mRNA_H-elongata_contig134156.2423.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig134156.2423.1
Unique NamemRNA_H-elongata_contig134156.2423.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
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BLAST of mRNA_H-elongata_contig134156.2423.1 vs. uniprot
Match: D8LDB0_ECTSI (C2H2 zinc finger protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LDB0_ECTSI)

HSP 1 Score: 86.3 bits (212), Expect = 2.170e-18
Identity = 45/64 (70.31%), Postives = 53/64 (82.81%), Query Frame = 1 
Query:    1 QVAFSDVTVQDLPPTGVDDLSVKFIRLSQLTIEYLLHVQE---GYIQSLVRRLEAATERSQRLE 183
            +VAF +V+ +D+PPTGVDDLSVK IRLSQLTIEYLLHVQE   GYIQ LVR+LE A   +QRL+
Sbjct:   54 EVAFCEVSAEDIPPTGVDDLSVKLIRLSQLTIEYLLHVQECQEGYIQGLVRQLETANNNNQRLK 117
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig134156.2423.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
D8LDB0_ECTSI2.170e-1870.31C2H2 zinc finger protein n=1 Tax=Ectocarpus silicu... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig134156contigH-elongata_contig134156:402..1441 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Ec32 ortholog descriptionC2H2 zinc finger protein
Ec32 orthologEc-25_001890.1
Exons2
Model size183
Cds size183
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929797.1097643-CDS-H-elongata_contig134156:401..4731622929797.1097643-CDS-H-elongata_contig134156:401..473Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig134156 402..473 -
1691679161.204001-CDS-H-elongata_contig134156:401..4731691679161.204001-CDS-H-elongata_contig134156:401..473Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig134156 402..473 -
1622929797.125857-CDS-H-elongata_contig134156:1330..14411622929797.125857-CDS-H-elongata_contig134156:1330..1441Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig134156 1331..1441 -
1691679161.215176-CDS-H-elongata_contig134156:1330..14411691679161.215176-CDS-H-elongata_contig134156:1330..1441Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig134156 1331..1441 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig134156.2423.1prot_H-elongata_contig134156.2423.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig134156 402..1441 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig134156.2423.1

>prot_H-elongata_contig134156.2423.1 ID=prot_H-elongata_contig134156.2423.1|Name=mRNA_H-elongata_contig134156.2423.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=61bp
QVAFSDVTVQDLPPTGVDDLSVKFIRLSQLTIEYLLHVQEGYIQSLVRRL
EAATERSQRLE
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mRNA from alignment at H-elongata_contig134156:402..1441-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig134156.2423.1 ID=mRNA_H-elongata_contig134156.2423.1|Name=mRNA_H-elongata_contig134156.2423.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=1040bp|location=Sequence derived from alignment at H-elongata_contig134156:402..1441- (Himanthalia elongata Himel1 dioecious)
CAGGTGGCGTTTTCCGATGTTACCGTACAGGATTTGCCGCCAACCGGGGT
GGATGACCTTTCGGTGAAGTTTATACGGCTGTCACAGCTAACAATCGAAT
ACCTGCTGCACGTACAGGCGAGTCGCTGTTCGAGAGGCATCATCGCGTTG
GGTTGTTGTTGGGATATCATTAGGGCGTTTGGGCCAATCCCCAGCTACCG
CAACTGCCACCCTCGTTTGTTTGCGGTTTGCTGAAAAGGAGAAGGGGGGG
TGGGGAATAAGATTCGTAAGGAAAATGATTACCCCGTTGTATTAACAACA
ACAACAGTATATAGTAGAAGTATATATAGTAGAAATAGGACGAGGGCGAG
AGGAGGAAGATTGGGTGAGAATATGTGCCGTTCAACGGCACCATCACCGG
TCTCTGTCTCTACCTGTTTCACCGAGTTTGCCCTTTGGGTTGGTACGATA
GAAGATGCTTGAACGGCTGGCGGACCTATAGCAGTCTCGTTCAACGGCAA
AATAACCGCTCTCGTCGTGACGTCCACTTGCCCACAAAGAGCGGGAATAA
TGTGGAAAGGCACTTCGAAAAAGAAAAGTATGATGAGCCGCGCGAGGTGG
AGAGAGTGGGGAAGTTGACGTCATCATAATCCGCGCGCGCGCGCGCGTAG
ACTACTCTTATGAGTATATGCTTAATGAAGGACACACGTATACAATATGC
TGTCACTCTCGAGTCCGGCTGCAACCATTGATTGGTTTTATAATCCCGGG
CAGGAGACAGGAAGCATTCTGGTTCGGAAAACAGGGAAATTAATTCTAGT
AATAACGAGCAATATAATATAGAGATGTTATCTCCCGCACGTCCTGCAAA
CGTTTTTTTGCGAATGTAGACTGCGAGTGTTCACGTTCAAAAGCTGACGG
CCAAAAGTCATCGTCTTGGGTGTGAGATGGTTTTATATTCGCTGCATCGT
GTCGGCATCTATCAGGAGGTTCAGGAGGGCTACATTCAGAGCCTTGTTCG
GCGGCTGGAGGCTGCCACGGAGCGTTCACAACGCTTGGAG
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Coding sequence (CDS) from alignment at H-elongata_contig134156:402..1441-

>mRNA_H-elongata_contig134156.2423.1 ID=mRNA_H-elongata_contig134156.2423.1|Name=mRNA_H-elongata_contig134156.2423.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=366bp|location=Sequence derived from alignment at H-elongata_contig134156:402..1441- (Himanthalia elongata Himel1 dioecious)
CAGGTGGCGTTTTCCGATGTTACCGTACAGGATTTGCCGCCAACCGGGGT
GGATGACCTTTCGGTGAAGTTTATACGGCTGTCACAGCTAACAATCGAAT
ACCTGCTGCACCAGGTGGCGTTTTCCGATGTTACCGTACAGGATTTGCCG
CCAACCGGGGTGGATGACCTTTCGGTGAAGTTTATACGGCTGTCACAGCT
AACAATCGAATACCTGCTGCACGTTCAGGAGGGCTACATTCAGAGCCTTG
TTCGGCGGCTGGAGGCTGCCACGGAGCGTTCACAACGCTTGGAGGTTCAG
GAGGGCTACATTCAGAGCCTTGTTCGGCGGCTGGAGGCTGCCACGGAGCG
TTCACAACGCTTGGAG
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