mRNA_H-elongata_contig134273.2431.1 (mRNA) Himanthalia elongata Himel1 dioecious
|
Overview
Homology
BLAST of mRNA_H-elongata_contig134273.2431.1 vs. uniprot
Match: Q2R5J0_ORYSJ (Retrotransposon protein, putative, Ty1-copia sub-class n=2 Tax=Oryza sativa subsp. japonica TaxID=39947 RepID=Q2R5J0_ORYSJ) HSP 1 Score: 105 bits (261), Expect = 2.490e-23 Identity = 68/171 (39.77%), Postives = 99/171 (57.89%), Query Frame = 1
Query: 1 WQVVERPKGKTVLGTRVVFKRKIDMDGRIEKYKCRLVAQGSK-----------------TSIRMVLGMIAALGWEARQLDVDMAYLEAEVEDIYVELPEAYRDSRRQ--VGLLKKAMYGLVHAGLLW*KKFGIELEAKGFQRSQADPCVFRRILHGVVVVVIVVYVDDLLV 456
W+VVERP G +G + VFK+K+ DG IEKYK RLVA+G T+IR++L + A+ G Q+DV A+L E+E+IY++ P+ Y R+ V L K++YGL A W +KF I L + GF ++AD CV+ R G V++ +YVDD+L+
Sbjct: 858 WEVVERPYGCKPVGCKWVFKKKLRPDGTIEKYKARLVAKGYTQKEGEDFFDTYSPVARLTTIRVLLALAASHGLLVHQMDVKTAFLNGELEEIYMDQPDGYVLEGREGMVCKLLKSLYGLKQAPKQWHEKFDITLTSAGFVVNEADKCVYYR-YGGGEGVILCLYVDDILI 1027
BLAST of mRNA_H-elongata_contig134273.2431.1 vs. uniprot
Match: A0A0C3AKI0_9AGAM (Uncharacterized protein (Fragment) n=1 Tax=Serendipita vermifera MAFF 305830 TaxID=933852 RepID=A0A0C3AKI0_9AGAM) HSP 1 Score: 103 bits (257), Expect = 8.630e-23 Identity = 59/169 (34.91%), Postives = 93/169 (55.03%), Query Frame = 1
Query: 1 WQVVERPKGKTVLGTRVVFKRKIDMDGRIEKYKCRLVAQGSKT-----------------SIRMVLGMIAALGWEARQLDVDMAYLEAEVED-IYVELPEAYRDSRRQVGLLKKAMYGLVHAGLLW*KKFGIELEAKGFQRSQADPCVFRRILHGVVVVVIVVYVDDLL 453
W++ E + + ++G+R VF +K D G++ +YK RLVAQG ++R + + A WE RQ+D+ AYL E+E+ I++E PE + D +V LK +YGL AG +W KK +L GF R+ ADPCV+ G + + + V+VDD++
Sbjct: 887 WELDEPDEERKLVGSRWVFAKKYDEHGKVNQYKARLVAQGFSQIPGVDYTDNYSPVVRLDAVRACIALSAIKDWEMRQIDIKGAYLNGELEEEIFMEQPEGFNDGSGRVCRLKLPLYGLKQAGRMWNKKLNAQLTTLGFNRTNADPCVYYNNQDGKITI-LTVWVDDII 1054
BLAST of mRNA_H-elongata_contig134273.2431.1 vs. uniprot
Match: A0A392MGQ0_9FABA (Reverse transcriptase Ty1/copia-type domain-containing protein (Fragment) n=1 Tax=Trifolium medium TaxID=97028 RepID=A0A392MGQ0_9FABA) HSP 1 Score: 102 bits (253), Expect = 1.960e-22 Identity = 63/171 (36.84%), Postives = 92/171 (53.80%), Query Frame = 1
Query: 1 WQVVERPKGKTVLGTRVVFKRKIDMDGRIEKYKCRLVAQG-----------------SKTSIRMVLGMIAALGWEARQLDVDMAYLEAEV-EDIYVELPEAYR-DSRRQVGLLKKAMYGLVHAGLLW*KKFGIELEAKGFQRSQADPCVFRRILHGVVVVVIVVYVDDLLV 456
W++ PKGK +G R V+K K G +EKYK RLVA+G T++R +L + A GWE Q+DV A+L E+ E++Y+E+P Y+ + V L+K++YGL A W K L GFQ +AD +F HG +V+++YVDDL+V
Sbjct: 220 WEMSRLPKGKKAVGCRWVYKVKYKSTGEVEKYKARLVAKGYTQVEGDDFNETFAPVAKMTTVRCLLTVAVAKGWELHQMDVSNAFLHGELDEEVYMEVPPGYKVPDKEMVCRLRKSLYGLRQASRNWYSKLSQALVKYGFQECEADHSLFTY-SHGSTFIVVLIYVDDLVV 389
BLAST of mRNA_H-elongata_contig134273.2431.1 vs. uniprot
Match: A0A182GIT5_AEDAL (Reverse transcriptase Ty1/copia-type domain-containing protein n=2 Tax=Aedes albopictus TaxID=7160 RepID=A0A182GIT5_AEDAL) HSP 1 Score: 102 bits (253), Expect = 2.110e-22 Identity = 61/171 (35.67%), Postives = 96/171 (56.14%), Query Frame = 1
Query: 1 WQVVERPKGKTVLGTRVVFKRKIDMDGRIEKYKCRLVAQG-----------------SKTSIRMVLGMIAALGWEARQLDVDMAYLEAEVED-IYVELPEAYRDSRRQ-VGLLKKAMYGLVHAGLLW*KKFGIELEAKGFQRSQADPCVFRRILHGVVVVVIVVYVDDLLV 456
WQ+ + P G+ +G + +FKRK+D DG + +YK RLVAQG + + R++L + + G + DV AYL E+E+ I++ P Y D R V L+K++YGL AG +W KKF L+ FQ+S+ DPC++ R +G +V+YVDD+++
Sbjct: 26 WQLTDLPPGRKAVGCKWIFKRKLDEDGNVVRYKARLVAQGFTQKFGTDYDEVFAPVVRQVTFRVLLTVASQRGMVVKHADVKTAYLNGELEESIFMRQPPGYEDENRDAVCSLQKSLYGLKQAGYVWNKKFDQVLKRMKFQQSKNDPCLYVR-RNGKGYTYLVIYVDDMVI 195
BLAST of mRNA_H-elongata_contig134273.2431.1 vs. uniprot
Match: A0A7D9HXK4_PARCT (Retrovirus-related Pol poly from transposon TNT 1-94 n=2 Tax=Paramuricea clavata TaxID=317549 RepID=A0A7D9HXK4_PARCT) HSP 1 Score: 102 bits (254), Expect = 2.130e-22 Identity = 59/173 (34.10%), Postives = 100/173 (57.80%), Query Frame = 1
Query: 1 WQVVERPKGKTVLGTRVVFKRKIDMDGRIEKYKCRLVAQG-----------------SKTSIRMVLGMIAALGWEARQLDVDMAYLEAEVEDIYVELPEAY--RDSRRQVGLLKKAMYGLVHAGLLW*KKFGIELEAKGFQRSQADPCVFRRIL---HGVVVVVIVVYVDDLL 453
W++V PKGK V+G++ VFK K D +G +++YK RLVAQG T+IR +L + A WE Q+DV A+L+ +E+IY+ P+ Y ++ V LKK++YGL + W L++ G+++ ++DPC++ + + +GV+++ I +VDD+L
Sbjct: 755 WELVSLPKGKNVVGSKWVFKVKRDENGCVQRYKARLVAQGYTQAEGVDYSEVFSPVVRNTTIRSLLALSNAKNWEVHQMDVKTAFLQGNLEEIYMRQPDGYVNKELPNHVCKLKKSIYGLKQSARCWNNAIDTFLKSSGYKQMESDPCLYMKSIRDQNGVIILSI--HVDDIL 925
BLAST of mRNA_H-elongata_contig134273.2431.1 vs. uniprot
Match: A0A177TV96_9BASI (Integrase catalytic domain-containing protein n=1 Tax=Tilletia indica TaxID=43049 RepID=A0A177TV96_9BASI) HSP 1 Score: 102 bits (254), Expect = 2.170e-22 Identity = 60/170 (35.29%), Postives = 98/170 (57.65%), Query Frame = 1
Query: 1 WQVVERPKGKTVLGTRVVFKRKIDMDGRIEKYKCRLVAQGSK-----------------TSIRMVLGMIAALGWEARQLDVDMAYLEAEV-EDIYVELPEAYRDSRRQVGLLKKAMYGLVHAGLLW*KKFGIELEAKGFQRSQADPCVFRRILHGVVVVVIVVYVDDLLV 456
W++VE PKG+ V+G+R V+K K+D DGR +YK RLVAQG ++IR+++ + AL +D+ AYL ++ E++Y++ P Y D +V LL++A+YGL AG W +L + G+ + Q++PC+F R V++ VYVDD+++
Sbjct: 725 WELVELPKGRDVVGSRWVYKLKLDRDGRASRYKGRLVAQGFTQRDGIDFSDTFAPVARLSTIRIIISLALALSLNLGSIDIKTAYLNGKLQEEVYMQQPPEYDDGTGRVCLLRRAIYGLKQAGRAWFDTLKGKLLSAGYTQIQSEPCLFVR-FGDAGPVILAVYVDDIVI 893
BLAST of mRNA_H-elongata_contig134273.2431.1 vs. uniprot
Match: UPI00053AD58B (uncharacterized protein LOC104704907 n=2 Tax=Camelina sativa TaxID=90675 RepID=UPI00053AD58B) HSP 1 Score: 100 bits (250), Expect = 7.360e-22 Identity = 60/176 (34.09%), Postives = 97/176 (55.11%), Query Frame = 1
Query: 1 WQVVERPKGKTVLGTRVVFKRKIDMDGRIEKYKCRLVAQG-----------------SKTSIRMVLGMIAALGWEARQLDVDMAYLEAEV-EDIYVELPEAYRDSR------RQVGLLKKAMYGLVHAGLLW*KKFGIELEAKGFQRSQADPCVFRRILHGVVVVVIVVYVDDLLV 456
W + P GK V+G + V+K K DG +E++K RLVA+G TS++M+LG A LGW QLD+ A+L ++ E+IY+ LP Y S+ V L K++YGL A W KF L++ GF ++ +D +F ++ G ++++++VYVDD+++
Sbjct: 845 WSICSLPAGKHVIGCKWVYKVKYHSDGTLERHKARLVAKGYTQKEGLDYVDTYSPVAKLTSVKMLLGAAAKLGWSLSQLDISNAFLNGDLDEEIYMRLPPGYASSKGDSLPPNAVCKLNKSLYGLKQASRQWYLKFAETLQSLGFLKNHSDHTLFTKVT-GSILLIVLVYVDDIII 1019
BLAST of mRNA_H-elongata_contig134273.2431.1 vs. uniprot
Match: A0A2K3MWZ8_TRIPR (Retroelement pol polyprotein-like n=1 Tax=Trifolium pratense TaxID=57577 RepID=A0A2K3MWZ8_TRIPR) HSP 1 Score: 100 bits (250), Expect = 7.560e-22 Identity = 62/171 (36.26%), Postives = 91/171 (53.22%), Query Frame = 1
Query: 1 WQVVERPKGKTVLGTRVVFKRKIDMDGRIEKYKCRLVAQG-----------------SKTSIRMVLGMIAALGWEARQLDVDMAYLEAEV-EDIYVELPEAYR-DSRRQVGLLKKAMYGLVHAGLLW*KKFGIELEAKGFQRSQADPCVFRRILHGVVVVVIVVYVDDLLV 456
W++ PKGK +G R V+K K G +EKYK RLVA+G T++R +L + A GWE Q+DV A+L E+ E++Y+E+P YR + V L+K++YGL A W K L GF +AD +F HG + + +++YVDDL+V
Sbjct: 953 WEMSRLPKGKKAVGCRWVYKVKYKSTGEVEKYKARLVAKGYTQVEGDDFNETFAPDAKMTTVRCLLTVAVAKGWELHQMDVSNAFLHGELDEEVYMEVPPGYRVPDKEMVCRLRKSLYGLRQASRNWYSKLSQALVKYGFHECEADHSLFTY-SHGSIFIAVLIYVDDLVV 1122
BLAST of mRNA_H-elongata_contig134273.2431.1 vs. uniprot
Match: A0A396GW39_MEDTR (Putative RNA-directed DNA polymerase n=2 Tax=Medicago truncatula TaxID=3880 RepID=A0A396GW39_MEDTR) HSP 1 Score: 100 bits (249), Expect = 1.020e-21 Identity = 58/171 (33.92%), Postives = 101/171 (59.06%), Query Frame = 1
Query: 1 WQVVERPKGKTVLGTRVVFKRKIDMDGRIEKYKCRLVAQGSKT-----------------SIRMVLGMIAALGWEARQLDVDMAYLEAEV-EDIYVELPEAYRDSR--RQVGLLKKAMYGLVHAGLLW*KKFGIELEAKGFQRSQADPCVFRRILHGVVVVVIVVYVDDLL 453
W +++ P+G +G + VFK+KIDMDG++ YK RLVA+G K SIR++L + A +E Q+DV A+L + ED+Y+ PE + D + ++V L++++YGL A W +F ++ GF +++ +PCV++++ G +V +++YVDD+L
Sbjct: 799 WNLIDAPEGINPIGCKWVFKKKIDMDGKVSTYKARLVAKGFKQIHGVDYDETFSPVAMIKSIRILLAIAAYHDYEIWQMDVKTAFLNGNLLEDVYMTQPEGFGDPKATKKVCKLQRSIYGLKQASRSWNLRFDETVQQYGFIKNEDEPCVYKKV-SGSIVSFLILYVDDIL 968
BLAST of mRNA_H-elongata_contig134273.2431.1 vs. uniprot
Match: A0A5S6QJY9_TRIMR (Integrase catalytic domain-containing protein n=1 Tax=Trichuris muris TaxID=70415 RepID=A0A5S6QJY9_TRIMR) HSP 1 Score: 99.8 bits (247), Expect = 1.820e-21 Identity = 61/169 (36.09%), Postives = 92/169 (54.44%), Query Frame = 1
Query: 1 WQVVERPKGKTVLGTRVVFKRKIDMDGRIEKYKCRLVAQG-----------------SKTSIRMVLGMIAALGWEARQLDVDMAYLEAEV-EDIYVELPEAYRDSRRQVGLLKKAMYGLVHAGLLW*KKFGIELEAKGFQRSQADPCVFRRILHGVVVVVIVVYVDDLL 453
W V+ P+ +G++ VF+RK+D G +E+YK RLVA+G S T IR +L + GW R +DV AYL ++ E+IY++LPE Y + +V L + +YGL +G +W + + LE GFQR + CV+ ++IVVYVDD+L
Sbjct: 346 WVEVDLPEKAPSIGSKWVFRRKLDSTGSVERYKARLVARGFGQKAGIDYSETNAPVVSLTVIRFLLSLSMQFGWHVRHVDVKSAYLYGKLAEEIYMKLPEGYEHTVGKVARLLRPIYGLKQSGRVWNETLTVFLEKLGFQRQWSSSCVYVSSNQ----IIIVVYVDDIL 510 The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig134273.2431.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_H-elongata_contig134273.2431.1 >prot_H-elongata_contig134273.2431.1 ID=prot_H-elongata_contig134273.2431.1|Name=mRNA_H-elongata_contig134273.2431.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=85bp MDGRIEKYKCRLVAQGSKTSIRMVLGMIAALGWEARQLDVDMAYLEAEVEback to top mRNA from alignment at H-elongata_contig134273:3..458- Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_H-elongata_contig134273.2431.1 ID=mRNA_H-elongata_contig134273.2431.1|Name=mRNA_H-elongata_contig134273.2431.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=456bp|location=Sequence derived from alignment at H-elongata_contig134273:3..458- (Himanthalia elongata Himel1 dioecious)back to top Coding sequence (CDS) from alignment at H-elongata_contig134273:3..458- >mRNA_H-elongata_contig134273.2431.1 ID=mRNA_H-elongata_contig134273.2431.1|Name=mRNA_H-elongata_contig134273.2431.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=510bp|location=Sequence derived from alignment at H-elongata_contig134273:3..458- (Himanthalia elongata Himel1 dioecious)back to top |