prot_H-elongata_contig133900.2407.1 (polypeptide) Himanthalia elongata Himel1 dioecious

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_H-elongata_contig133900.2407.1
Unique Nameprot_H-elongata_contig133900.2407.1
Typepolypeptide
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Sequence length86
Homology
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BLAST of mRNA_H-elongata_contig133900.2407.1 vs. uniprot
Match: A0A6A3X5U6_9STRA (CCHC-type domain-containing protein n=5 Tax=Phytophthora TaxID=4783 RepID=A0A6A3X5U6_9STRA)

HSP 1 Score: 50.8 bits (120), Expect = 2.330e-5
Identity = 26/84 (30.95%), Postives = 46/84 (54.76%), Query Frame = 0 
Query:    2 AWRNLETHYRTKGTREILRVSHKINGKIMEPGGDPLKFIMEIDRLAADLNRLGDKSVTELRKCVIIVSSLSTDYEMECRMLENN 85
            AW  L   Y        + ++ +++G  ME G    K +   D L   L +LG+ ++ E R+ VI++SSL T++E+ C ++EN+
Sbjct:   83 AWNTLRDFYNLTTMHNRVTMTRRLHGFKMEDGATMAKHLDNFDELIMGLQKLGE-TLDEARQLVILLSSLPTEHELICSIVENS 165
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig133900.2407.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
A0A6A3X5U6_9STRA2.330e-530.95CCHC-type domain-containing protein n=5 Tax=Phytop... [more]
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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availablePFAMPF14223Retrotran_gag_2coord: 1..84
e-value: 3.4E-11
score: 43.0

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig133900contigH-elongata_contig133900:47..304 +
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-09-29
Diamond blastp: OGS1.0 vs UniRef902022-09-16
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig133900.2407.1mRNA_H-elongata_contig133900.2407.1Himanthalia elongata Himel1 dioeciousmRNAH-elongata_contig133900 47..304 +


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_H-elongata_contig133900.2407.1 ID=prot_H-elongata_contig133900.2407.1|Name=mRNA_H-elongata_contig133900.2407.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=86bp
DAWRNLETHYRTKGTREILRVSHKINGKIMEPGGDPLKFIMEIDRLAADL
NRLGDKSVTELRKCVIIVSSLSTDYEMECRMLENNP
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