mRNA_H-elongata_contig133926.2408.1 (mRNA) Himanthalia elongata Himel1 dioecious
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Overview
Homology
BLAST of mRNA_H-elongata_contig133926.2408.1 vs. uniprot
Match: A0A6H5JRS6_9PHAE (Reverse transcriptase Ty1/copia-type domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JRS6_9PHAE) HSP 1 Score: 124 bits (311), Expect = 1.230e-32 Identity = 67/155 (43.23%), Postives = 99/155 (63.87%), Query Frame = 1
Query: 1 ADPCVFRKVVDGETEVVVVVHGDNILAHAKDKATMDRFVAELGQKFKLKDMGDARYYMGCHITRDRKARELKIDQHLYVEIMVEKFDVKKGSKIPATSGMPTLSKADEPRNPEEKEEMRKFPCREAVGALMWTATMTRPDIASAVRAVARFCKNP 465
ADPCVFRK+VD +++V++ D+IL D+ + +A L +KF K++G+ +++ GC I RD +A L+I Q Y++ MVE+FDVK S+IPAT G K E EE ++P REA+G++MW +T +RPD++ AVRAVAR P
Sbjct: 57 ADPCVFRKMVDEVVVMIIVIYVDDILVAGSDE-DCEELLASLNKKFPTKNLGECQWFDGCAIERDVEAGTLRISQTAYIDSMVERFDVKSTSRIPATPGADLGPKR-------EDEEGGEWPVREAIGSMMWVSTFSRPDVSFAVRAVARHAHAP 203
BLAST of mRNA_H-elongata_contig133926.2408.1 vs. uniprot
Match: A0A6H5KTL3_9PHAE (Reverse transcriptase Ty1/copia-type domain-containing protein (Fragment) n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KTL3_9PHAE) HSP 1 Score: 125 bits (315), Expect = 4.640e-31 Identity = 68/159 (42.77%), Postives = 100/159 (62.89%), Query Frame = 1
Query: 1 ADPCVFRKVVDGETEVVVVVHGDNILAHAKDKATMDRFVAELGQKFKLKDMGDARYYMGCHITRDRKARELKIDQHLYVEIMVEKFDVKKGSKIPATSGMPTLSKADEPRNPEEKEEMRKFPCREAVGALMWTATMTRPDIASAVRAVARFCKNPGPAH 477
ADPCVFRK+VD +++V++ D+IL D+ + +A L +KF K++G+ +++ GC I RD +A L+I Q Y++ MVE+FDVK S+IPAT G K E EE ++P REA+G++MW +T +RPD++ AVRAVAR P H
Sbjct: 200 ADPCVFRKMVDEVVVMIIVIYVDDILVAGSDE-DCEELLASLNKKFPTKNLGECQWFDGCAIERDVEAGTLRISQTAYIDSMVERFDVKSTSRIPATPGADLGPKR-------EDEEGGEWPVREAIGSMMWVSTFSRPDVSFAVRAVARHAHAPAKRH 350
BLAST of mRNA_H-elongata_contig133926.2408.1 vs. uniprot
Match: A0A6H5KSG8_9PHAE (Reverse transcriptase Ty1/copia-type domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KSG8_9PHAE) HSP 1 Score: 125 bits (315), Expect = 1.740e-30 Identity = 68/159 (42.77%), Postives = 100/159 (62.89%), Query Frame = 1
Query: 1 ADPCVFRKVVDGETEVVVVVHGDNILAHAKDKATMDRFVAELGQKFKLKDMGDARYYMGCHITRDRKARELKIDQHLYVEIMVEKFDVKKGSKIPATSGMPTLSKADEPRNPEEKEEMRKFPCREAVGALMWTATMTRPDIASAVRAVARFCKNPGPAH 477
ADPCVFRK+VD +++V++ D+IL D+ + +A L +KF K++G+ +++ GC I RD +A L+I Q Y++ MVE+FDVK S+IPAT G K E EE ++P REA+G++MW +T +RPD++ AVRAVAR P H
Sbjct: 913 ADPCVFRKMVDEVVVMIIVIYVDDILVAGSDE-DCEELLASLNKKFPTKNLGECQWFDGCAIERDVEAGTLRISQTAYIDSMVERFDVKSTSRIPATPGADLGPKR-------EDEEGGEWPVREAIGSMMWVSTFSRPDVSFAVRAVARHAHAPAKRH 1063
BLAST of mRNA_H-elongata_contig133926.2408.1 vs. uniprot
Match: A0A6H5JZQ8_9PHAE (Uncharacterized protein n=2 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JZQ8_9PHAE) HSP 1 Score: 125 bits (315), Expect = 1.780e-30 Identity = 68/159 (42.77%), Postives = 100/159 (62.89%), Query Frame = 1
Query: 1 ADPCVFRKVVDGETEVVVVVHGDNILAHAKDKATMDRFVAELGQKFKLKDMGDARYYMGCHITRDRKARELKIDQHLYVEIMVEKFDVKKGSKIPATSGMPTLSKADEPRNPEEKEEMRKFPCREAVGALMWTATMTRPDIASAVRAVARFCKNPGPAH 477
ADPCVFRK+VD +++V++ D+IL D+ + +A L +KF K++G+ +++ GC I RD +A L+I Q Y++ MVE+FDVK S+IPAT G K E EE ++P REA+G++MW +T +RPD++ AVRAVAR P H
Sbjct: 1292 ADPCVFRKMVDEVVVMIIVIYVDDILVAGSDE-DCEELLASLNKKFPTKNLGECQWFDGCAIERDVEAGTLRISQTAYIDSMVERFDVKSTSRIPATPGADLGPKR-------EDEEGGEWPVREAIGSMMWVSTFSRPDVSFAVRAVARHAHAPAKRH 1442
BLAST of mRNA_H-elongata_contig133926.2408.1 vs. uniprot
Match: A0A6H5JN00_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JN00_9PHAE) HSP 1 Score: 125 bits (315), Expect = 1.780e-30 Identity = 68/159 (42.77%), Postives = 100/159 (62.89%), Query Frame = 1
Query: 1 ADPCVFRKVVDGETEVVVVVHGDNILAHAKDKATMDRFVAELGQKFKLKDMGDARYYMGCHITRDRKARELKIDQHLYVEIMVEKFDVKKGSKIPATSGMPTLSKADEPRNPEEKEEMRKFPCREAVGALMWTATMTRPDIASAVRAVARFCKNPGPAH 477
ADPCVFRK+VD +++V++ D+IL D+ + +A L +KF K++G+ +++ GC I RD +A L+I Q Y++ MVE+FDVK S+IPAT G K E EE ++P REA+G++MW +T +RPD++ AVRAVAR P H
Sbjct: 1312 ADPCVFRKMVDQVVVMIIVIYVDDILVAGSDE-DCEELLASLNKKFPTKNLGECQWFDGCAIERDVEAGTLRISQTAYIDSMVERFDVKSTSRIPATPGADLGPKR-------EDEEGGEWPVREAIGSMMWVSTFSRPDVSFAVRAVARHAHAPAKRH 1462
BLAST of mRNA_H-elongata_contig133926.2408.1 vs. uniprot
Match: A0A6H5KF60_9PHAE (Uncharacterized protein n=12 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KF60_9PHAE) HSP 1 Score: 125 bits (315), Expect = 1.790e-30 Identity = 68/159 (42.77%), Postives = 100/159 (62.89%), Query Frame = 1
Query: 1 ADPCVFRKVVDGETEVVVVVHGDNILAHAKDKATMDRFVAELGQKFKLKDMGDARYYMGCHITRDRKARELKIDQHLYVEIMVEKFDVKKGSKIPATSGMPTLSKADEPRNPEEKEEMRKFPCREAVGALMWTATMTRPDIASAVRAVARFCKNPGPAH 477
ADPCVFRK+VD +++V++ D+IL D+ + +A L +KF K++G+ +++ GC I RD +A L+I Q Y++ MVE+FDVK S+IPAT G K E EE ++P REA+G++MW +T +RPD++ AVRAVAR P H
Sbjct: 1455 ADPCVFRKMVDEVVVMIIVIYVDDILVAGSDE-DCEELLASLNKKFPTKNLGECQWFDGCAIERDVEAGTLRISQTAYIDSMVERFDVKSTSRIPATPGADLGPKR-------EDEEGGEWPVREAIGSMMWVSTFSRPDVSFAVRAVARHAHAPAKRH 1605
BLAST of mRNA_H-elongata_contig133926.2408.1 vs. uniprot
Match: A0A6H5K164_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K164_9PHAE) HSP 1 Score: 125 bits (313), Expect = 2.870e-30 Identity = 68/159 (42.77%), Postives = 99/159 (62.26%), Query Frame = 1
Query: 1 ADPCVFRKVVDGETEVVVVVHGDNILAHAKDKATMDRFVAELGQKFKLKDMGDARYYMGCHITRDRKARELKIDQHLYVEIMVEKFDVKKGSKIPATSGMPTLSKADEPRNPEEKEEMRKFPCREAVGALMWTATMTRPDIASAVRAVARFCKNPGPAH 477
ADPCVFRK+VD +++V++ D+IL D+ + +A L +KF K++G+ +++ GC I RD A L+I Q Y++ MVE+FDVK S+IPAT G K E EE ++P REA+G++MW +T +RPD++ AVRAVAR P H
Sbjct: 548 ADPCVFRKMVDEVVVMIIVIYVDDILVAGSDE-DCEELLASLNKKFPTKNLGECQWFDGCAIERDVDAGTLRISQTAYIDSMVERFDVKSTSRIPATPGADLGPKR-------EDEEGGEWPVREAIGSMMWVSTFSRPDVSFAVRAVARHAHAPAKRH 698
BLAST of mRNA_H-elongata_contig133926.2408.1 vs. uniprot
Match: A0A6H5JQN6_9PHAE (Reverse transcriptase Ty1/copia-type domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JQN6_9PHAE) HSP 1 Score: 124 bits (311), Expect = 5.740e-30 Identity = 67/159 (42.14%), Postives = 99/159 (62.26%), Query Frame = 1
Query: 1 ADPCVFRKVVDGETEVVVVVHGDNILAHAKDKATMDRFVAELGQKFKLKDMGDARYYMGCHITRDRKARELKIDQHLYVEIMVEKFDVKKGSKIPATSGMPTLSKADEPRNPEEKEEMRKFPCREAVGALMWTATMTRPDIASAVRAVARFCKNPGPAH 477
ADPCVFRK+VD +++V++ D+IL D+ + +A L +KF K++G+ +++ GC I RD A L+I Q Y++ MVE+FDVK S+IPAT G K ++ + E +P REAVG++MW +T +RPD++ AVRAVAR P H
Sbjct: 504 ADPCVFRKMVDEVVVMIIVIYVDDILVAGSDE-DCEELLASLNKKFPTKNLGECQWFDGCAIERDVDAGTLRISQTAYIDSMVERFDVKSTSRIPATPGADLGPKREDDKGGE-------WPVREAVGSMMWVSTFSRPDVSFAVRAVARHAHAPAKRH 654
BLAST of mRNA_H-elongata_contig133926.2408.1 vs. uniprot
Match: A0A6H5JQW4_9PHAE (Reverse transcriptase Ty1/copia-type domain-containing protein (Fragment) n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JQW4_9PHAE) HSP 1 Score: 122 bits (307), Expect = 2.080e-29 Identity = 66/159 (41.51%), Postives = 99/159 (62.26%), Query Frame = 1
Query: 1 ADPCVFRKVVDGETEVVVVVHGDNILAHAKDKATMDRFVAELGQKFKLKDMGDARYYMGCHITRDRKARELKIDQHLYVEIMVEKFDVKKGSKIPATSGMPTLSKADEPRNPEEKEEMRKFPCREAVGALMWTATMTRPDIASAVRAVARFCKNPGPAH 477
ADPCVFRK+VD +++V++ D+IL D+ + +A L +KF K++G+ +++ GC I RD +A L+I Q Y++ MVE+FDVK S+IPAT G K E EE ++P R+A+G++MW +T +RPD++ A RAVAR P H
Sbjct: 1022 ADPCVFRKMVDEVVVMIIVIYVDDILVAGSDE-DCEELLASLNKKFPTKNLGECQWFDGCAIERDVEAGTLRISQTAYIDSMVERFDVKSTSRIPATPGADLGPKR-------EDEEGGEWPVRKAIGSMMWVSTFSRPDVSFAARAVARHAHAPAKRH 1172
BLAST of mRNA_H-elongata_contig133926.2408.1 vs. uniprot
Match: A0A6H5JRE9_9PHAE (Reverse transcriptase Ty1/copia-type domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JRE9_9PHAE) HSP 1 Score: 121 bits (304), Expect = 5.270e-29 Identity = 66/159 (41.51%), Postives = 97/159 (61.01%), Query Frame = 1
Query: 1 ADPCVFRKVVDGETEVVVVVHGDNILAHAKDKATMDRFVAELGQKFKLKDMGDARYYMGCHITRDRKARELKIDQHLYVEIMVEKFDVKKGSKIPATSGMPTLSKADEPRNPEEKEEMRKFPCREAVGALMWTATMTRPDIASAVRAVARFCKNPGPAH 477
ADPCVFRK+VD +++V++ D+IL D+ + +A L + F K++G+ ++ GC I RD +A L+I Q Y++ MVE+FDVK S+IPAT G K E EE ++P REA+G++MW +T +RPD++ AVRAV R P H
Sbjct: 850 ADPCVFRKMVDEVVVMIIVIYVDDILVAGSDE-DCEELLASLNKMFPTKNLGECEWFDGCAIERDVEAGTLRISQTAYIDSMVERFDVKSTSRIPATPGADLGPKR-------EDEEGGEWPVREAIGSMMWVSTFSRPDVSFAVRAVVRHAHAPAKRH 1000 The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig133926.2408.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_H-elongata_contig133926.2408.1 >prot_H-elongata_contig133926.2408.1 ID=prot_H-elongata_contig133926.2408.1|Name=mRNA_H-elongata_contig133926.2408.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=159bp ADPCVFRKVVDGETEVVVVVHGDNILAHAKDKATMDRFVAELGQKFKLKDback to top mRNA from alignment at H-elongata_contig133926:1303..1779+ Legend: CDSpolypeptide Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_H-elongata_contig133926.2408.1 ID=mRNA_H-elongata_contig133926.2408.1|Name=mRNA_H-elongata_contig133926.2408.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=477bp|location=Sequence derived from alignment at H-elongata_contig133926:1303..1779+ (Himanthalia elongata Himel1 dioecious)back to top Coding sequence (CDS) from alignment at H-elongata_contig133926:1303..1779+ >mRNA_H-elongata_contig133926.2408.1 ID=mRNA_H-elongata_contig133926.2408.1|Name=mRNA_H-elongata_contig133926.2408.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=954bp|location=Sequence derived from alignment at H-elongata_contig133926:1303..1779+ (Himanthalia elongata Himel1 dioecious)back to top |