mRNA_H-elongata_contig134294.2433.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview


Name	mRNA_H-elongata_contig134294.2433.1
Unique Name	mRNA_H-elongata_contig134294.2433.1
Type	mRNA
Organism	Himanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)

Homology

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BLAST of mRNA_H-elongata_contig134294.2433.1 vs. uniprot
Match: D7FYI3_ECTSI (Hsp90 chaperone protein kinase-targeting subunit n=2 Tax=Ectocarpus TaxID=2879 RepID=D7FYI3_ECTSI)

HSP 1 Score: 151 bits (382), Expect = 1.060e-41
Identity = 77/110 (70.00%), Postives = 91/110 (82.73%), Query Frame = 1

Query:   19 ALEAERGEIKEAIAQRRKEVESIDRNKTWNWENMCHVTEERTIINKNADSEAKDTTTRSALPPKLAEALGATPKT-NVPGPESTTSEVHSYSEFVEEHDGIMEDYCDLVS 345
            AL  E  E+++A+  +RKEVESI+RNKTWNWENMCHVTEERTIINK+ADSEAKDTT RSALPPKLA ALG  P+    PGPE+TT EVHSYS+FV+EH+ +ME Y +L S
Sbjct:   88 ALTVEAEELQKAVEAKRKEVESIERNKTWNWENMCHVTEERTIINKSADSEAKDTTMRSALPPKLAAALGEKPRAVTAPGPETTTQEVHSYSDFVQEHEDVMEKYSELHS 197

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BLAST of mRNA_H-elongata_contig134294.2433.1 vs. uniprot
Match: A0A836C784_9STRA (Hsp90 chaperone protein kinase-targeting subunit n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836C784_9STRA)

HSP 1 Score: 96.7 bits (239), Expect = 3.930e-21
Identity = 48/103 (46.60%), Postives = 68/103 (66.02%), Query Frame = 1

Query:   43 IKEAIAQRRKEVESIDRNKTWNWENMCHVTEERTIINKNADSEAKDTTTRSALPPKLAEAL--GATPKTNVPGPESTTSEVHSYSEFVEEHDGIMEDYCDLVS 345
            ++EA+ +R K ++ I++NK WNWENMCHV EERTI++     + KD T  S LPPKLA A+  G      VPGP S   EV SYS+FVE ++ ++E + ++ S
Sbjct:   95 LEEAMEKRHKRLQEIEKNKKWNWENMCHVVEERTIVSAEKAGDGKDNTVHSELPPKLAAAIAGGKAAVKPVPGPASVKQEVTSYSQFVEAYEELLERFSEIAS 197

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BLAST of mRNA_H-elongata_contig134294.2433.1 vs. uniprot
Match: A0A7S2XXR3_9STRA (Hsp90 chaperone protein kinase-targeting subunit n=1 Tax=Fibrocapsa japonica TaxID=94617 RepID=A0A7S2XXR3_9STRA)

HSP 1 Score: 72.4 bits (176), Expect = 1.920e-12
Identity = 49/123 (39.84%), Postives = 71/123 (57.72%), Query Frame = 1

Query:    7 VEQTALEAERGEIKEAIAQRRKEVESIDRNKTWNWENMCHVTEERTIINKNADSEA---KDTTTRSALPPKLAEALGA-------TPKTNVPGPESTTSEVHSYSEFVEEHDGIMEDYCDLVS 345
            V++ ALEAE  +++  I +R + +E ++RNK WN +NMCHV EERTIIN    S+    KDT  R   P    +A GA       T  T V GP+  T EV SY+ F  +H+ ++E++  + S
Sbjct:   95 VDREALEAELKDLQGVIDRRNERLEEMERNKKWNVDNMCHVVEERTIINPALGSQEGTIKDTMYRD--PNMKEQADGAEDGAPVQTVTTAVKGPKPETQEVESYAIFTRKHENMLEEFSVMTS 215

The following BLAST results are available for this feature:

BLAST of mRNA_H-elongata_contig134294.2433.1 vs. uniprot

BLAST of mRNA_H-elongata_contig134294.2433.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 3


Match Name	E-value	Identity	Description
D7FYI3_ECTSI	1.060e-41	70.00	Hsp90 chaperone protein kinase-targeting subunit n...	[more]
A0A836C784_9STRA	3.930e-21	46.60	Hsp90 chaperone protein kinase-targeting subunit n...	[more]
A0A7S2XXR3_9STRA	1.920e-12	39.84	Hsp90 chaperone protein kinase-targeting subunit n...	[more]

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
H-elongata_contig134294	contig	H-elongata_contig134294:68..1411 -

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Diamond blastx: OGS1.0 vs UniRef90	2022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious	2021-02-24

Properties


Property Name	Value
Taxonomic scope	Eukaryota
Seed ortholog score	152.9
Seed ortholog evalue	9.4e-35
Seed eggNOG ortholog	2880.D7FYI3
Preferred name	CDC37
KEGG ko	ko:K09554
KEGG Pathway	ko04151,map04151
GOs	GO:0000079,GO:0000161,GO:0000165,GO:0000226,GO:0000793,GO:0001726,GO:0001932,GO:0001934,GO:0001959,GO:0002576,GO:0002682,GO:0003674,GO:0003824,GO:0004672,GO:0004713,GO:0005488,GO:0005515,GO:0005575,GO:0005576,GO:0005622,GO:0005623,GO:0005634,GO:0005694,GO:0005737,GO:0005819,GO:0005829,GO:0005856,GO:0005886,GO:0006457,GO:0006464,GO:0006468,GO:0006605,GO:0006793,GO:0006796,GO:0006807,GO:0006810,GO:0006886,GO:0006887,GO:0006950,GO:0006996,GO:0007010,GO:0007017,GO:0007049,GO:0007154,GO:0007165,GO:0007166,GO:0007167,GO:0007169,GO:0008022,GO:0008047,GO:0008104,GO:0008150,GO:0008152,GO:0009893,GO:0009894,GO:0009896,GO:0009966,GO:0009987,GO:0010468,GO:0010506,GO:0010508,GO:0010562,GO:0010604,GO:0010608,GO:0010638,GO:0010646,GO:0010821,GO:0010822,GO:0012505,GO:0015031,GO:0015630,GO:0015833,GO:0016020,GO:0016043,GO:0016192,GO:0016239,GO:0016241,GO:0016301,GO:0016310,GO:0016740,GO:0016772,GO:0016773,GO:0018108,GO:0018193,GO:0018212,GO:0019207,GO:0019209,GO:0019220,GO:0019222,GO:0019538,GO:0019887,GO:0019899,GO:0019900,GO:0019901,GO:0022402,GO:0022607,GO:0023014,GO:0023051,GO:0023052,GO:0030141,GO:0030234,GO:0030295,GO:0030296,GO:0030474,GO:0031023,GO:0031072,GO:0031089,GO:0031098,GO:0031252,GO:0031253,GO:0031256,GO:0031323,GO:0031325,GO:0031329,GO:0031331,GO:0031347,GO:0031399,GO:0031401,GO:0031410,GO:0031435,GO:0031647,GO:0031974,GO:0031982,GO:0031983,GO:0032147,GO:0032268,GO:0032270,GO:0032587,GO:0032872,GO:0032940,GO:0032991,GO:0033036,GO:0033043,GO:0033554,GO:0033674,GO:0034613,GO:0034774,GO:0035556,GO:0035690,GO:0036211,GO:0038127,GO:0038128,GO:0042221,GO:0042325,GO:0042327,GO:0042493,GO:0042827,GO:0042886,GO:0042995,GO:0043085,GO:0043170,GO:0043226,GO:0043227,GO:0043228,GO:0043229,GO:0043231,GO:0043232,GO:0043233,GO:0043408,GO:0043412,GO:0043422,GO:0043549,GO:0044085,GO:0044093,GO:0044237,GO:0044238,GO:0044260,GO:0044267,GO:0044422,GO:0044424,GO:0044425,GO:0044430,GO:0044433,GO:0044444,GO:0044446,GO:0044459,GO:0044463,GO:0044464,GO:0045055,GO:0045088,GO:0045184,GO:0045859,GO:0045860,GO:0045937,GO:0046903,GO:0046907,GO:0048518,GO:0048522,GO:0048583,GO:0050730,GO:0050731,GO:0050776,GO:0050789,GO:0050790,GO:0050794,GO:0050821,GO:0050896,GO:0051082,GO:0051087,GO:0051128,GO:0051130,GO:0051171,GO:0051173,GO:0051174,GO:0051179,GO:0051234,GO:0051246,GO:0051247,GO:0051300,GO:0051338,GO:0051347,GO:0051403,GO:0051641,GO:0051649,GO:0051716,GO:0051726,GO:0051879,GO:0060205,GO:0060255,GO:0060330,GO:0060334,GO:0060338,GO:0060759,GO:0061077,GO:0061097,GO:0061098,GO:0065007,GO:0065008,GO:0065009,GO:0070013,GO:0070302,GO:0070727,GO:0070887,GO:0071702,GO:0071704,GO:0071705,GO:0071840,GO:0071900,GO:0071944,GO:0072686,GO:0080090,GO:0080134,GO:0080135,GO:0097110,GO:0097708,GO:0098590,GO:0098772,GO:0098779,GO:0098780,GO:0099503,GO:0101031,GO:0120025,GO:0120038,GO:0140096,GO:1901524,GO:1901526,GO:1901564,GO:1902531,GO:1903146,GO:1903599,GO:1904029,GO:1904923,GO:1904925,GO:1990565
EggNOG free text desc.	chaperone binding
EggNOG OGs	KOG2260@1,KOG2260@2759
Ec32 ortholog description	Cdc37, N-terminal domain
Ec32 ortholog	Ec-23_003080.1
COG Functional cat.	D
Best tax level	Eukaryota
Best eggNOG OG	NA\|NA\|NA
BRITE	ko00000,ko00001,ko00536,ko03029,ko03110
Hectar predicted targeting category	other localisation
Exons	3
Model size	360
Cds size	360
Stop	1
Start	1

Relationships

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type	Position
mRNA_H-elongata_contig134294.2433.1	prot_H-elongata_contig134294.2433.1	Himanthalia elongata Himel1 dioecious	polypeptide	H-elongata_contig134294 68..1411 -

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
1622929797.793851-CDS-H-elongata_contig134294:67..154	1622929797.793851-CDS-H-elongata_contig134294:67..154	Himanthalia elongata Himel1 dioecious	CDS	H-elongata_contig134294 68..154 -
1691679161.4512873-CDS-H-elongata_contig134294:67..154	1691679161.4512873-CDS-H-elongata_contig134294:67..154	Himanthalia elongata Himel1 dioecious	CDS	H-elongata_contig134294 68..154 -
1622929797.8142147-CDS-H-elongata_contig134294:632..734	1622929797.8142147-CDS-H-elongata_contig134294:632..734	Himanthalia elongata Himel1 dioecious	CDS	H-elongata_contig134294 633..734 -
1691679161.4631715-CDS-H-elongata_contig134294:632..734	1691679161.4631715-CDS-H-elongata_contig134294:632..734	Himanthalia elongata Himel1 dioecious	CDS	H-elongata_contig134294 633..734 -
1622929797.8336077-CDS-H-elongata_contig134294:1240..1411	1622929797.8336077-CDS-H-elongata_contig134294:1240..1411	Himanthalia elongata Himel1 dioecious	CDS	H-elongata_contig134294 1241..1411 -
1691679161.472235-CDS-H-elongata_contig134294:1240..1411	1691679161.472235-CDS-H-elongata_contig134294:1240..1411	Himanthalia elongata Himel1 dioecious	CDS	H-elongata_contig134294 1241..1411 -

Sequences

The following sequences are available for this feature:

protein sequence
mRNA from alignment at H-elongata_contig134294:68..1411-
coding sequence from alignment at H-elongata_contig134294:68..1411-

protein sequence of mRNA_H-elongata_contig134294.2433.1

>prot_H-elongata_contig134294.2433.1 ID=prot_H-elongata_contig134294.2433.1|Name=mRNA_H-elongata_contig134294.2433.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=120bp
MAVEQTALEAERGEIKEAIAQRRKEVESIDRNKTWNWENMCHVTEERTII
NKNADSEAKDTTTRSALPPKLAEALGATPKTNVPGPESTTSEVHSYSEFV
EEHDGIMEDYCDLVSGGGE*

mRNA from alignment at H-elongata_contig134294:68..1411-

Legend: polypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

>mRNA_H-elongata_contig134294.2433.1 ID=mRNA_H-elongata_contig134294.2433.1|Name=mRNA_H-elongata_contig134294.2433.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=1344bp|location=Sequence derived from alignment at H-elongata_contig134294:68..1411- (Himanthalia elongata Himel1 dioecious)
ATGGCTGTCGAACAGACCGCGCTAGAGGCAGAAAGAGGCGAAATCAAGGA
AGCGATTGCGCAAAGGAGGAAGGAGGTGGAATCGATCGACCGGAACAAGA
CGTGGAACTGGGAAAACATGTGCCACGTCACGGAGGAGCGGACCATTATC
AACAAAAACGCCGACAGCGAGGTGCAGCCGAAGTGAAGTGTCCCGTGCGA
CTCGAATCGATATTTGGGCGCTTTGTTGTTGTTGTCTTTTGCCATATTTT
TGTGTTAGATGAGGTCTCAGAGGTGCTGAGCTGAGCTTGCATCGGTATTG
ACAATAAAAATAAGGGATGCAGGGGGTTTTACCAGGTAGAGATGGGTAGA
TCCCGGAGGCGTTTACAGGGCGGGGAAGAAAAGGGGGGCATCGCGACAGG
ATATACTATTTATGTTTTAGCTGTTATGAATAGATGATACAGGGGAAATA
GATGATAGGTTTATCCTTGGTGCTTCCGCTCGGTGTTTACAAAAGGCGAG
ATAAAATCCTTCCCGTACATGTACTCTACTGTGTTTTATCGCGTTATCAT
TTGTTTACTCTCCCGATTGCTATCGTGTGCTGTGGCCGCGTCTACTCTTT
TGTGTATTGTATTCTATTGTATTCTCGGGATCGTTAACCTTTCGGGTGAA
ATGGTGGTGACGTCACGTCACGAGAAGGCGAAAGATACTACGACGAGGTC
GGCGCTGCCGCCGAAGCTTGCGGAAGCGCTTGGAGCCACCCCGAAGACGA
ATGTGCCGGGCCCTGAGTCTACGACCAGCGTGAGTCGTTGAAAACGCTTG
TCTGGTGTATCGCTTGTATAAATTACAAGAGGTAGTAATGCCCACACACA
CACATTCGAACCTTACGATAGTTGGTCCTCTGGACTGTACTTCTCAACGT
GCTAAGAAGTTGATTGGGCCTACATTTCCAACCCCGCTAGAGTAGCTTGT
TGTACTCTACAATACTGTACCATACAATACTGTACCCTGAACAGGGGAAA
AGCCATGGGGATATTATAGGGTTTCCACGTTATAAAAAGTGTATGAAAAG
AATGCAGTAAAGTGAAAAGGAACCTAAACTAGTCTGCCATTGGAAGGGGC
TTAACGGAAATGACACATGAAAACAACATCATATATCATGGGGGTTGGGT
CATGATATTAACCAACTCGTAAGTCATGCCGCCCCCAACCTCCGCATCCG
ACGTGGAAAGCTTATAACCCGCCTGCGTGTTGCGGCCGACACCACGGTTC
GCGGCAGGAGGTGCACTCGTACTCGGAGTTCGTAGAGGAGCACGATGGGA
TCATGGAAGATTACTGCGACCTGGTAAGTGGGGGAGGGGAATGA

Coding sequence (CDS) from alignment at H-elongata_contig134294:68..1411-

>mRNA_H-elongata_contig134294.2433.1 ID=mRNA_H-elongata_contig134294.2433.1|Name=mRNA_H-elongata_contig134294.2433.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=720bp|location=Sequence derived from alignment at H-elongata_contig134294:68..1411- (Himanthalia elongata Himel1 dioecious)
ATGGCTGTCGAACAGACCGCGCTAGAGGCAGAAAGAGGCGAAATCAAGGA
AGCGATTGCGCAAAGGAGGAAGGAGGTGGAATCGATCGACCGGAACAAGA
CGTGGAACTGGGAAAACATGTGCCACGTCACGGAGGAGCGGACCATTATC
AACAAAAACGCCGACAGCGAGATGGCTGTCGAACAGACCGCGCTAGAGGC
AGAAAGAGGCGAAATCAAGGAAGCGATTGCGCAAAGGAGGAAGGAGGTGG
AATCGATCGACCGGAACAAGACGTGGAACTGGGAAAACATGTGCCACGTC
ACGGAGGAGCGGACCATTATCAACAAAAACGCCGACAGCGAGGCGAAAGA
TACTACGACGAGGTCGGCGCTGCCGCCGAAGCTTGCGGAAGCGCTTGGAG
CCACCCCGAAGACGAATGTGCCGGGCCCTGAGTCTACGACCAGCGCGAAA
GATACTACGACGAGGTCGGCGCTGCCGCCGAAGCTTGCGGAAGCGCTTGG
AGCCACCCCGAAGACGAATGTGCCGGGCCCTGAGTCTACGACCAGCGAGG
TGCACTCGTACTCGGAGTTCGTAGAGGAGCACGATGGGATCATGGAAGAT
TACTGCGACCTGGTAAGTGGGGGAGGGGAATGAGAGGTGCACTCGTACTC
GGAGTTCGTAGAGGAGCACGATGGGATCATGGAAGATTACTGCGACCTGG
TAAGTGGGGGAGGGGAATGA