prot_H-elongata_contig134169.2424.1 (polypeptide) Himanthalia elongata Himel1 dioecious

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview


Name	mRNA_H-elongata_contig134169.2424.1
Unique Name	prot_H-elongata_contig134169.2424.1
Type	polypeptide
Organism	Himanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Sequence length	101

Homology

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BLAST of mRNA_H-elongata_contig134169.2424.1 vs. uniprot
Match: A0A438GL78_VITVI (Retrovirus-related Pol polyprotein from transposon TNT 1-94 n=1 Tax=Vitis vinifera TaxID=29760 RepID=A0A438GL78_VITVI)

HSP 1 Score: 74.7 bits (182), Expect = 1.640e-13
Identity = 36/93 (38.71%), Postives = 58/93 (62.37%), Query Frame = 0

Query:    9 AEIPPVSVAGVMKFRYKGAWFWAMNEELKGLKESGTFKVLDGLPEGEKAIGSRWVLSYKEESDGNIKIPKVRRVSKGFMQREGVNYLQTSAPI 101
            AE  P S +  M  +    W+ AM +E+  ++ +  + +++ LP G K IG +WV   K++S GNI+I K R V+KGF Q+EG++Y +T +PI
Sbjct:  147 AENDPESFSQAMSCKESKLWYNAMKDEMSSMRCNDVWDLVE-LPNGVKTIGCKWVFKTKKDSSGNIEIYKARLVTKGFTQKEGIDYTETFSPI 238

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BLAST of mRNA_H-elongata_contig134169.2424.1 vs. uniprot
Match: A0A6H5JRB0_9PHAE (Reverse transcriptase Ty1/copia-type domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JRB0_9PHAE)

HSP 1 Score: 74.7 bits (182), Expect = 1.650e-13
Identity = 39/93 (41.94%), Postives = 56/93 (60.22%), Query Frame = 0

Query:    7 SEAEIPPVSVAGVMKFRYKGAWFWAMNEELKGLKESGTFKVLDGLPEGEKAIGSRWVLSYKEESDGNIKIPKVRRVSKGFMQREGVNYLQTSA 99
            S+ E  P++   VM  +YK  W  AM  E+ G  ++GTF  +  LPEG KAIGS+WVLS+K    G I   K R V++GF Q  G+++  +S+
Sbjct:  102 SDVEAVPMTYKDVMCSKYKVFWEAAMKNEIDGHDKTGTFTKVKELPEGRKAIGSKWVLSWKTSEKGLIVDFKARMVARGFSQIPGIDFHHSSS 194

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BLAST of mRNA_H-elongata_contig134169.2424.1 vs. uniprot
Match: A0A6H5K282_9PHAE (Reverse transcriptase Ty1/copia-type domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K282_9PHAE)

HSP 1 Score: 72.8 bits (177), Expect = 1.900e-13
Identity = 38/93 (40.86%), Postives = 55/93 (59.14%), Query Frame = 0

Query:    7 SEAEIPPVSVAGVMKFRYKGAWFWAMNEELKGLKESGTFKVLDGLPEGEKAIGSRWVLSYKEESDGNIKIPKVRRVSKGFMQREGVNYLQTSA 99
            S+ E  P++   VM  +YK  W  AM +E+ G  ++GTF  +  LPEG KAIGS+WV S+K    G I   K R V++GF Q  G+++   S+
Sbjct:  116 SDVEAVPMTYKDVMCSKYKVFWEAAMKKEIDGHDKTGTFTKVKELPEGRKAIGSKWVFSWKTNEKGLIVDFKARMVARGFSQIPGIDFHHLSS 208

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BLAST of mRNA_H-elongata_contig134169.2424.1 vs. uniprot
Match: A0A6H5KPX2_9PHAE (Reverse transcriptase Ty1/copia-type domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KPX2_9PHAE)

HSP 1 Score: 73.6 bits (179), Expect = 2.100e-13
Identity = 38/93 (40.86%), Postives = 56/93 (60.22%), Query Frame = 0

Query:    7 SEAEIPPVSVAGVMKFRYKGAWFWAMNEELKGLKESGTFKVLDGLPEGEKAIGSRWVLSYKEESDGNIKIPKVRRVSKGFMQREGVNYLQTSA 99
            S+ E  P++   VM  +YK  W  AM +E+ G  ++GTF  +  LPEG KAIGS+WV S+K    G I   K R V++GF Q  G+++  +S+
Sbjct:  102 SDVEAVPMTYKDVMCSKYKVFWEAAMKKEIDGHDKTGTFTKVKELPEGRKAIGSKWVFSWKTNEKGLIVDFKARMVARGFSQIPGIDFHHSSS 194

[Close]

BLAST of mRNA_H-elongata_contig134169.2424.1 vs. uniprot
Match: A0A6H5JXX7_9PHAE (Reverse transcriptase Ty1/copia-type domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JXX7_9PHAE)

HSP 1 Score: 74.3 bits (181), Expect = 2.240e-13
Identity = 38/93 (40.86%), Postives = 56/93 (60.22%), Query Frame = 0

Query:    7 SEAEIPPVSVAGVMKFRYKGAWFWAMNEELKGLKESGTFKVLDGLPEGEKAIGSRWVLSYKEESDGNIKIPKVRRVSKGFMQREGVNYLQTSA 99
            S+ E  P++   VM  +YK  W  AM +E+ G  ++GTF  +  LPEG KAIGS+WV S+K    G I   K R V++GF Q  G+++  +S+
Sbjct:  302 SDVEAVPMTYRDVMCSKYKVFWEAAMKKEIDGHDKTGTFTKVKELPEGRKAIGSKWVFSWKTNEKGLIVDFKARMVARGFSQIPGIDFYHSSS 394

[Close]

BLAST of mRNA_H-elongata_contig134169.2424.1 vs. uniprot
Match: A0A6H5K236_9PHAE (Reverse transcriptase Ty1/copia-type domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K236_9PHAE)

HSP 1 Score: 72.4 bits (176), Expect = 2.360e-13
Identity = 37/93 (39.78%), Postives = 57/93 (61.29%), Query Frame = 0

Query:    7 SEAEIPPVSVAGVMKFRYKGAWFWAMNEELKGLKESGTFKVLDGLPEGEKAIGSRWVLSYKEESDGNIKIPKVRRVSKGFMQREGVNYLQTSA 99
            S+ E  P++   VM  +YK  W  AM +E+ G  ++GTF  +  LPEG KAIGS+WV S+K +  G I   K R V++GF +  G+++  +S+
Sbjct:   10 SDVEAVPMTYKDVMCSKYKVFWEAAMKKEIDGHDKTGTFTKVKELPEGRKAIGSKWVFSWKTKEKGLIVDFKARMVARGFSRIPGIDFHHSSS 102

[Close]

BLAST of mRNA_H-elongata_contig134169.2424.1 vs. uniprot
Match: A0A6H5K3C5_9PHAE (Reverse transcriptase Ty1/copia-type domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K3C5_9PHAE)

HSP 1 Score: 73.9 bits (180), Expect = 3.100e-13
Identity = 38/93 (40.86%), Postives = 57/93 (61.29%), Query Frame = 0

Query:    7 SEAEIPPVSVAGVMKFRYKGAWFWAMNEELKGLKESGTFKVLDGLPEGEKAIGSRWVLSYKEESDGNIKIPKVRRVSKGFMQREGVNYLQTSA 99
            S+ E  P++   VM  +YK  W  AM +E+ G  ++GTF  +  LPEG KAIGS+WV S+K    G I   K R V++GF Q  G+++ ++S+
Sbjct:  452 SDVEAVPMTYKDVMCSKYKVFWEAAMKKEIDGHDKTGTFTKVKELPEGRKAIGSKWVFSWKTNEKGLIVDFKARMVARGFSQIPGIDFHRSSS 544

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BLAST of mRNA_H-elongata_contig134169.2424.1 vs. uniprot
Match: A0A6H5JJW3_9PHAE (Reverse transcriptase Ty1/copia-type domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JJW3_9PHAE)

HSP 1 Score: 73.6 bits (179), Expect = 3.460e-13
Identity = 38/93 (40.86%), Postives = 56/93 (60.22%), Query Frame = 0

Query:    7 SEAEIPPVSVAGVMKFRYKGAWFWAMNEELKGLKESGTFKVLDGLPEGEKAIGSRWVLSYKEESDGNIKIPKVRRVSKGFMQREGVNYLQTSA 99
            S+ E  P++   V+  +YK  W  AM EE+ G  ++GTF  +  LPEG KAIGS+WV S+K    G I   K R V++GF Q  G+++  +S+
Sbjct:   41 SDVEAVPMTYKDVICSKYKVFWEAAMEEEIDGHDKTGTFTKVKELPEGRKAIGSKWVFSWKTNEKGLIVDFKARMVARGFSQIPGIDFHHSSS 133

[Close]

BLAST of mRNA_H-elongata_contig134169.2424.1 vs. uniprot
Match: A0A6H5JUN0_9PHAE (Reverse transcriptase Ty1/copia-type domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JUN0_9PHAE)

HSP 1 Score: 73.6 bits (179), Expect = 3.840e-13
Identity = 38/93 (40.86%), Postives = 57/93 (61.29%), Query Frame = 0

Query:    7 SEAEIPPVSVAGVMKFRYKGAWFWAMNEELKGLKESGTFKVLDGLPEGEKAIGSRWVLSYKEESDGNIKIPKVRRVSKGFMQREGVNYLQTSA 99
            S+ E  P++   VM  +YK  W  AM +E+ G  ++GTF  +  LPEG KAIGS+WV S+K    G I   K R V++GF Q  G+++ ++S+
Sbjct:   10 SDVEAVPMTYKDVMCSKYKVFWETAMKKEIDGHDKTGTFTKVKELPEGRKAIGSKWVFSWKTNEKGLILDFKARVVARGFSQIPGIDFHRSSS 102

[Close]

BLAST of mRNA_H-elongata_contig134169.2424.1 vs. uniprot
Match: A0A6H5K1I0_9PHAE (Reverse transcriptase Ty1/copia-type domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K1I0_9PHAE)

HSP 1 Score: 73.6 bits (179), Expect = 4.320e-13
Identity = 38/93 (40.86%), Postives = 56/93 (60.22%), Query Frame = 0

Query:    7 SEAEIPPVSVAGVMKFRYKGAWFWAMNEELKGLKESGTFKVLDGLPEGEKAIGSRWVLSYKEESDGNIKIPKVRRVSKGFMQREGVNYLQTSA 99
            S+ E  P++   VM  +YK  W  AM +E+ G  ++GTF  +  LPEG KAIGS+WV S+K    G I   K R V++GF Q  G+++  +S+
Sbjct:  353 SDVEAVPMTYKDVMCSKYKVFWEAAMKKEIDGHDKTGTFTKVKELPEGRKAIGSKWVFSWKTNEKGLIVDFKARMVARGFSQIPGIDFHHSSS 445

The following BLAST results are available for this feature:

BLAST of mRNA_H-elongata_contig134169.2424.1 vs. uniprot

BLAST of mRNA_H-elongata_contig134169.2424.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 25


Match Name	E-value	Identity	Description
A0A438GL78_VITVI	1.640e-13	38.71	Retrovirus-related Pol polyprotein from transposon...	[more]
A0A6H5JRB0_9PHAE	1.650e-13	41.94	Reverse transcriptase Ty1/copia-type domain-contai...	[more]
A0A6H5K282_9PHAE	1.900e-13	40.86	Reverse transcriptase Ty1/copia-type domain-contai...	[more]
A0A6H5KPX2_9PHAE	2.100e-13	40.86	Reverse transcriptase Ty1/copia-type domain-contai...	[more]
A0A6H5JXX7_9PHAE	2.240e-13	40.86	Reverse transcriptase Ty1/copia-type domain-contai...	[more]
A0A6H5K236_9PHAE	2.360e-13	39.78	Reverse transcriptase Ty1/copia-type domain-contai...	[more]
A0A6H5K3C5_9PHAE	3.100e-13	40.86	Reverse transcriptase Ty1/copia-type domain-contai...	[more]
A0A6H5JJW3_9PHAE	3.460e-13	40.86	Reverse transcriptase Ty1/copia-type domain-contai...	[more]
A0A6H5JUN0_9PHAE	3.840e-13	40.86	Reverse transcriptase Ty1/copia-type domain-contai...	[more]
A0A6H5K1I0_9PHAE	4.320e-13	40.86	Reverse transcriptase Ty1/copia-type domain-contai...	[more]

Pages

InterPro

Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR013103	Reverse transcriptase, RNA-dependent DNA polymerase	PFAM	PF07727	RVT_2	coord: 45..101 e-value: 1.1E-8 score: 35.0
IPR039537	Retrotransposon Ty1/copia-like	PANTHER	PTHR11439	GAG-POL-RELATED RETROTRANSPOSON	coord: 27..100
None	No IPR available	PANTHER	PTHR11439:SF273		coord: 27..100

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
H-elongata_contig134169	contig	H-elongata_contig134169:242..544 -

Analyses

This polypeptide is derived from or has results from the following analyses


Analysis Name	Date Performed
InterProScan on OGS1.0	2022-09-29
Diamond blastp: OGS1.0 vs UniRef90	2022-09-16
OGS1.0 of Himanthalia elongata Himel1 dioecious	2021-02-24

Relationships

This polypeptide derives from the following mRNA feature(s):


Feature Name	Unique Name	Species	Type	Position
mRNA_H-elongata_contig134169.2424.1	mRNA_H-elongata_contig134169.2424.1	Himanthalia elongata Himel1 dioecious	mRNA	H-elongata_contig134169 242..553 -

Sequences

The following sequences are available for this feature:

polypeptide sequence

polypeptide sequence

>prot_H-elongata_contig134169.2424.1 ID=prot_H-elongata_contig134169.2424.1|Name=mRNA_H-elongata_contig134169.2424.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=101bp
MPSGPVSEAEIPPVSVAGVMKFRYKGAWFWAMNEELKGLKESGTFKVLDG
LPEGEKAIGSRWVLSYKEESDGNIKIPKVRRVSKGFMQREGVNYLQTSAP
I

Annotated Terms

The following terms have been associated with this polypeptide:

Vocabulary: **INTERPRO**
Term	Definition
IPR013103	RVT_2
IPR039537	Retrotran_Ty1/copia-like