mRNA_H-elongata_contig133900.2407.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig133900.2407.1
Unique NamemRNA_H-elongata_contig133900.2407.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
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BLAST of mRNA_H-elongata_contig133900.2407.1 vs. uniprot
Match: A0A6A3X5U6_9STRA (CCHC-type domain-containing protein n=5 Tax=Phytophthora TaxID=4783 RepID=A0A6A3X5U6_9STRA)

HSP 1 Score: 50.8 bits (120), Expect = 2.330e-5
Identity = 26/84 (30.95%), Postives = 46/84 (54.76%), Query Frame = 1 
Query:    4 AWRNLETHYRTKGTREILRVSHKINGKIMEPGGDPLKFIMEIDRLAADLNRLGDKSVTELRKCVIIVSSLSTDYEMECRMLENN 255
            AW  L   Y        + ++ +++G  ME G    K +   D L   L +LG+ ++ E R+ VI++SSL T++E+ C ++EN+
Sbjct:   83 AWNTLRDFYNLTTMHNRVTMTRRLHGFKMEDGATMAKHLDNFDELIMGLQKLGE-TLDEARQLVILLSSLPTEHELICSIVENS 165
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig133900.2407.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
A0A6A3X5U6_9STRA2.330e-530.95CCHC-type domain-containing protein n=5 Tax=Phytop... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig133900contigH-elongata_contig133900:47..304 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size258
Cds size258
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929795.700314-CDS-H-elongata_contig133900:46..3041622929795.700314-CDS-H-elongata_contig133900:46..304Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig133900 47..304 +
1691679160.6862316-CDS-H-elongata_contig133900:46..3041691679160.6862316-CDS-H-elongata_contig133900:46..304Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig133900 47..304 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig133900.2407.1prot_H-elongata_contig133900.2407.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig133900 47..304 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig133900.2407.1

>prot_H-elongata_contig133900.2407.1 ID=prot_H-elongata_contig133900.2407.1|Name=mRNA_H-elongata_contig133900.2407.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=86bp
DAWRNLETHYRTKGTREILRVSHKINGKIMEPGGDPLKFIMEIDRLAADL
NRLGDKSVTELRKCVIIVSSLSTDYEMECRMLENNP
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mRNA from alignment at H-elongata_contig133900:47..304+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig133900.2407.1 ID=mRNA_H-elongata_contig133900.2407.1|Name=mRNA_H-elongata_contig133900.2407.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=258bp|location=Sequence derived from alignment at H-elongata_contig133900:47..304+ (Himanthalia elongata Himel1 dioecious)
GACGCGTGGCGAAATCTTGAAACACACTACAGAACGAAGGGAACTAGAGA
GATACTTCGTGTGTCCCATAAAATCAACGGGAAGATAATGGAACCAGGTG
GAGATCCATTGAAATTTATTATGGAAATTGACAGGCTAGCAGCTGATCTC
AACCGATTGGGCGACAAATCCGTAACTGAATTAAGAAAATGCGTAATCAT
CGTATCTAGTCTCTCTACTGACTACGAGATGGAGTGCCGCATGTTGGAAA
ATAACCCT
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Coding sequence (CDS) from alignment at H-elongata_contig133900:47..304+

>mRNA_H-elongata_contig133900.2407.1 ID=mRNA_H-elongata_contig133900.2407.1|Name=mRNA_H-elongata_contig133900.2407.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=516bp|location=Sequence derived from alignment at H-elongata_contig133900:47..304+ (Himanthalia elongata Himel1 dioecious)
GACGCGTGGCGAAATCTTGAAACACACTACAGAACGAAGGGAACTAGAGA
GATACTTCGTGTGTCCCATAAAATCAACGGGAAGATAATGGAACCAGGTG
GAGATCCATTGAAATTTATTATGGAAATTGACAGGCTAGCAGCTGATCTC
AACCGATTGGGCGACAAATCCGTAACTGAATTAAGAAAATGCGTAATCAT
CGTATCTAGTCTCTCTACTGACTACGAGATGGAGTGCCGCATGTTGGAAA
ATAACCCTGACGCGTGGCGAAATCTTGAAACACACTACAGAACGAAGGGA
ACTAGAGAGATACTTCGTGTGTCCCATAAAATCAACGGGAAGATAATGGA
ACCAGGTGGAGATCCATTGAAATTTATTATGGAAATTGACAGGCTAGCAG
CTGATCTCAACCGATTGGGCGACAAATCCGTAACTGAATTAAGAAAATGC
GTAATCATCGTATCTAGTCTCTCTACTGACTACGAGATGGAGTGCCGCAT
GTTGGAAAATAACCCT
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