mRNA_H-elongata_contig13395.2412.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig13395.2412.1
Unique NamemRNA_H-elongata_contig13395.2412.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig13395.2412.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig13395contigH-elongata_contig13395:3966..4541 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size576
Cds size531
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig13395.2412.1prot_H-elongata_contig13395.2412.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig13395 4006..4536 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929796.0032659-UTR-H-elongata_contig13395:3965..40051622929796.0032659-UTR-H-elongata_contig13395:3965..4005Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig13395 3966..4005 +
1691679160.7811577-UTR-H-elongata_contig13395:3965..40051691679160.7811577-UTR-H-elongata_contig13395:3965..4005Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig13395 3966..4005 +
1622929796.0327744-UTR-H-elongata_contig13395:4536..45411622929796.0327744-UTR-H-elongata_contig13395:4536..4541Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig13395 4537..4541 +
1691679160.8064353-UTR-H-elongata_contig13395:4536..45411691679160.8064353-UTR-H-elongata_contig13395:4536..4541Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig13395 4537..4541 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929796.016131-CDS-H-elongata_contig13395:4005..45361622929796.016131-CDS-H-elongata_contig13395:4005..4536Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig13395 4006..4536 +
1691679160.794809-CDS-H-elongata_contig13395:4005..45361691679160.794809-CDS-H-elongata_contig13395:4005..4536Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig13395 4006..4536 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig13395.2412.1

>prot_H-elongata_contig13395.2412.1 ID=prot_H-elongata_contig13395.2412.1|Name=mRNA_H-elongata_contig13395.2412.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=177bp
MPGVLEPEVDHIREARGRSPAQSIEEYSSGDGRMRDSKAHSSPTDPYKAR
RTASMDAYLPNRKEGLTDVGHRATKSNDYGVRGGTRLPRASIARDLISPL
TGEKDIYVEVKKDDEKILYSQRGRPHPSATPGKKPDDKSPHTSRTAHRGA
GENRSKKRPPRVEFVHGFKLPDPSDD*
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mRNA from alignment at H-elongata_contig13395:3966..4541+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig13395.2412.1 ID=mRNA_H-elongata_contig13395.2412.1|Name=mRNA_H-elongata_contig13395.2412.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=576bp|location=Sequence derived from alignment at H-elongata_contig13395:3966..4541+ (Himanthalia elongata Himel1 dioecious)
TAAAAATGAGAATTGCCCAAGAGAGAAGCCATCACGACCGATGCCCGGGG
TTTTGGAGCCAGAAGTTGACCACATCCGCGAGGCGAGGGGTAGAAGTCCT
GCCCAGAGTATTGAGGAGTATAGTTCCGGTGATGGACGCATGCGCGACTC
GAAAGCGCACTCTTCACCGACCGATCCCTACAAGGCACGTCGGACCGCCT
CGATGGACGCGTACTTGCCAAACAGAAAGGAGGGGTTGACCGACGTTGGT
CACCGTGCAACGAAGAGTAACGACTACGGTGTCCGTGGTGGGACGAGGTT
GCCCCGCGCTTCGATTGCGCGTGACCTGATTTCTCCACTCACCGGAGAAA
AGGACATTTATGTGGAGGTAAAGAAAGACGACGAGAAGATACTCTATAGT
CAGCGCGGCCGCCCTCATCCTAGTGCGACTCCTGGGAAGAAGCCAGATGA
TAAGTCTCCCCACACCTCCAGGACGGCACACAGGGGGGCTGGAGAAAACC
GCAGCAAAAAGCGTCCACCGCGCGTTGAGTTCGTGCACGGCTTCAAGCTA
CCCGATCCGTCTGATGATTAAGGAAG
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Coding sequence (CDS) from alignment at H-elongata_contig13395:3966..4541+

>mRNA_H-elongata_contig13395.2412.1 ID=mRNA_H-elongata_contig13395.2412.1|Name=mRNA_H-elongata_contig13395.2412.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=1062bp|location=Sequence derived from alignment at H-elongata_contig13395:3966..4541+ (Himanthalia elongata Himel1 dioecious)
ATGCCCGGGGTTTTGGAGCCAGAAGTTGACCACATCCGCGAGGCGAGGGG
TAGAAGTCCTGCCCAGAGTATTGAGGAGTATAGTTCCGGTGATGGACGCA
TGCGCGACTCGAAAGCGCACTCTTCACCGACCGATCCCTACAAGGCACGT
CGGACCGCCTCGATGGACGCGTACTTGCCAAACAGAAAGGAGGGGTTGAC
CGACGTTGGTCACCGTGCAACGAAGAGTAACGACTACGGTGTCCGTGGTG
GGACGAGGTTGCCCCGCGCTTCGATTGCGCGTGACCTGATTTCTCCACTC
ACCGGAGAAAAGGACATTTATGTGGAGGTAAAGAAAGACGACGAGAAGAT
ACTCTATAGTCAGCGCGGCCGCCCTCATCCTAGTGCGACTCCTGGGAAGA
AGCCAGATGATAAGTCTCCCCACACCTCCAGGACGGCACACAGGGGGGCT
GGAGAAAACCGCAGCAAAAAGCGTCCACCGCGCGTTGAGTTCGTGCACGG
CTTCAAGCTACCCGATCCGTCTGATGATTAAATGCCCGGGGTTTTGGAGC
CAGAAGTTGACCACATCCGCGAGGCGAGGGGTAGAAGTCCTGCCCAGAGT
ATTGAGGAGTATAGTTCCGGTGATGGACGCATGCGCGACTCGAAAGCGCA
CTCTTCACCGACCGATCCCTACAAGGCACGTCGGACCGCCTCGATGGACG
CGTACTTGCCAAACAGAAAGGAGGGGTTGACCGACGTTGGTCACCGTGCA
ACGAAGAGTAACGACTACGGTGTCCGTGGTGGGACGAGGTTGCCCCGCGC
TTCGATTGCGCGTGACCTGATTTCTCCACTCACCGGAGAAAAGGACATTT
ATGTGGAGGTAAAGAAAGACGACGAGAAGATACTCTATAGTCAGCGCGGC
CGCCCTCATCCTAGTGCGACTCCTGGGAAGAAGCCAGATGATAAGTCTCC
CCACACCTCCAGGACGGCACACAGGGGGGCTGGAGAAAACCGCAGCAAAA
AGCGTCCACCGCGCGTTGAGTTCGTGCACGGCTTCAAGCTACCCGATCCG
TCTGATGATTAA
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