54.76%), Postives = 152/210 (72.38%), Query Frame = 1
Query: 1 QSTLLNMIARLDTPDMGELIVGETVDVMYVDQNREGLDDPELSVFQAVTDGAEEITLGPRTINSRAYLSWFNFKGGDQQKKINLLSGGERNRLNLARTLKQARRLTFSFPKDRRPAQGGNLLLLDEPTNDLDVETLRALEEAIDAFPGCAVIVSHDRYFLDKIATHTLAFEDDGGVVWFEGSFAEYEEDLRHRNGGNEPKRPKFRPLPTV 630
++TL MI +D PD GE++VGETV +MYVDQ+R+ L+D + +VF+ ++ GAEEI+LG RT+N+RAY SW+NFK DQQKK+ LSGGERNRL LA+TL GGN+L+LDEPTNDLDV TLRALEEAI ++ G + +SHDR+FL+KI TH +A+E D V +F+GS+ EYEE + R GG EP R K+RP+P +
Sbjct: 179 KTTLFKMITGIDEPDKGEVVVGETVKLMYVDQSRDSLNDDK-TVFEELSGGAEEISLGTRTVNARAYCSWYNFKSSDQQKKVGQLSGGERNRLQLAKTL----------------TSGGNVLMLDEPTNDLDVTTLRALEEAITSWNGVTMCISHDRWFLNKICTHIMAYEGDSQVTFFQGSYDEYEEHRKERMGGGEPTRIKYRPMPAM 371
BLAST of mRNA_H-elongata_contig134347.2438.1 vs. uniprot
Match: A0A2K1L300_PHYPA (Uncharacterized protein n=1 Tax=Physcomitrium patens TaxID=3218 RepID=A0A2K1L300_PHYPA) HSP 1 Score: 238 bits (606), Expect = 2.660e-71 Identity = 122/207 (58.94%), Postives = 148/207 (71.50%), Query Frame = 1
Query: 1 QSTLLNMIARLDTPDMGELIVGETVDVMYVDQNREGLDDPELSVFQAVTDGAEEITLGPRTINSRAYLSWFNFKGGDQQKKINLLSGGERNRLNLARTLKQARRLTFSFPKDRRPAQGGNLLLLDEPTNDLDVETLRALEEAIDAFPGCAVIVSHDRYFLDKIATHTLAFEDDGGVVWFEGSFAEYEEDLRHRNGGNEPKRPKFRPL 621
+STL MI D+PD GEL VGETV +Y+DQ+RE LD PE SVF+ +TDG EEI +G R +N RAY SWFNFK GDQQKK+ +LSGGERNRL LA+ +K+ GNLLLLDEPTNDLDV+TLRALE+AI F GCAV++SHDR+FLD++ATH LAFE D V +++GS+ EYE D R R G EP R K+ L
Sbjct: 471 KSTLFKMILGQDSPDGGELRVGETVAPLYIDQSRESLD-PEKSVFEEITDGQEEIFIGERKVNGRAYCSWFNFKSGDQQKKVGMLSGGERNRLQLAKVMKKE----------------GNLLLLDEPTNDLDVDTLRALEDAIQDFAGCAVVISHDRWFLDRLATHILAFEGDSQVYYYQGSYTEYEADRRKRLGNKEPTRMKYATL 660
BLAST of mRNA_H-elongata_contig134347.2438.1 vs. uniprot
Match: A0A383VIE1_TETOB (ABC transporter domain-containing protein (Fragment) n=1 Tax=Tetradesmus obliquus TaxID=3088 RepID=A0A383VIE1_TETOB) HSP 1 Score: 225 bits (574), Expect = 2.930e-71 Identity = 118/209 (56.46%), Postives = 149/209 (71.29%), Query Frame = 1
Query: 1 QSTLLNMIARLDTPDMGELIVGETVDVMYVDQNREGLDDPELSVFQAVTDGAEEITLGPRTINSRAYLSWFNFKGGDQQKKINLLSGGERNRLNLARTLKQARRLTFSFPKDRRPAQGGNLLLLDEPTNDLDVETLRALEEAIDAFPGCAVIVSHDRYFLDKIATHTLAFEDDGGVVWFEGSFAEYEEDLRHRNGGN--EPKRPKFRPL 621
+STL M+ + D+PD G L +GETV M+VDQ+RE LD + +V++A++ GA+E+ L R +NSRAY SW+NFK GDQQKK+ +LSGGERNRL LA LKQ+ GNLLLLDEPTNDLDV+TLR LEEAI F G +++SHDR+FLD++ATH LAFE D V WFEG ++EYEED R R+GG+ P R KFR L
Sbjct: 43 KSTLFRMVMQQDSPDGGRLELGETVVPMWVDQSREALD-ADKTVYEAISGGADEVDLNGRKVNSRAYCSWYNFKSGDQQKKVGVLSGGERNRLQLACVLKQS----------------GNLLLLDEPTNDLDVDTLRCLEEAIVNFAGSVLVISHDRWFLDRVATHILAFEGDSKVTWFEGGYSEYEEDRRARSGGSALSPHRLKFRKL 234 The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig134347.2438.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
The following UTR feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_H-elongata_contig134347.2438.1 >prot_H-elongata_contig134347.2438.1 ID=prot_H-elongata_contig134347.2438.1|Name=mRNA_H-elongata_contig134347.2438.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=205bp MIARLDTPDMGELIVGETVDVMYVDQNREGLDDPELSVFQAVTDGAEEITback to top mRNA from alignment at H-elongata_contig134347:356..1648- Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_H-elongata_contig134347.2438.1 ID=mRNA_H-elongata_contig134347.2438.1|Name=mRNA_H-elongata_contig134347.2438.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=1293bp|location=Sequence derived from alignment at H-elongata_contig134347:356..1648- (Himanthalia elongata Himel1 dioecious)back to top Coding sequence (CDS) from alignment at H-elongata_contig134347:356..1648- >mRNA_H-elongata_contig134347.2438.1 ID=mRNA_H-elongata_contig134347.2438.1|Name=mRNA_H-elongata_contig134347.2438.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=1230bp|location=Sequence derived from alignment at H-elongata_contig134347:356..1648- (Himanthalia elongata Himel1 dioecious)back to top |