mRNA_H-elongata_contig134095.2420.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig134095.2420.1
Unique NamemRNA_H-elongata_contig134095.2420.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
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BLAST of mRNA_H-elongata_contig134095.2420.1 vs. uniprot
Match: A0A6H5KFQ5_9PHAE (Peptidase A1 domain-containing protein n=2 Tax=Ectocarpus TaxID=2879 RepID=A0A6H5KFQ5_9PHAE)

HSP 1 Score: 78.6 bits (192), Expect = 1.300e-12
Identity = 67/158 (42.41%), Postives = 74/158 (46.84%), Query Frame = 1 
Query:  409 LVHRRIRRGKTHRHTPLGDCAQEKASGNLEMSSNGGSTAALGGAIVAGAEDDFLQARPGGYRGSGSGSHRYRVAEAGVGTDGGSNAQAVTVLGTL-------GEEDXXXXXXEVVEVDFGVSNNDASAAAPMGR--LSKIFGRGRTGFTAFRDGEESG 855
            LV RRIRRG+ HRHT             LEM   GG     GG +V GAEDDFLQA PGGYR +GSGSHRYRVA                            GE D      + VEVDFGVS   A +  P G   L ++FGR   GF A  D    G
Sbjct:  590 LVVRRIRRGE-HRHT------------KLEMGRAGG-----GGKVVEGAEDDFLQAGPGGYRDNGSGSHRYRVAAXXXXXXXXXXXXXXXXXXXXXXXXXXXGELD------DEVEVDFGVSRATAGSGTPSGGGPLGRMFGRPGEGFAALGDDHRQG 723
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig134095.2420.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
A0A6H5KFQ5_9PHAE1.300e-1242.41Peptidase A1 domain-containing protein n=2 Tax=Ect... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig134095contigH-elongata_contig134095:258..1130 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score100.9
Seed ortholog evalue1e-18
Seed eggNOG ortholog2880.D7FJG5
KEGG koko:K01378,ko:K01379,ko:K06002,ko:K08245
KEGG Pathwayko04071,ko04140,ko04142,ko04210,ko04915,ko04974,ko05152,map04071,map04140,map04142,map04210,map04915,map04974,map05152
EggNOG free text desc.aspartic-type endopeptidase activity
EggNOG OGsKOG1339@1,KOG1339@2759
EC3.4.23.1,3.4.23.4,3.4.23.40,3.4.23.5
COG Functional cat.M
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko01000,ko01002,ko04147
Hectar predicted targeting categoryother localisation
Exons1
Model size873
Cds size873
Stop1
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929796.8914235-CDS-H-elongata_contig134095:257..11301622929796.8914235-CDS-H-elongata_contig134095:257..1130Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig134095 258..1130 +
1691679161.148742-CDS-H-elongata_contig134095:257..11301691679161.148742-CDS-H-elongata_contig134095:257..1130Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig134095 258..1130 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig134095.2420.1prot_H-elongata_contig134095.2420.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig134095 258..1130 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig134095.2420.1

>prot_H-elongata_contig134095.2420.1 ID=prot_H-elongata_contig134095.2420.1|Name=mRNA_H-elongata_contig134095.2420.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=291bp
ILGDSFLRTFYTAYDVEEKKVGLAKATSNRAGSTCSEDDSISASGGLSDE
DSISTSVASFDKDDDSTDTTNVRAADHEASSSSTNSTSDGDEGIQQVKDN
DTKPGQGVEESSWIAVAATTSFLTLIVLLTCCGVGVLVHRRIRRGKTHRH
TPLGDCAQEKASGNLEMSSNGGSTAALGGAIVAGAEDDFLQARPGGYRGS
GSGSHRYRVAEAGVGTDGGSNAQAVTVLGTLGEEDEEEDDDEVVEVDFGV
SNNDASAAAPMGRLSKIFGRGRTGFTAFRDGEESGSTFTA*
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mRNA from alignment at H-elongata_contig134095:258..1130+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig134095.2420.1 ID=mRNA_H-elongata_contig134095.2420.1|Name=mRNA_H-elongata_contig134095.2420.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=873bp|location=Sequence derived from alignment at H-elongata_contig134095:258..1130+ (Himanthalia elongata Himel1 dioecious)
ATCCTGGGCGACTCTTTCCTCCGCACGTTCTATACCGCTTACGACGTCGA
AGAGAAGAAGGTCGGGCTCGCCAAAGCCACGTCCAACCGTGCCGGCAGCA
CGTGCAGCGAAGACGACTCCATCTCCGCCAGCGGTGGCCTTTCCGACGAG
GATTCCATATCCACCAGCGTCGCTTCTTTCGACAAAGACGACGATTCCAC
CGACACCACGAACGTCAGAGCGGCAGATCACGAAGCCTCATCGAGCTCAA
CGAACTCGACAAGCGATGGCGACGAAGGAATCCAGCAAGTCAAGGACAAC
GATACTAAACCGGGCCAAGGCGTGGAAGAGTCGAGCTGGATCGCGGTGGC
GGCAACCACCTCGTTCCTGACGCTAATCGTGTTGTTAACATGCTGCGGGG
TGGGGGTGCTGGTGCACCGGCGCATCAGGAGGGGGAAGACGCACCGCCAT
ACTCCGCTCGGCGACTGCGCACAAGAAAAAGCCAGCGGCAACTTGGAGAT
GTCGAGCAATGGGGGCAGTACCGCCGCCTTGGGGGGCGCGATTGTGGCCG
GCGCGGAGGACGATTTTTTGCAGGCGCGCCCTGGTGGCTACCGAGGCAGC
GGGTCGGGATCTCACCGCTATCGCGTCGCCGAGGCGGGGGTGGGAACCGA
TGGTGGCAGCAACGCCCAGGCAGTCACTGTCCTTGGGACCCTCGGCGAAG
AGGATGAGGAAGAGGATGACGATGAAGTGGTGGAGGTTGACTTCGGGGTT
TCTAACAATGACGCGAGCGCGGCAGCTCCGATGGGACGGCTTAGTAAGAT
CTTCGGCCGAGGGAGGACAGGTTTCACCGCGTTCCGAGACGGGGAGGAGT
CCGGATCGACGTTCACCGCGTGA
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Coding sequence (CDS) from alignment at H-elongata_contig134095:258..1130+

>mRNA_H-elongata_contig134095.2420.1 ID=mRNA_H-elongata_contig134095.2420.1|Name=mRNA_H-elongata_contig134095.2420.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=1746bp|location=Sequence derived from alignment at H-elongata_contig134095:258..1130+ (Himanthalia elongata Himel1 dioecious)
ATCCTGGGCGACTCTTTCCTCCGCACGTTCTATACCGCTTACGACGTCGA
AGAGAAGAAGGTCGGGCTCGCCAAAGCCACGTCCAACCGTGCCGGCAGCA
CGTGCAGCGAAGACGACTCCATCTCCGCCAGCGGTGGCCTTTCCGACGAG
GATTCCATATCCACCAGCGTCGCTTCTTTCGACAAAGACGACGATTCCAC
CGACACCACGAACGTCAGAGCGGCAGATCACGAAGCCTCATCGAGCTCAA
CGAACTCGACAAGCGATGGCGACGAAGGAATCCAGCAAGTCAAGGACAAC
GATACTAAACCGGGCCAAGGCGTGGAAGAGTCGAGCTGGATCGCGGTGGC
GGCAACCACCTCGTTCCTGACGCTAATCGTGTTGTTAACATGCTGCGGGG
TGGGGGTGCTGGTGCACCGGCGCATCAGGAGGGGGAAGACGCACCGCCAT
ACTCCGCTCGGCGACTGCGCACAAGAAAAAGCCAGCGGCAACTTGGAGAT
GTCGAGCAATGGGGGCAGTACCGCCGCCTTGGGGGGCGCGATTGTGGCCG
GCGCGGAGGACGATTTTTTGCAGGCGCGCCCTGGTGGCTACCGAGGCAGC
GGGTCGGGATCTCACCGCTATCGCGTCGCCGAGGCGGGGGTGGGAACCGA
TGGTGGCAGCAACGCCCAGGCAGTCACTGTCCTTGGGACCCTCGGCGAAG
AGGATGAGGAAGAGGATGACGATGAAGTGGTGGAGGTTGACTTCGGGGTT
TCTAACAATGACGCGAGCGCGGCAGCTCCGATGGGACGGCTTAGTAAGAT
CTTCGGCCGAGGGAGGACAGGTTTCACCGCGTTCCGAGACGGGGAGGAGT
CCGGATCGACGTTCACCGCGTGAATCCTGGGCGACTCTTTCCTCCGCACG
TTCTATACCGCTTACGACGTCGAAGAGAAGAAGGTCGGGCTCGCCAAAGC
CACGTCCAACCGTGCCGGCAGCACGTGCAGCGAAGACGACTCCATCTCCG
CCAGCGGTGGCCTTTCCGACGAGGATTCCATATCCACCAGCGTCGCTTCT
TTCGACAAAGACGACGATTCCACCGACACCACGAACGTCAGAGCGGCAGA
TCACGAAGCCTCATCGAGCTCAACGAACTCGACAAGCGATGGCGACGAAG
GAATCCAGCAAGTCAAGGACAACGATACTAAACCGGGCCAAGGCGTGGAA
GAGTCGAGCTGGATCGCGGTGGCGGCAACCACCTCGTTCCTGACGCTAAT
CGTGTTGTTAACATGCTGCGGGGTGGGGGTGCTGGTGCACCGGCGCATCA
GGAGGGGGAAGACGCACCGCCATACTCCGCTCGGCGACTGCGCACAAGAA
AAAGCCAGCGGCAACTTGGAGATGTCGAGCAATGGGGGCAGTACCGCCGC
CTTGGGGGGCGCGATTGTGGCCGGCGCGGAGGACGATTTTTTGCAGGCGC
GCCCTGGTGGCTACCGAGGCAGCGGGTCGGGATCTCACCGCTATCGCGTC
GCCGAGGCGGGGGTGGGAACCGATGGTGGCAGCAACGCCCAGGCAGTCAC
TGTCCTTGGGACCCTCGGCGAAGAGGATGAGGAAGAGGATGACGATGAAG
TGGTGGAGGTTGACTTCGGGGTTTCTAACAATGACGCGAGCGCGGCAGCT
CCGATGGGACGGCTTAGTAAGATCTTCGGCCGAGGGAGGACAGGTTTCAC
CGCGTTCCGAGACGGGGAGGAGTCCGGATCGACGTTCACCGCGTGA
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