mRNA_H-elongata_contig13402.2415.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig13402.2415.1
Unique NamemRNA_H-elongata_contig13402.2415.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
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BLAST of mRNA_H-elongata_contig13402.2415.1 vs. uniprot
Match: D7FWT5_ECTSI (Geranylgeranyl pyrophosphate synthase, chloroplast n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FWT5_ECTSI)

HSP 1 Score: 171 bits (434), Expect = 1.300e-51
Identity = 86/101 (85.15%), Postives = 90/101 (89.11%), Query Frame = 1 
Query:   13 AMRYSLMAGGKRVRPVLTIAACEMFGGSMEMAMPTAVSTEMIHTMSLIHDDLPAMDDDDLRRRGLLNSWNMGMPTCHVKFGEDIAILAGDALLSKSFEHCA 315
            ++ YSLMAGGKRVRP+LTIAACEMFGGSME AMPTAVSTEMIHTMSLIHDDLPAMDDDDLRR         GMPTCHVK+GEDIAILAGDALLSKSFEHCA
Sbjct:  144 SIHYSLMAGGKRVRPILTIAACEMFGGSMEAAMPTAVSTEMIHTMSLIHDDLPAMDDDDLRR---------GMPTCHVKYGEDIAILAGDALLSKSFEHCA 235
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BLAST of mRNA_H-elongata_contig13402.2415.1 vs. uniprot
Match: A0A7S2FLB2_9STRA (Hypothetical protein n=1 Tax=Dictyocha speculum TaxID=35687 RepID=A0A7S2FLB2_9STRA)

HSP 1 Score: 157 bits (397), Expect = 5.440e-45
Identity = 76/105 (72.38%), Postives = 89/105 (84.76%), Query Frame = 1 
Query:    1 KICEAMRYSLMAGGKRVRPVLTIAACEMFGGSMEMAMPTAVSTEMIHTMSLIHDDLPAMDDDDLRRRGLLNSWNMGMPTCHVKFGEDIAILAGDALLSKSFEHCA 315
            ++ E+MRYSLMAGGKR+RP++ IAACEMFGGS ++AMPTAV+ EMIHTMSL+HDDLPAMDDDDLRR         G+PT HV +GEDIAILAGDALLS +FEHCA
Sbjct:   83 EVTESMRYSLMAGGKRIRPIMAIAACEMFGGSQDVAMPTAVAVEMIHTMSLVHDDLPAMDDDDLRR---------GVPTNHVVYGEDIAILAGDALLSTAFEHCA 178
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BLAST of mRNA_H-elongata_contig13402.2415.1 vs. uniprot
Match: A0A7S3YD71_9EUKA (Hypothetical protein n=2 Tax=Lotharella globosa TaxID=91324 RepID=A0A7S3YD71_9EUKA)

HSP 1 Score: 155 bits (393), Expect = 4.490e-44
Identity = 79/105 (75.24%), Postives = 87/105 (82.86%), Query Frame = 1 
Query:    1 KICEAMRYSLMAGGKRVRPVLTIAACEMFGGSMEMAMPTAVSTEMIHTMSLIHDDLPAMDDDDLRRRGLLNSWNMGMPTCHVKFGEDIAILAGDALLSKSFEHCA 315
            KIC+AMRYSL+AGGKRVRP L IAACEM GG+ EM MP+AV+ EMIHTMSLIHDDLPAMD+DDLRR         GMPT HVK+GEDIAILAGDALLS+SF H A
Sbjct:  115 KICDAMRYSLLAGGKRVRPALCIAACEMLGGTEEMCMPSAVALEMIHTMSLIHDDLPAMDNDDLRR---------GMPTSHVKYGEDIAILAGDALLSESFAHVA 210
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BLAST of mRNA_H-elongata_contig13402.2415.1 vs. uniprot
Match: B8BXV9_THAPS (Geranylgeranyl pyrophosphate synthetase n=1 Tax=Thalassiosira pseudonana TaxID=35128 RepID=B8BXV9_THAPS)

HSP 1 Score: 154 bits (390), Expect = 5.030e-44
Identity = 78/105 (74.29%), Postives = 87/105 (82.86%), Query Frame = 1 
Query:    1 KICEAMRYSLMAGGKRVRPVLTIAACEMFGGSMEMAMPTAVSTEMIHTMSLIHDDLPAMDDDDLRRRGLLNSWNMGMPTCHVKFGEDIAILAGDALLSKSFEHCA 315
            KICE+M YSLMAGGKR+RPVL IAACEMFGGS ++AMPTAV+ EMIHTMSLIHDDLP+MD+DDLRR         G PT HV FGED+AILAGD+LLS SFEH A
Sbjct:   75 KICESMAYSLMAGGKRIRPVLCIAACEMFGGSQDVAMPTAVALEMIHTMSLIHDDLPSMDNDDLRR---------GKPTNHVVFGEDVAILAGDSLLSTSFEHVA 170
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BLAST of mRNA_H-elongata_contig13402.2415.1 vs. uniprot
Match: A0A7S2A4A8_TRICV (Hypothetical protein (Fragment) n=1 Tax=Trieres chinensis TaxID=1514140 RepID=A0A7S2A4A8_TRICV)

HSP 1 Score: 152 bits (383), Expect = 6.100e-44
Identity = 77/105 (73.33%), Postives = 86/105 (81.90%), Query Frame = 1 
Query:    1 KICEAMRYSLMAGGKRVRPVLTIAACEMFGGSMEMAMPTAVSTEMIHTMSLIHDDLPAMDDDDLRRRGLLNSWNMGMPTCHVKFGEDIAILAGDALLSKSFEHCA 315
            KICE+M YSLMAGGKR+RPVL +AACEMFGG+ E AMPTAV+ EMIHTMSLIHDDLP+MD+DDLRR         G PT HV +GED+AILAGDALLS SFEH A
Sbjct:   79 KICESMSYSLMAGGKRIRPVLCLAACEMFGGTEERAMPTAVALEMIHTMSLIHDDLPSMDNDDLRR---------GKPTNHVIYGEDVAILAGDALLSTSFEHVA 174
[Close]
BLAST of mRNA_H-elongata_contig13402.2415.1 vs. uniprot
Match: A0A7S2RH45_9STRA (Hypothetical protein n=1 Tax=Rhizochromulina marina TaxID=1034831 RepID=A0A7S2RH45_9STRA)

HSP 1 Score: 154 bits (389), Expect = 7.430e-44
Identity = 77/105 (73.33%), Postives = 87/105 (82.86%), Query Frame = 1 
Query:    1 KICEAMRYSLMAGGKRVRPVLTIAACEMFGGSMEMAMPTAVSTEMIHTMSLIHDDLPAMDDDDLRRRGLLNSWNMGMPTCHVKFGEDIAILAGDALLSKSFEHCA 315
            KI E+MRYSL+AGGKRVRP++ IAACEM GG+ EMAMPTAV+ EMIHTMSL+HDDLP+MD+DDLRR         G PT HV FGEDIAILAGDALLS +FEHCA
Sbjct:   77 KITESMRYSLLAGGKRVRPIMCIAACEMLGGTQEMAMPTAVAIEMIHTMSLVHDDLPSMDNDDLRR---------GKPTNHVLFGEDIAILAGDALLSTAFEHCA 172
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BLAST of mRNA_H-elongata_contig13402.2415.1 vs. uniprot
Match: F0Y0W2_AURAN (Uncharacterized protein n=1 Tax=Aureococcus anophagefferens TaxID=44056 RepID=F0Y0W2_AURAN)

HSP 1 Score: 154 bits (388), Expect = 1.350e-43
Identity = 78/104 (75.00%), Postives = 87/104 (83.65%), Query Frame = 1 
Query:    4 ICEAMRYSLMAGGKRVRPVLTIAACEMFGGSMEMAMPTAVSTEMIHTMSLIHDDLPAMDDDDLRRRGLLNSWNMGMPTCHVKFGEDIAILAGDALLSKSFEHCA 315
            I E+MRYSL+AGGKRVRPV+ IAACEMFGG+  MAMPTAV+ EMIHTMSLIHDDLPAMD+DDLRR         GMPT HV +G+D+AILAGDALLS SFEHCA
Sbjct:   87 IVESMRYSLLAGGKRVRPVMCIAACEMFGGTEAMAMPTAVAIEMIHTMSLIHDDLPAMDNDDLRR---------GMPTNHVIYGDDVAILAGDALLSTSFEHCA 181
[Close]
BLAST of mRNA_H-elongata_contig13402.2415.1 vs. uniprot
Match: A0A7S3Q3N6_9STRA (Hypothetical protein n=1 Tax=Chaetoceros debilis TaxID=122233 RepID=A0A7S3Q3N6_9STRA)

HSP 1 Score: 152 bits (385), Expect = 3.010e-43
Identity = 77/105 (73.33%), Postives = 86/105 (81.90%), Query Frame = 1 
Query:    1 KICEAMRYSLMAGGKRVRPVLTIAACEMFGGSMEMAMPTAVSTEMIHTMSLIHDDLPAMDDDDLRRRGLLNSWNMGMPTCHVKFGEDIAILAGDALLSKSFEHCA 315
            KICE+M YSLMAGGKR+RPVL IAACEMFGGS E AMPTAV+ EMIHTMSLIHDDLP+MD+DDLRR         G PT H+ +GED+AILAGDALLS SF+H A
Sbjct:   78 KICESMDYSLMAGGKRIRPVLCIAACEMFGGSQEAAMPTAVALEMIHTMSLIHDDLPSMDNDDLRR---------GKPTNHIIYGEDVAILAGDALLSTSFQHVA 173
[Close]
BLAST of mRNA_H-elongata_contig13402.2415.1 vs. uniprot
Match: A0A835ZD72_9STRA (Farnesyltransferase n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835ZD72_9STRA)

HSP 1 Score: 151 bits (381), Expect = 4.270e-43
Identity = 78/105 (74.29%), Postives = 87/105 (82.86%), Query Frame = 1 
Query:    1 KICEAMRYSLMAGGKRVRPVLTIAACEMFGGSMEMAMPTAVSTEMIHTMSLIHDDLPAMDDDDLRRRGLLNSWNMGMPTCHVKFGEDIAILAGDALLSKSFEHCA 315
            KICE+M+YSLMAGGKRVRP+L IAACEMFGG+ E AMPTAV+ EMIH+MSLIHDDLPAMD+DDLRR         G PT HV +GE +AILAGDALLSKSFEH A
Sbjct:   35 KICESMKYSLMAGGKRVRPILCIAACEMFGGTDEDAMPTAVALEMIHSMSLIHDDLPAMDNDDLRR---------GKPTNHVVYGEAMAILAGDALLSKSFEHVA 130
[Close]
BLAST of mRNA_H-elongata_contig13402.2415.1 vs. uniprot
Match: A0A6U5JU78_9STRA (Hypothetical protein n=1 Tax=Corethron hystrix TaxID=216773 RepID=A0A6U5JU78_9STRA)

HSP 1 Score: 151 bits (381), Expect = 1.110e-42
Identity = 76/105 (72.38%), Postives = 85/105 (80.95%), Query Frame = 1 
Query:    1 KICEAMRYSLMAGGKRVRPVLTIAACEMFGGSMEMAMPTAVSTEMIHTMSLIHDDLPAMDDDDLRRRGLLNSWNMGMPTCHVKFGEDIAILAGDALLSKSFEHCA 315
            KICE+MRYSLMAGGKR+RP L +AAC MFGGS + AMPTAV+ EMIHTMSLIHDDLP+MDDDDLRR         G PT HV +GED+AILAGDA+LS SFEH A
Sbjct:   74 KICESMRYSLMAGGKRIRPALCLAACNMFGGSDDDAMPTAVALEMIHTMSLIHDDLPSMDDDDLRR---------GKPTNHVLYGEDVAILAGDAMLSTSFEHVA 169
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig13402.2415.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D7FWT5_ECTSI1.300e-5185.15Geranylgeranyl pyrophosphate synthase, chloroplast... [more]
A0A7S2FLB2_9STRA5.440e-4572.38Hypothetical protein n=1 Tax=Dictyocha speculum Ta... [more]
A0A7S3YD71_9EUKA4.490e-4475.24Hypothetical protein n=2 Tax=Lotharella globosa Ta... [more]
B8BXV9_THAPS5.030e-4474.29Geranylgeranyl pyrophosphate synthetase n=1 Tax=Th... [more]
A0A7S2A4A8_TRICV6.100e-4473.33Hypothetical protein (Fragment) n=1 Tax=Trieres ch... [more]
A0A7S2RH45_9STRA7.430e-4473.33Hypothetical protein n=1 Tax=Rhizochromulina marin... [more]
F0Y0W2_AURAN1.350e-4375.00Uncharacterized protein n=1 Tax=Aureococcus anopha... [more]
A0A7S3Q3N6_9STRA3.010e-4373.33Hypothetical protein n=1 Tax=Chaetoceros debilis T... [more]
A0A835ZD72_9STRA4.270e-4374.29Farnesyltransferase n=1 Tax=Tribonema minus TaxID=... [more]
A0A6U5JU78_9STRA1.110e-4272.38Hypothetical protein n=1 Tax=Corethron hystrix Tax... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig13402contigH-elongata_contig13402:7394..7960 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score172.2
Seed ortholog evalue1.2e-40
Seed eggNOG ortholog2880.D7FWT5
Preferred nameGGPS1
KEGG rclassRC00279
KEGG koko:K13789
KEGG ReactionR01658,R02003,R02061
KEGG Pathwayko00900,ko01100,ko01110,ko01130,map00900,map01100,map01110,map01130
KEGG ModuleM00364,M00366
GOsGO:0000003,GO:0003006,GO:0003674,GO:0003824,GO:0004161,GO:0004311,GO:0004659,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005739,GO:0005783,GO:0005829,GO:0006629,GO:0006720,GO:0007275,GO:0008150,GO:0008152,GO:0008299,GO:0008610,GO:0009058,GO:0009507,GO:0009513,GO:0009536,GO:0009790,GO:0009791,GO:0009793,GO:0009987,GO:0010154,GO:0012505,GO:0016740,GO:0016765,GO:0022414,GO:0032501,GO:0032502,GO:0042214,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0043692,GO:0043693,GO:0044237,GO:0044238,GO:0044249,GO:0044255,GO:0044424,GO:0044444,GO:0044464,GO:0046246,GO:0048316,GO:0048608,GO:0048731,GO:0048856,GO:0061458,GO:0071704,GO:1901576
EggNOG free text desc.isoprenoid biosynthetic process
EggNOG OGsCOG0142@1,KOG0776@2759
EC2.5.1.1,2.5.1.10,2.5.1.29
COG Functional cat.H
BiGG ReactioniRC1080.CRv4_Au5_s12_g2763_t1
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko00002,ko01000,ko01006
Hectar predicted targeting categoryother localisation
Ec32 ortholog descriptiongeranylgeranyl pyrophosphate synthase, chloroplast precursor
Ec32 orthologEc-16_004320.1
Exons2
Model size315
Cds size300
Stop0
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig13402.2415.1prot_H-elongata_contig13402.2415.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig13402 7409..7960 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929796.20385-UTR-H-elongata_contig13402:7393..74081622929796.20385-UTR-H-elongata_contig13402:7393..7408Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig13402 7394..7408 +
1691679160.8929935-UTR-H-elongata_contig13402:7393..74081691679160.8929935-UTR-H-elongata_contig13402:7393..7408Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig13402 7394..7408 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929796.2266955-CDS-H-elongata_contig13402:7408..76171622929796.2266955-CDS-H-elongata_contig13402:7408..7617Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig13402 7409..7617 +
1691679160.9094682-CDS-H-elongata_contig13402:7408..76171691679160.9094682-CDS-H-elongata_contig13402:7408..7617Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig13402 7409..7617 +
1622929796.2424393-CDS-H-elongata_contig13402:7869..79601622929796.2424393-CDS-H-elongata_contig13402:7869..7960Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig13402 7870..7960 +
1691679160.9196038-CDS-H-elongata_contig13402:7869..79601691679160.9196038-CDS-H-elongata_contig13402:7869..7960Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig13402 7870..7960 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig13402.2415.1

>prot_H-elongata_contig13402.2415.1 ID=prot_H-elongata_contig13402.2415.1|Name=mRNA_H-elongata_contig13402.2415.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=100bp
MRYSLMAGGKRVRPVLTIAACEMFGGSMEMAMPTAVSTEMIHTMSLIHDD
LPAMDDDDLRRRGLLNSWNMGMPTCHVKFGEDIAILAGDALLSKSFEHCA
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mRNA from alignment at H-elongata_contig13402:7394..7960+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig13402.2415.1 ID=mRNA_H-elongata_contig13402.2415.1|Name=mRNA_H-elongata_contig13402.2415.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=567bp|location=Sequence derived from alignment at H-elongata_contig13402:7394..7960+ (Himanthalia elongata Himel1 dioecious)
AAGATATGCGAGGCGATGAGGTACTCTCTCATGGCCGGAGGAAAGCGCGT
GCGGCCCGTGCTCACCATCGCCGCTTGCGAGATGTTCGGAGGCTCGATGG
AGATGGCCATGCCAACGGCGGTCAGCACAGAGATGATCCACACCATGTCC
CTGATCCACGACGACCTGCCTGCCATGGACGACGATGATCTTCGGAGGCG
AGGCCTCTTGAACTCCTGGAATATGTCAAATCTGTCGACGTAACACCGTG
GCACTACTGTGCAGCGGGGGCAATTGATTCGATGTTTCTCGAACCGAGTC
ACTGCGTTGATGTAGATGACTCAGAACCCGACAACCCAGCCGCAGCCCCG
TGTCTCCGTTAGTTCTTACGGTCTGTCGTTTAAAGCTGTACTCTGCATTT
TATAGCCTAATTAATCTTGGTGTCATCGATTCGATCACGGCGGGTTTTGC
TCTTGTGTGTGGTACGTATCCAACAGGGGAATGCCCACGTGCCACGTGAA
GTTTGGCGAGGACATCGCCATTCTCGCCGGCGACGCGCTCTTGTCCAAGT
CCTTCGAACATTGCGCA
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Coding sequence (CDS) from alignment at H-elongata_contig13402:7394..7960+

>mRNA_H-elongata_contig13402.2415.1 ID=mRNA_H-elongata_contig13402.2415.1|Name=mRNA_H-elongata_contig13402.2415.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=600bp|location=Sequence derived from alignment at H-elongata_contig13402:7394..7960+ (Himanthalia elongata Himel1 dioecious)
ATGAGGTACTCTCTCATGGCCGGAGGAAAGCGCGTGCGGCCCGTGCTCAC
CATCGCCGCTTGCGAGATGTTCGGAGGCTCGATGGAGATGGCCATGCCAA
CGGCGGTCAGCACAGAGATGATCCACACCATGTCCCTGATCCACGACGAC
CTGCCTGCCATGGACGACGATGATCTTCGGAGGCGAGGCCTCTTGAACTC
CTGGAATATATGAGGTACTCTCTCATGGCCGGAGGAAAGCGCGTGCGGCC
CGTGCTCACCATCGCCGCTTGCGAGATGTTCGGAGGCTCGATGGAGATGG
CCATGCCAACGGCGGTCAGCACAGAGATGATCCACACCATGTCCCTGATC
CACGACGACCTGCCTGCCATGGACGACGATGATCTTCGGAGGCGAGGCCT
CTTGAACTCCTGGAATATGGGAATGCCCACGTGCCACGTGAAGTTTGGCG
AGGACATCGCCATTCTCGCCGGCGACGCGCTCTTGTCCAAGTCCTTCGAA
CATTGCGCAGGGAATGCCCACGTGCCACGTGAAGTTTGGCGAGGACATCG
CCATTCTCGCCGGCGACGCGCTCTTGTCCAAGTCCTTCGAACATTGCGCA
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