mRNA_H-elongata_contig134203.2426.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig134203.2426.1
Unique NamemRNA_H-elongata_contig134203.2426.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig134203.2426.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig134203contigH-elongata_contig134203:1452..1586 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryno signal peptide or anchor
Ec32 ortholog descriptionHypothetical protein
Ec32 orthologEc-27_002890.1
Exons1
Model size135
Cds size108
Stop0
Start1
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929797.3217666-UTR-H-elongata_contig134203:1451..14781622929797.3217666-UTR-H-elongata_contig134203:1451..1478Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig134203 1452..1478 +
1691679161.27406-UTR-H-elongata_contig134203:1451..14781691679161.27406-UTR-H-elongata_contig134203:1451..1478Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig134203 1452..1478 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929797.3467994-CDS-H-elongata_contig134203:1478..15861622929797.3467994-CDS-H-elongata_contig134203:1478..1586Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig134203 1479..1586 +
1691679161.2815294-CDS-H-elongata_contig134203:1478..15861691679161.2815294-CDS-H-elongata_contig134203:1478..1586Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig134203 1479..1586 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig134203.2426.1prot_H-elongata_contig134203.2426.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig134203 1479..1586 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig134203.2426.1

>prot_H-elongata_contig134203.2426.1 ID=prot_H-elongata_contig134203.2426.1|Name=mRNA_H-elongata_contig134203.2426.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=36bp
MDVDTVKTKLKNSRYPHVEALFSDILLVYQNAVRYY
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mRNA from alignment at H-elongata_contig134203:1452..1586+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig134203.2426.1 ID=mRNA_H-elongata_contig134203.2426.1|Name=mRNA_H-elongata_contig134203.2426.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=135bp|location=Sequence derived from alignment at H-elongata_contig134203:1452..1586+ (Himanthalia elongata Himel1 dioecious)
GATTACGGTCAGATCGTGTTACGCAAGATGGACGTGGATACTGTGAAGAC
CAAACTAAAGAACTCTCGTTACCCGCACGTGGAAGCCTTGTTCAGCGACA
TACTCCTGGTGTATCAAAATGCCGTCAGATACTAC
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Coding sequence (CDS) from alignment at H-elongata_contig134203:1452..1586+

>mRNA_H-elongata_contig134203.2426.1 ID=mRNA_H-elongata_contig134203.2426.1|Name=mRNA_H-elongata_contig134203.2426.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=216bp|location=Sequence derived from alignment at H-elongata_contig134203:1452..1586+ (Himanthalia elongata Himel1 dioecious)
ATGGACGTGGATACTGTGAAGACCAAACTAAAGAACTCTCGTTACCCGCA
CGTGGAAGCCTTGTTCAGCGACATACTCCTGGTGTATCAAAATGCCGTCA
GATACTACATGGACGTGGATACTGTGAAGACCAAACTAAAGAACTCTCGT
TACCCGCACGTGGAAGCCTTGTTCAGCGACATACTCCTGGTGTATCAAAA
TGCCGTCAGATACTAC
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