mRNA_H-elongata_contig13393.2409.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig13393.2409.1
Unique NamemRNA_H-elongata_contig13393.2409.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig13393.2409.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig13393contigH-elongata_contig13393:5051..5594 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons2
Model size449
Cds size369
Stop1
Start0
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig13393.2409.1prot_H-elongata_contig13393.2409.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig13393 5129..5594 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929795.8034155-UTR-H-elongata_contig13393:5050..51281622929795.8034155-UTR-H-elongata_contig13393:5050..5128Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig13393 5051..5128 -
1691679160.709525-UTR-H-elongata_contig13393:5050..51281691679160.709525-UTR-H-elongata_contig13393:5050..5128Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig13393 5051..5128 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929795.817254-CDS-H-elongata_contig13393:5128..51691622929795.817254-CDS-H-elongata_contig13393:5128..5169Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig13393 5129..5169 -
1691679160.7228475-CDS-H-elongata_contig13393:5128..51691691679160.7228475-CDS-H-elongata_contig13393:5128..5169Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig13393 5129..5169 -
1622929795.8285193-CDS-H-elongata_contig13393:5266..55941622929795.8285193-CDS-H-elongata_contig13393:5266..5594Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig13393 5267..5594 -
1691679160.7302024-CDS-H-elongata_contig13393:5266..55941691679160.7302024-CDS-H-elongata_contig13393:5266..5594Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig13393 5267..5594 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig13393.2409.1

>prot_H-elongata_contig13393.2409.1 ID=prot_H-elongata_contig13393.2409.1|Name=mRNA_H-elongata_contig13393.2409.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=123bp
PPPRLLPPPPPFPLPPPFPSPPLLPLSPPLPPCFHISDIRSVSSHDGNLE
FAALQGRVTCARAKGASDGGVAIASVAAGENLHSAPGGRSFAFQPLVLVY
YSTLDRFPRAFVSSIMVAINCP*
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mRNA from alignment at H-elongata_contig13393:5051..5594-

Legend: polypeptideCDSUTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig13393.2409.1 ID=mRNA_H-elongata_contig13393.2409.1|Name=mRNA_H-elongata_contig13393.2409.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=544bp|location=Sequence derived from alignment at H-elongata_contig13393:5051..5594- (Himanthalia elongata Himel1 dioecious)
CCACCTCCACGATTGCTGCCCCCTCCGCCGCCATTTCCGTTGCCTCCTCC
ATTTCCGTCGCCTCCTCTATTGCCGTTGTCTCCGCCATTGCCACCATGTT
TCCATATCTCTGATATCCGTTCGGTTTCTTCTCACGACGGGAATCTGGAA
TTTGCGGCATTGCAAGGCAGAGTTACCTGTGCGCGAGCAAAAGGGGCATC
GGATGGGGGGGTTGCCATTGCGTCGGTGGCCGCGGGTGAAAACCTTCACT
CTGCTCCCGGCGGAAGATCTTTCGCATTCCAGCCACTCGTACTGGTTTAT
TACAGTACACTCGATCGATTCCCGCGTGGCCCCGTTCGTGAATTCCTCGG
AGAACTCCATGAAGTCGATCTTGATCGAAGGGGACTTCTCGATCGTAGAT
CTGGTAGCGGCGGGGGTCTGGTAAGCTTTTGTTTCCAGTATTATGGTGGC
CATAAATTGTCCTTGACGCTCGTAGGCGGCACGCTGTTGCTCCTGCATAA
TTTATTGGGCGACAAAGTATTGTTCCTTCATCTGTTTTATCACC
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Coding sequence (CDS) from alignment at H-elongata_contig13393:5051..5594-

>mRNA_H-elongata_contig13393.2409.1 ID=mRNA_H-elongata_contig13393.2409.1|Name=mRNA_H-elongata_contig13393.2409.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=738bp|location=Sequence derived from alignment at H-elongata_contig13393:5051..5594- (Himanthalia elongata Himel1 dioecious)
CCACCTCCACGATTGCTGCCCCCTCCGCCGCCATTTCCGTTGCCTCCTCC
ATTTCCGTCGCCTCCTCTATTGCCGTTGTCTCCGCCATTGCCACCATGTT
TCCATATCTCTGATATCCGTTCGGTTTCTTCTCACGACGGGAATCTGGAA
TTTGCGGCATTGCAAGGCAGAGTTACCTGTGCGCGAGCAAAAGGGGCATC
GGATGGGGGGGTTGCCATTGCGTCGGTGGCCGCGGGTGAAAACCTTCACT
CTGCTCCCGGCGGAAGATCTTTCGCATTCCAGCCACTCGTACTGGTTTAT
TACAGTACACTCGATCGATTCCCGCGTGCCACCTCCACGATTGCTGCCCC
CTCCGCCGCCATTTCCGTTGCCTCCTCCATTTCCGTCGCCTCCTCTATTG
CCGTTGTCTCCGCCATTGCCACCATGTTTCCATATCTCTGATATCCGTTC
GGTTTCTTCTCACGACGGGAATCTGGAATTTGCGGCATTGCAAGGCAGAG
TTACCTGTGCGCGAGCAAAAGGGGCATCGGATGGGGGGGTTGCCATTGCG
TCGGTGGCCGCGGGTGAAAACCTTCACTCTGCTCCCGGCGGAAGATCTTT
CGCATTCCAGCCACTCGTACTGGTTTATTACAGTACACTCGATCGATTCC
CGCGTGCTTTTGTTTCCAGTATTATGGTGGCCATAAATTGTCCTTGACTT
TTGTTTCCAGTATTATGGTGGCCATAAATTGTCCTTGA
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