mRNA_H-elongata_contig13424.2429.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig13424.2429.1
Unique NamemRNA_H-elongata_contig13424.2429.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
[Close]
BLAST of mRNA_H-elongata_contig13424.2429.1 vs. uniprot
Match: D7FKD9_ECTSI (MutS protein homolog 5 n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FKD9_ECTSI)

HSP 1 Score: 74.7 bits (182), Expect = 2.590e-14
Identity = 35/53 (66.04%), Postives = 43/53 (81.13%), Query Frame = 1 
Query:    4 LKPFYDIGAINARQDGVEALMQVENAEVCKRLRYQLGKSHDMARILLRIKKAS 162
            LKP +DI AI+ RQDGVE LMQ ENAE+C+RLR QL KS+ M RI++RIKK +
Sbjct:  116 LKPLHDIAAISVRQDGVEVLMQAENAEICRRLRSQLSKSYGMTRIIMRIKKVA 168
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig13424.2429.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
D7FKD9_ECTSI2.590e-1466.04MutS protein homolog 5 n=1 Tax=Ectocarpus siliculo... [more]
back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig13424contigH-elongata_contig13424:3179..3612 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score75.1
Seed ortholog evalue1.1e-11
Seed eggNOG ortholog2880.D7FKD9
Preferred nameMSH5
KEGG koko:K08741
GOsGO:0000003,GO:0000228,GO:0000280,GO:0000710,GO:0000712,GO:0000793,GO:0000794,GO:0000795,GO:0003674,GO:0003676,GO:0003677,GO:0003690,GO:0003824,GO:0005488,GO:0005515,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005654,GO:0005694,GO:0006139,GO:0006259,GO:0006281,GO:0006298,GO:0006310,GO:0006725,GO:0006807,GO:0006950,GO:0006974,GO:0006996,GO:0007049,GO:0007059,GO:0007127,GO:0007129,GO:0007131,GO:0007276,GO:0007292,GO:0008094,GO:0008150,GO:0008152,GO:0009987,GO:0010777,GO:0016043,GO:0016462,GO:0016787,GO:0016817,GO:0016818,GO:0016887,GO:0017111,GO:0019953,GO:0022402,GO:0022414,GO:0022607,GO:0030983,GO:0031974,GO:0031981,GO:0032501,GO:0032504,GO:0033554,GO:0034641,GO:0035825,GO:0042623,GO:0043073,GO:0043170,GO:0043226,GO:0043227,GO:0043228,GO:0043229,GO:0043231,GO:0043232,GO:0043233,GO:0044085,GO:0044237,GO:0044238,GO:0044260,GO:0044422,GO:0044424,GO:0044427,GO:0044428,GO:0044446,GO:0044454,GO:0044464,GO:0044703,GO:0045132,GO:0045143,GO:0046483,GO:0048285,GO:0048609,GO:0050896,GO:0051026,GO:0051276,GO:0051304,GO:0051307,GO:0051321,GO:0051704,GO:0051716,GO:0061982,GO:0070013,GO:0070192,GO:0071704,GO:0071840,GO:0090304,GO:0097159,GO:0098813,GO:0099086,GO:0140013,GO:1901360,GO:1901363,GO:1903046
EggNOG free text desc.chiasma assembly
EggNOG OGsCOG0249@1,KOG0221@2759
COG Functional cat.L
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko03400
Hectar predicted targeting categoryno signal peptide or anchor
Exons2
Model size165
Cds size165
Stop1
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929797.5783477-CDS-H-elongata_contig13424:3178..32981622929797.5783477-CDS-H-elongata_contig13424:3178..3298Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig13424 3179..3298 -
1691679161.380543-CDS-H-elongata_contig13424:3178..32981691679161.380543-CDS-H-elongata_contig13424:3178..3298Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig13424 3179..3298 -
1622929797.5937915-CDS-H-elongata_contig13424:3567..36121622929797.5937915-CDS-H-elongata_contig13424:3567..3612Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig13424 3568..3612 -
1691679161.3942442-CDS-H-elongata_contig13424:3567..36121691679161.3942442-CDS-H-elongata_contig13424:3567..3612Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig13424 3568..3612 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig13424.2429.1prot_H-elongata_contig13424.2429.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig13424 3179..3612 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig13424.2429.1

>prot_H-elongata_contig13424.2429.1 ID=prot_H-elongata_contig13424.2429.1|Name=mRNA_H-elongata_contig13424.2429.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=55bp
FLKPFYDIGAINARQDGVEALMQVENAEVCKRLRYQLGKSHDMARILLRI
KKAS*
back to top

mRNA from alignment at H-elongata_contig13424:3179..3612-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig13424.2429.1 ID=mRNA_H-elongata_contig13424.2429.1|Name=mRNA_H-elongata_contig13424.2429.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=434bp|location=Sequence derived from alignment at H-elongata_contig13424:3179..3612- (Himanthalia elongata Himel1 dioecious)
TTTCTCAAGCCTTTCTACGATATCGGCGCCATCAATGCTCGGCAGGTACG
ACGCATCGGCACAGCAGAATAACTCGCCAACAACGCTCTTACAAGAACTG
TAAATGCTTTTGTGACCATCCCCAACGTGATACTGGGCATTCCACTAGAC
TGTTCAGCTTAAATGTTCCAAGCGTGGCTTGGTTTGAGACACCACCGCAA
GCTCCATGGGGCGAGCATTACGATCACCATCGAGAGAGTTACGGTTAAAA
GCAAGAAGGGCCTTAAACGACAAGCCTGAAACCCTACGTGTTATGGCACG
CCGTCGTCACCCAGGACGGCGTGGAGGCTTTGATGCAGGTAGAAAACGCG
GAGGTATGTAAGCGGCTTCGATACCAGCTCGGCAAGTCTCACGACATGGC
GCGAATCCTGCTGCGTATAAAAAAGGCGAGTTAA
back to top

Coding sequence (CDS) from alignment at H-elongata_contig13424:3179..3612-

>mRNA_H-elongata_contig13424.2429.1 ID=mRNA_H-elongata_contig13424.2429.1|Name=mRNA_H-elongata_contig13424.2429.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=330bp|location=Sequence derived from alignment at H-elongata_contig13424:3179..3612- (Himanthalia elongata Himel1 dioecious)
TTTCTCAAGCCTTTCTACGATATCGGCGCCATCAATGCTCGGCAGTTTCT
CAAGCCTTTCTACGATATCGGCGCCATCAATGCTCGGCAGGACGGCGTGG
AGGCTTTGATGCAGGTAGAAAACGCGGAGGTATGTAAGCGGCTTCGATAC
CAGCTCGGCAAGTCTCACGACATGGCGCGAATCCTGCTGCGTATAAAAAA
GGCGAGTTAAGACGGCGTGGAGGCTTTGATGCAGGTAGAAAACGCGGAGG
TATGTAAGCGGCTTCGATACCAGCTCGGCAAGTCTCACGACATGGCGCGA
ATCCTGCTGCGTATAAAAAAGGCGAGTTAA
back to top