mRNA_H-elongata_contig134047.2418.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig134047.2418.1
Unique NamemRNA_H-elongata_contig134047.2418.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
[Close]
BLAST of mRNA_H-elongata_contig134047.2418.1 vs. uniprot
Match: A0A6H5KY59_9PHAE (DRBM domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KY59_9PHAE)

HSP 1 Score: 130 bits (328), Expect = 1.120e-32
Identity = 74/139 (53.24%), Postives = 90/139 (64.75%), Query Frame = 1 
Query:    1 ASPEFELITVARDHTEYVCTIMIGPKDRVKGHGRATNMKAARQEASRMLLKAREGRWGWGGACQCNAAIAWNEENPEDPIDMETMEVAPYTAPNKRMKAQ-EEITEEFKAYVAAWVDKVVLGEIDEACFSGVLDKQQRK 414
            A  ++E IT      EY+CTI +GP+DR+ G GRA N+KAA+Q+ASR LL               NAA+AWNEENPED IDMETM   P  A +K+ KA   EITEEFKAY AAWVDKVV  ++ EACF   + K +RK
Sbjct:  368 APADYEQITGEDGQAEYLCTISVGPEDRIVGRGRAPNIKAAKQQASRELLT--------------NAALAWNEENPEDLIDMETMVPLPDEAVSKKSKAAVTEITEEFKAYCAAWVDKVVSEDVHEACFPDGIGKGERK 492
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig134047.2418.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
A0A6H5KY59_9PHAE1.120e-3253.24DRBM domain-containing protein n=1 Tax=Ectocarpus ... [more]
back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig134047contigH-elongata_contig134047:98..1635 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Ec32 ortholog descriptionElongated TPR repeat-containing domain
Ec32 orthologEc-03_001220.1
Exons3
Model size438
Cds size438
Stop1
Start0
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig134047.2418.1prot_H-elongata_contig134047.2418.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig134047 98..1635 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929796.6284506-CDS-H-elongata_contig134047:97..2921622929796.6284506-CDS-H-elongata_contig134047:97..292Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig134047 98..292 +
1691679161.0614216-CDS-H-elongata_contig134047:97..2921691679161.0614216-CDS-H-elongata_contig134047:97..292Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig134047 98..292 +
1622929796.6408603-CDS-H-elongata_contig134047:754..8331622929796.6408603-CDS-H-elongata_contig134047:754..833Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig134047 755..833 +
1691679161.069091-CDS-H-elongata_contig134047:754..8331691679161.069091-CDS-H-elongata_contig134047:754..833Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig134047 755..833 +
1622929796.651263-CDS-H-elongata_contig134047:1471..16351622929796.651263-CDS-H-elongata_contig134047:1471..1635Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig134047 1472..1635 +
1691679161.0777242-CDS-H-elongata_contig134047:1471..16351691679161.0777242-CDS-H-elongata_contig134047:1471..1635Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig134047 1472..1635 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig134047.2418.1

>prot_H-elongata_contig134047.2418.1 ID=prot_H-elongata_contig134047.2418.1|Name=mRNA_H-elongata_contig134047.2418.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=146bp
ASPEFELITVARDHTEYVCTIMIGPKDRVKGHGRATNMKAARQEASRMLL
KAREGRWGWGGACQCNAAIAWNEENPEDPIDMETMEVAPYTAPNKRMKAQ
EEITEEFKAYVAAWVDKVVLGEIDEACFSGVLDKQQRKVRVVWFL*
back to top

mRNA from alignment at H-elongata_contig134047:98..1635+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig134047.2418.1 ID=mRNA_H-elongata_contig134047.2418.1|Name=mRNA_H-elongata_contig134047.2418.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=1538bp|location=Sequence derived from alignment at H-elongata_contig134047:98..1635+ (Himanthalia elongata Himel1 dioecious)
GCTTCCCCCGAGTTCGAGCTGATTACCGTAGCTCGGGATCATACGGAGTA
CGTATGCACGATCATGATCGGGCCGAAGGATAGGGTGAAGGGGCACGGAC
GGGCGACCAATATGAAGGCGGCCAGGCAGGAGGCTTCACGTATGCTGTTG
AAGGCGAGGGAAGGGCGGTGGGGGTGGGGGGGGGCGTGTCAGTGTGTCTT
TCGCGGCCGGTCATCCTCCTTGCGGTGACTGAAAAGTTTTCCGCTGTTGT
GCGCGTTTGCTGTCCTTCCTTCGGGGATGTTCGTTTCCCACTTTTGAGAG
TGCCGAATACAGCCGAAGGAGTTCAATATAGAGAGGCGGTTGTACCGACG
ATGCCTCATACATCTAACAAGAGCAGCAAGAAGCACCCCCGTCCCCACAC
GCCTCGCCCTAGATAATATACAATGCGTGATATGCCGGTGGATTCTCGGT
GGTGGTAACGCTATCGGTACTAGCGATTGCGTGACCTGATGAAATCGGGA
TTGGCCCGATGGCGGTTGACGGTAGATATGGATGCTGTCGCGGAAAACGG
GAGGATCGCGAGGATCCCTGGAGTAAGCACCAGATCCAGCCTGGGTAACC
AACTCCGGTGGATCTCTACTCTGCTGCTCTTATGTATAACTTGTTTTTAA
AAATCAGAATGCCGCCATCGCGTGGAATGAAGAAAATCCCGAGGACCCAA
TCGACATGGAGACCATGGAGGTGGCGCCCTACACGGGTGGGTTTCGTACG
TAAAATTGGGGGATTTTATTGGAAGTGGTGTTGTTTGGCTTTTCGTATTC
TGTTGATGCGCGGGATCGGAATCGGCGGCGCTGAGTCGATACCAGGGGGG
AACCGAAGCCAGAGCCAGATATGGAGAGAACCGCGTGGCGTTTGTGCATA
TGTTGAAGGTGTGTCGTATCTTAGTGGGCGAAGCGATAGATGACGGCCGT
ATTTTCACCGACCAGGGGTTGCGTTTCACAATGGATGATAACTAAAATTG
TCGGTTGAGACAGGTTCTTGACACAGCGCGTCAAGGCGTCGTTTTGGAAA
GTATACTAGTTTTAGTGCTTGGACGTGGTCCTTGACGCATCTATCAAGAA
GTTCAATTCAACTCTTGCCAACCGATAACTATGAATGATAACTATAGATC
TTTTAGTCGTCCCCCCTTCGCTTGCTACATGAAATAGAGCTTGTCATGGG
TTAATTGGGCACACACGCACACACCAGGTAGCCAAATGCTTGCGCACATT
TAGCGGGTGCGGCTGTACTATTCCAGAGATTGGTGGGTAAAAGGGGGGGA
GGGCGAGGCGTACTCCAGTTGAGTGTGTCGAGGGTTAATATTTGGCAAAA
TTGAATGATGGAATTGTCGCGCAGCGCCCAACAAGCGAATGAAGGCCCAG
GAGGAGATCACAGAGGAGTTCAAGGCCTACGTGGCGGCGTGGGTGGACAA
GGTGGTTCTCGGCGAGATCGACGAGGCGTGTTTTAGCGGGGTACTCGATA
AGCAGCAGCGCAAGGTGCGCGTTGTTTGGTTTTTATAA
back to top

Coding sequence (CDS) from alignment at H-elongata_contig134047:98..1635+

>mRNA_H-elongata_contig134047.2418.1 ID=mRNA_H-elongata_contig134047.2418.1|Name=mRNA_H-elongata_contig134047.2418.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=876bp|location=Sequence derived from alignment at H-elongata_contig134047:98..1635+ (Himanthalia elongata Himel1 dioecious)
GCTTCCCCCGAGTTCGAGCTGATTACCGTAGCTCGGGATCATACGGAGTA
CGTATGCACGATCATGATCGGGCCGAAGGATAGGGTGAAGGGGCACGGAC
GGGCGACCAATATGAAGGCGGCCAGGCAGGAGGCTTCACGTATGCTGTTG
AAGGCGAGGGAAGGGCGGTGGGGGTGGGGGGGGGCGTGTCAGTGTGCTTC
CCCCGAGTTCGAGCTGATTACCGTAGCTCGGGATCATACGGAGTACGTAT
GCACGATCATGATCGGGCCGAAGGATAGGGTGAAGGGGCACGGACGGGCG
ACCAATATGAAGGCGGCCAGGCAGGAGGCTTCACGTATGCTGTTGAAGGC
GAGGGAAGGGCGGTGGGGGTGGGGGGGGGCGTGTCAGTGTAATGCCGCCA
TCGCGTGGAATGAAGAAAATCCCGAGGACCCAATCGACATGGAGACCATG
GAGGTGGCGCCCTACACGGAATGCCGCCATCGCGTGGAATGAAGAAAATC
CCGAGGACCCAATCGACATGGAGACCATGGAGGTGGCGCCCTACACGGCG
CCCAACAAGCGAATGAAGGCCCAGGAGGAGATCACAGAGGAGTTCAAGGC
CTACGTGGCGGCGTGGGTGGACAAGGTGGTTCTCGGCGAGATCGACGAGG
CGTGTTTTAGCGGGGTACTCGATAAGCAGCAGCGCAAGGTGCGCGTTGTT
TGGTTTTTATAACGCCCAACAAGCGAATGAAGGCCCAGGAGGAGATCACA
GAGGAGTTCAAGGCCTACGTGGCGGCGTGGGTGGACAAGGTGGTTCTCGG
CGAGATCGACGAGGCGTGTTTTAGCGGGGTACTCGATAAGCAGCAGCGCA
AGGTGCGCGTTGTTTGGTTTTTATAA
back to top