mRNA_H-elongata_contig13393.2410.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig13393.2410.1
Unique NamemRNA_H-elongata_contig13393.2410.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig13393.2410.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig13393contigH-elongata_contig13393:6359..7235 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size877
Cds size366
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig13393.2410.1prot_H-elongata_contig13393.2410.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig13393 6542..6907 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929795.8717976-UTR-H-elongata_contig13393:6358..65411622929795.8717976-UTR-H-elongata_contig13393:6358..6541Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig13393 6359..6541 +
1691679160.738351-UTR-H-elongata_contig13393:6358..65411691679160.738351-UTR-H-elongata_contig13393:6358..6541Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig13393 6359..6541 +
1622929795.908407-UTR-H-elongata_contig13393:6907..72351622929795.908407-UTR-H-elongata_contig13393:6907..7235Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig13393 6908..7235 +
1691679160.7563329-UTR-H-elongata_contig13393:6907..72351691679160.7563329-UTR-H-elongata_contig13393:6907..7235Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig13393 6908..7235 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929795.8923953-CDS-H-elongata_contig13393:6541..69071622929795.8923953-CDS-H-elongata_contig13393:6541..6907Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig13393 6542..6907 +
1691679160.7489657-CDS-H-elongata_contig13393:6541..69071691679160.7489657-CDS-H-elongata_contig13393:6541..6907Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig13393 6542..6907 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig13393.2410.1

>prot_H-elongata_contig13393.2410.1 ID=prot_H-elongata_contig13393.2410.1|Name=mRNA_H-elongata_contig13393.2410.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=122bp
MWGEGRTTAVARRGLNSLSLHAFNGEPGGRLGGFLTPIDDNILIREDNEG
AIKMVTSLFSSRRTRYVDVKHRPRCRREWTRTVRNHYAKSVEQHADILMK
ALEVNTLAKRPSGIKVGLRMI*
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mRNA from alignment at H-elongata_contig13393:6359..7235+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig13393.2410.1 ID=mRNA_H-elongata_contig13393.2410.1|Name=mRNA_H-elongata_contig13393.2410.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=877bp|location=Sequence derived from alignment at H-elongata_contig13393:6359..7235+ (Himanthalia elongata Himel1 dioecious)
GCCAAGCGAGGAGATCACGCGTGAAACGGCGCGCATGGCAGGTGCCCCGC
GGGGCTGACTCTATCATGCTCGGCATCTGCACTAATTATTCGCGGTAAAC
CTACCGCGTCCGCGACCTCACCACCGGTGAAGTCACCATTTGTCAGGCAA
TCCTATGGCACCCCACAGCCGACACGGTGACTAATGTGGGGGGAGGGGCG
CACCACGGCCGTTGCTCGGCGCGGCCTAAACTCCCTGTCACTACACGCCT
TCAATGGGGAGCCTGGAGGCCGGCTCGGAGGCTTCTTGACACCGATCGAC
GACAACATTCTTATCAGGGAAGATAATGAAGGCGCTATCAAGATGGTGAC
CAGCCTTTTCAGCAGCAGGCGTACGAGGTACGTGGACGTGAAACATCGTC
CACGATGCCGTCGAGAGTGGACCAGAACAGTTCGAAACCATTACGCCAAG
TCGGTGGAGCAACATGCCGATATACTGATGAAAGCGTTGGAGGTCAACAC
TCTAGCTAAACGCCCGAGCGGGATCAAAGTCGGCCTTAGAATGATCTAGC
ATAAGACGTCAGGTGCGTCGATGCGGGAGTTCGAGAGGCACACTACTTCT
GTCGAGCAGGAGGGGGTTTTCGGGGAGCGATTAATTTCGGTGCCTTTCTG
GAACGGTGATACACTCGCGTAGTTACTTATTGGGAGCGGGTGAGGCGTAA
CTAGACTAGGTGAACATCGTAAGCGGCGAGAAACGGAACAACGAGTCGAG
GCTCCGGACTCAGAAACAATGTGGAGGGTACAAGTTTTTCTGGCGAACAA
AAACGAAAGTGTTGTTCTTTAAAAAATAGTTGAACTCGTTCCAAAACCCG
TCTGAACATCCACGCCTTTTTAGCACC
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Coding sequence (CDS) from alignment at H-elongata_contig13393:6359..7235+

>mRNA_H-elongata_contig13393.2410.1 ID=mRNA_H-elongata_contig13393.2410.1|Name=mRNA_H-elongata_contig13393.2410.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=732bp|location=Sequence derived from alignment at H-elongata_contig13393:6359..7235+ (Himanthalia elongata Himel1 dioecious)
ATGTGGGGGGAGGGGCGCACCACGGCCGTTGCTCGGCGCGGCCTAAACTC
CCTGTCACTACACGCCTTCAATGGGGAGCCTGGAGGCCGGCTCGGAGGCT
TCTTGACACCGATCGACGACAACATTCTTATCAGGGAAGATAATGAAGGC
GCTATCAAGATGGTGACCAGCCTTTTCAGCAGCAGGCGTACGAGGTACGT
GGACGTGAAACATCGTCCACGATGCCGTCGAGAGTGGACCAGAACAGTTC
GAAACCATTACGCCAAGTCGGTGGAGCAACATGCCGATATACTGATGAAA
GCGTTGGAGGTCAACACTCTAGCTAAACGCCCGAGCGGGATCAAAGTCGG
CCTTAGAATGATCTAGATGTGGGGGGAGGGGCGCACCACGGCCGTTGCTC
GGCGCGGCCTAAACTCCCTGTCACTACACGCCTTCAATGGGGAGCCTGGA
GGCCGGCTCGGAGGCTTCTTGACACCGATCGACGACAACATTCTTATCAG
GGAAGATAATGAAGGCGCTATCAAGATGGTGACCAGCCTTTTCAGCAGCA
GGCGTACGAGGTACGTGGACGTGAAACATCGTCCACGATGCCGTCGAGAG
TGGACCAGAACAGTTCGAAACCATTACGCCAAGTCGGTGGAGCAACATGC
CGATATACTGATGAAAGCGTTGGAGGTCAACACTCTAGCTAAACGCCCGA
GCGGGATCAAAGTCGGCCTTAGAATGATCTAG
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