prot_H-elongata_contig134335.2436.1 (polypeptide) Himanthalia elongata Himel1 dioecious

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_H-elongata_contig134335.2436.1
Unique Nameprot_H-elongata_contig134335.2436.1
Typepolypeptide
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Sequence length271
Homology
[Close]
BLAST of mRNA_H-elongata_contig134335.2436.1 vs. uniprot
Match: A0A6H5KPZ8_9PHAE (Integrase catalytic domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KPZ8_9PHAE)

HSP 1 Score: 99.8 bits (247), Expect = 5.510e-20
Identity = 60/156 (38.46%), Postives = 88/156 (56.41%), Query Frame = 0 
Query:  117 KFHQVLGHPAQQITRNTARMGGVQLS-GIWRTCVHCSESRARRYAVPKSTENRADRRAGRLFIDLSGPFHETSLERNRFVMLCIDDFTRFKIVRFLKYKSDATNVLRDIINDFLAPEGL--KIGVIRTDGGGEWHGQFLSFLSKLEIKHESTPPYT 269
            ++H   GH  + + R TA   GVQL+ G    C+ CS S+ +   V KST +RA  +  R+++DL G     S+  N + ++  DDF+R+  V FLK+KSDA       + D+   EG+  K+ + RTDGGGE+ GQF     +  IK E TPP+T
Sbjct:  424 EYHLAHGHAHETLLRITAEQQGVQLTDGPLLPCLGCSMSKGQVKPVQKSTSSRAVTKIFRVYLDLGGKMKTRSIGGNWYTLIIRDDFSRWTRVFFLKHKSDAAVGFEKFLADYRT-EGVPCKVYIARTDGGGEFQGQFAEVCRRHGIKQELTPPHT 578
[Close]
BLAST of mRNA_H-elongata_contig134335.2436.1 vs. uniprot
Match: A0A6H5LL52_9PHAE (Integrase catalytic domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5LL52_9PHAE)

HSP 1 Score: 97.4 bits (241), Expect = 1.440e-19
Identity = 58/153 (37.91%), Postives = 84/153 (54.90%), Query Frame = 0 
Query:  119 HQVLGHPAQQITRNTARMGGVQLSG-IWRTCVHCSESRARRYAVPKSTENRADRRAGRLFIDLSGPFHETSLERNRFVMLCIDDFTRFKIVRFLKYKSDATNVLRDIINDFLAPE-GLKIGVIRTDGGGEWHGQFLSFLSKLEIKHESTPPYT 269
            H   GH  +++ + TA+  GVQL+G     C+ CS S+ +   + KST+ RA  +  RLF++L G     S+  N + ++  DD TR+  V FLK+KSDA       + D+ A     ++ V RTDGGGE+ GQF     +  IK E TPP T
Sbjct:  139 HNSHGHTHEELLQKTAKQQGVQLTGGPLLPCLGCSMSKGQVKPISKSTDTRAANKLFRLFLNLGGRMQFKSIGGNWYTLIIRDDCTRWTRVFFLKHKSDAAAAFEQYLADYRAETVPCEVFVARTDGGGEFQGQFAEVCRRSGIKQEFTPPNT 291
[Close]
BLAST of mRNA_H-elongata_contig134335.2436.1 vs. uniprot
Match: A0A6H5JM30_9PHAE (Integrase catalytic domain-containing protein (Fragment) n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JM30_9PHAE)

HSP 1 Score: 95.1 bits (235), Expect = 2.450e-18
Identity = 58/156 (37.18%), Postives = 87/156 (55.77%), Query Frame = 0 
Query:  117 KFHQVLGHPAQQITRNTARMGGVQLS-GIWRTCVHCSESRARRYAVPKSTENRADRRAGRLFIDLSGPFHETSLERNRFVMLCIDDFTRFKIVRFLKYKSDATNVLRDIINDFLAPEGL--KIGVIRTDGGGEWHGQFLSFLSKLEIKHESTPPYT 269
            ++H   G   + + R TA   GVQL+ G    C+ CS S  +   V KST  RA ++  R+++DL G     S+  N + ++  DDF+R+  V FLK+KSDA   L   + D+   +G+  ++ + RTDGGGE+ GQF     +  IK E TPP+T
Sbjct:  588 EYHLAHGQARETLLRITAEQQGVQLTDGPLLPCLGCSMSTGQVKPVQKSTSTRAVKKLFRVYLDLGGKMKTRSIGGNWYTLIIRDDFSRWTRVFFLKHKSDAAVGLEKFLADYRT-KGVPCEVYIARTDGGGEFQGQFAEVCRRHGIKQEFTPPHT 742
[Close]
BLAST of mRNA_H-elongata_contig134335.2436.1 vs. uniprot
Match: A0A6H5KZI6_9PHAE (Integrase catalytic domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KZI6_9PHAE)

HSP 1 Score: 93.6 bits (231), Expect = 7.500e-18
Identity = 57/156 (36.54%), Postives = 87/156 (55.77%), Query Frame = 0 
Query:  117 KFHQVLGHPAQQITRNTARMGGVQLS-GIWRTCVHCSESRARRYAVPKSTENRADRRAGRLFIDLSGPFHETSLERNRFVMLCIDDFTRFKIVRFLKYKSDATNVLRDIINDFLAPEGL--KIGVIRTDGGGEWHGQFLSFLSKLEIKHESTPPYT 269
            ++H   GH  + + R TA   GVQL+ G    C+ CS S+ +   V KST  RA ++  R+++DL G     S+  N + ++  DDF+R+  V FLK+KSDA       + D+   +G+  ++ V RTDGGGE+ GQF     +   K + TPP+T
Sbjct:  441 EYHLAHGHAHETLLRITAEQQGVQLTDGPLLPCLGCSMSKGQVKPVQKSTSTRAVKKLFRVYLDLGGKMKTRSIGGNWYTLIIRDDFSRWTRVFFLKHKSDAAVGFEKFLADYRT-KGVPCEVYVARTDGGGEFQGQFAEVCRRHGNKQKFTPPHT 595
[Close]
BLAST of mRNA_H-elongata_contig134335.2436.1 vs. uniprot
Match: A0A6H5JF14_9PHAE (Reverse transcriptase Ty1/copia-type domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JF14_9PHAE)

HSP 1 Score: 92.4 bits (228), Expect = 1.790e-17
Identity = 55/145 (37.93%), Postives = 81/145 (55.86%), Query Frame = 0 
Query:  127 QQITRNTARMGGVQLSG-IWRTCVHCSESRARRYAVPKSTENRADRRAGRLFIDLSGPFHETSLERNRFVMLCIDDFTRFKIVRFLKYKSDATNVLRDIINDFLAPE-GLKIGVIRTDGGGEWHGQFLSFLSKLEIKHESTPPYT 269
            +++ + TA+  GVQL+G     C+ CS S+ +   + KST+ RA +   RLF+DL G     S+  N + ++  DD TR+  V F+K+KSDA       + D+ A     ++ V RTDGGGE+ GQF     +  IK E TPP T
Sbjct:    3 EELLQKTAKQQGVQLTGGPLLPCLGCSMSKGQVKPISKSTDTRAAKNLFRLFLDLRGRMQFKSIGGNWYTLIIRDDCTRWTRVFFMKHKSDAAAAFERYLADYRAETVPCEVFVARTDGGGEFQGQFAEVCRRYGIKQEFTPPNT 147
[Close]
BLAST of mRNA_H-elongata_contig134335.2436.1 vs. uniprot
Match: A0A6H5L1A7_9PHAE (Integrase catalytic domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L1A7_9PHAE)

HSP 1 Score: 91.3 bits (225), Expect = 4.200e-17
Identity = 57/156 (36.54%), Postives = 84/156 (53.85%), Query Frame = 0 
Query:  117 KFHQVLGHPAQQITRNTARMGGVQLS-GIWRTCVHCSESRARRYAVPKSTENRADRRAGRLFIDLSGPFHETSLERNRFVMLCIDDFTRFKIVRFLKYKSDATNVLRDIINDFLAPEGLKIGVI--RTDGGGEWHGQFLSFLSKLEIKHESTPPYT 269
            ++H   GH  + + R TA   GVQL+ G    C+ CS S+ +   V K T  RA ++  R+++DL G     S+  N + ++  DDF+R+    FLK+KSDA       + D+   +G+   V   RTDGGGE+ GQF     +  IK E TPP+T
Sbjct:  134 EYHLAHGHAHETLLRITAEQQGVQLTDGPLLPCLGCSMSKGQVKPVQKGTSTRAVKKLCRVYLDLEGKMKTRSIGGNWYKLIIRDDFSRWTRGFFLKHKSDAAIGFEKFLADYRT-KGIPCEVYFARTDGGGEFQGQFAEVCRRHGIKEEFTPPHT 288
[Close]
BLAST of mRNA_H-elongata_contig134335.2436.1 vs. uniprot
Match: A0A6H5JGJ0_9PHAE (Integrase catalytic domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JGJ0_9PHAE)

HSP 1 Score: 87.4 bits (215), Expect = 1.760e-16
Identity = 54/153 (35.29%), Postives = 84/153 (54.90%), Query Frame = 0 
Query:  117 KFHQVLGHPAQQITRNTARMGGVQLS-GIWRTCVHCSESRARRYAVPKSTENRADRRAGRLFIDLSGPFHETSLERNRFVMLCIDDFTRFKIVRFLKYKSDATNVLRDIINDFLAPEGL--KIGVIRTDGGGEWHGQFLSFLSKLEIKHESTP 266
            ++H   GH  + + R TA   GVQL+ G    C+ CS S+ +   V KST  RA ++  R+++DL G     ++    + ++  DDF+R+  V FLK+KSDA       + D+   +G+  ++ + RTDGGGE+ GQF     +  IK E TP
Sbjct:  137 EYHLAHGHAHETLLRITAEQQGVQLTDGPLLPCLGCSMSKGQVKPVQKSTSTRAVKKLFRVYLDLGGKMKTRNIGGIWYTLIIRDDFSRWTRVFFLKHKSDAAVGFEKFLADYRT-KGVPCEVYIARTDGGGEFQGQFAEVCRRHGIKQEFTP 288
[Close]
BLAST of mRNA_H-elongata_contig134335.2436.1 vs. uniprot
Match: A0A6H5JIN8_9PHAE (Integrase catalytic domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JIN8_9PHAE)

HSP 1 Score: 87.4 bits (215), Expect = 8.290e-16
Identity = 51/153 (33.33%), Postives = 78/153 (50.98%), Query Frame = 0 
Query:  118 FHQVLGHPAQQITRNTARMGGVQLS-GIWRTCVHCSESRARRYAVPKSTENRADRRAGRLFIDLSGPFHETSLERNRFVMLCIDDFTRFKIVRFLKYKSDATNVLRDIINDFLAPEGLKIGVIRTDGGGEWHGQFLSFLSKLEIKHESTPPYT 269
            +H   GH  + + R TA   GVQL+ G    C+ CS S+ +   V KST  RA ++  R+++DL G     S+  N + ++  DD +R+  V F  +   A    + + +        K+ + RTDGGGE+ GQF     +  IK E TPP+T
Sbjct:  343 YHPAHGHANETLLRITAEQQGVQLTDGPLLPCLGCSMSKGQVKPVQKSTSTRAVKKLFRVYLDLGGKMKTRSIGGNWYTLIIRDDCSRWTCVFFFNHSDAAVGFEKSLADYRTKGVPCKVYIARTDGGGEFQGQFAEVCRRHGIKQEFTPPHT 495
[Close]
BLAST of mRNA_H-elongata_contig134335.2436.1 vs. uniprot
Match: A0A6H5JZ88_9PHAE (Integrase catalytic domain-containing protein (Fragment) n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JZ88_9PHAE)

HSP 1 Score: 87.0 bits (214), Expect = 9.250e-16
Identity = 54/155 (34.84%), Postives = 81/155 (52.26%), Query Frame = 0 
Query:  117 KFHQVLGHPAQQITRNTARMGGVQLS-GIWRTCVHCSESRARRYAVPKSTENRADRRAGRLFIDLSGPFHETSLERNRFVMLCIDDFTRFKIVRFLKYKSDATNVLRDIINDFLAPEG-LKIGVIRTDGGGEWHGQFLSFLSKLEIKHESTPPYT 269
            ++H   GH  + + R TA   GVQL+ G    C+ CS S+ +   V KST  RA  R   +++DL       S+  + + ++  DDF+R+    FLK+KSDA       + D+       ++ + RTDGGGE+ GQF     +  IK E TPP+T
Sbjct:  137 EYHLANGHAHETMLRITAEQQGVQLTDGPLLPCLGCSMSKGQVKPVQKSTSTRAVIRIFHVYLDLGRNMKTRSIGGSWYTLIIRDDFSRWTRDFFLKHKSDAAVGFEKFLADYRTKGAPCEVHIARTDGGGEFQGQFAEVCRRHGIKQEFTPPHT 291
[Close]
BLAST of mRNA_H-elongata_contig134335.2436.1 vs. uniprot
Match: A0A0A9XD75_LYGHE (Retrovirus-related Pol polyprotein from transposon TNT 1-94 (Fragment) n=4 Tax=Lygus hesperus TaxID=30085 RepID=A0A0A9XD75_LYGHE)

HSP 1 Score: 79.0 bits (193), Expect = 7.420e-13
Identity = 54/156 (34.62%), Postives = 83/156 (53.21%), Query Frame = 0 
Query:  118 FHQVLGHPAQQITRNTARMG-GVQLSG-IWRTCVHCSESRARRYAVPKSTENRADRRAGRLFIDLSGPFHETSLERNRFVMLCIDDFTRFKIVRFLKYKSDATNVLRDIINDFLAPEGLKIGVIRTDGGGEWHGQ-FLSFLSKLEIKHESTPPYTS 270
            +H+ +GH  +      ++M  GV+ S  +   C  C+  +  R    K +++RA      L +DL GP    S+   RF+   +DD +R+  V FLK+KSDA  V +D         GLKI +IRTDGG E+  Q F ++L+ L ++H+ T  YTS
Sbjct:  193 WHRRMGHLNRARMAQLSKMAVGVENSSPLQSVCEVCALGKQARLPF-KPSKHRAKNILDLLHLDLCGPMETASIGGKRFMFTIVDDCSRYTHVFFLKHKSDAFAVFKDFQTLVERQMGLKIKMIRTDGGTEFVNQAFKNYLADLGVRHQQTVRYTS 347
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig134335.2436.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6H5KPZ8_9PHAE5.510e-2038.46Integrase catalytic domain-containing protein n=1 ... [more]
A0A6H5LL52_9PHAE1.440e-1937.91Integrase catalytic domain-containing protein n=1 ... [more]
A0A6H5JM30_9PHAE2.450e-1837.18Integrase catalytic domain-containing protein (Fra... [more]
A0A6H5KZI6_9PHAE7.500e-1836.54Integrase catalytic domain-containing protein n=1 ... [more]
A0A6H5JF14_9PHAE1.790e-1737.93Reverse transcriptase Ty1/copia-type domain-contai... [more]
A0A6H5L1A7_9PHAE4.200e-1736.54Integrase catalytic domain-containing protein n=1 ... [more]
A0A6H5JGJ0_9PHAE1.760e-1635.29Integrase catalytic domain-containing protein n=1 ... [more]
A0A6H5JIN8_9PHAE8.290e-1633.33Integrase catalytic domain-containing protein n=1 ... [more]
A0A6H5JZ88_9PHAE9.250e-1634.84Integrase catalytic domain-containing protein (Fra... [more]
A0A0A9XD75_LYGHE7.420e-1334.62Retrovirus-related Pol polyprotein from transposon... [more]

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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR036397Ribonuclease H superfamilyGENE3D3.30.420.10coord: 162..270
e-value: 2.8E-12
score: 48.3
NoneNo IPR availablePANTHERPTHR11439:SF250coord: 100..269
IPR039537Retrotransposon Ty1/copia-likePANTHERPTHR11439GAG-POL-RELATED RETROTRANSPOSONcoord: 100..269
IPR001584Integrase, catalytic corePROSITEPS50994INTEGRASEcoord: 158..270
score: 11.184
IPR012337Ribonuclease H-like superfamilySUPERFAMILY53098Ribonuclease H-likecoord: 168..270

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig134335contigH-elongata_contig134335:534..1442 -
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-09-29
Diamond blastp: OGS1.0 vs UniRef902022-09-16
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig134335.2436.1mRNA_H-elongata_contig134335.2436.1Himanthalia elongata Himel1 dioeciousmRNAH-elongata_contig134335 534..1472 -


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_H-elongata_contig134335.2436.1 ID=prot_H-elongata_contig134335.2436.1|Name=mRNA_H-elongata_contig134335.2436.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=271bp
MTQDPAGLEDYTPEPAGDRVESAGGTLFPVAGYGHLRLLVDQGNVNFTDS
TRQLTLKHVAHVPNLGQKNMLSTKQLTQFFDAPMRVYPAAALIRPRRGDM
PLFSRPLRPENGLLDIKFHQVLGHPAQQITRNTARMGGVQLSGIWRTCVH
CSESRARRYAVPKSTENRADRRAGRLFIDLSGPFHETSLERNRFVMLCID
DFTRFKIVRFLKYKSDATNVLRDIINDFLAPEGLKIGVIRTDGGGEWHGQ
FLSFLSKLEIKHESTPPYTS*
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Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR036397RNaseH_sf
IPR039537Retrotran_Ty1/copia-like
IPR001584Integrase_cat-core
IPR012337RNaseH-like_sf