mRNA_H-elongata_contig133841.2403.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig133841.2403.1
Unique NamemRNA_H-elongata_contig133841.2403.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
[Close]
BLAST of mRNA_H-elongata_contig133841.2403.1 vs. uniprot
Match: A0A6H5KAC2_9PHAE (Integrase catalytic domain-containing protein n=2 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KAC2_9PHAE)

HSP 1 Score: 82.4 bits (202), Expect = 1.980e-16
Identity = 43/86 (50.00%), Postives = 57/86 (66.28%), Query Frame = 1 
Query:    1 WRRAMRAELEGHDQTGTFSGQSVPAGVNVMTAKWIFSFKTDRDGFITRAKARLVARGFGPKYCVDYFETFAATPSVSSIKVAMAIA 258
            W  A R E  G +  GTF  Q    G NV++AKW++S+K D  G+  RAKARLVARGF  +  VD+FETF+  PS++SI++  AIA
Sbjct: 1384 WTNAERKEFFGLNAVGTFEEQR---GTNVISAKWVYSWKGDEFGYAVRAKARLVARGFAQREGVDFFETFSPCPSITSIRLLAAIA 1466
[Close]
BLAST of mRNA_H-elongata_contig133841.2403.1 vs. uniprot
Match: A0A6H5KBJ6_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KBJ6_9PHAE)

HSP 1 Score: 80.9 bits (198), Expect = 6.840e-16
Identity = 42/86 (48.84%), Postives = 57/86 (66.28%), Query Frame = 1 
Query:    1 WRRAMRAELEGHDQTGTFSGQSVPAGVNVMTAKWIFSFKTDRDGFITRAKARLVARGFGPKYCVDYFETFAATPSVSSIKVAMAIA 258
            W  A R E  G +  GTF  +    G NV++AKW++S+K D  G+  RAKARLVARGF  +  VD+FETF+  PS++SI++  AIA
Sbjct: 1266 WTNAERKEFFGLNAVGTFEER----GTNVISAKWVYSWKGDEFGYAVRAKARLVARGFAQREGVDFFETFSPCPSITSIRLLAAIA 1347
[Close]
BLAST of mRNA_H-elongata_contig133841.2403.1 vs. uniprot
Match: A0A6H5JVD9_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JVD9_9PHAE)

HSP 1 Score: 80.5 bits (197), Expect = 9.350e-16
Identity = 42/86 (48.84%), Postives = 56/86 (65.12%), Query Frame = 1 
Query:    1 WRRAMRAELEGHDQTGTFSGQSVPAGVNVMTAKWIFSFKTDRDGFITRAKARLVARGFGPKYCVDYFETFAATPSVSSIKVAMAIA 258
            W  A R E  G +  GTF  Q    G NV++AKW++S+K D  G+  RAKARLVARGF  +  VD+ ETF+  PS++SI++  AIA
Sbjct: 1498 WTNAERKEFFGLNAVGTFEEQR---GTNVISAKWVYSWKGDEFGYAVRAKARLVARGFAQREVVDFVETFSPCPSITSIRLLAAIA 1580
[Close]
BLAST of mRNA_H-elongata_contig133841.2403.1 vs. uniprot
Match: A0A6H5KMK9_9PHAE (Reverse transcriptase Ty1/copia-type domain-containing protein (Fragment) n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KMK9_9PHAE)

HSP 1 Score: 75.9 bits (185), Expect = 3.640e-14
Identity = 40/94 (42.55%), Postives = 57/94 (60.64%), Query Frame = 1 
Query:    1 WRRAMRAELEGHDQ--------TGTFSGQSVPAGVNVMTAKWIFSFKTDRDGFITRAKARLVARGFGPKYCVDYFETFAATPSVSSIKVAMAIA 258
            W  A R  + G  +        + +  G+    G NV++AKW+FS+K D  G+  RAKARLVARGF  +  VD+FETF+  PS++SI++  AIA
Sbjct:  112 WTNAERKXVAGEARWAGAGDICSSSHGGRDQARGTNVISAKWVFSWKRDEFGYAVRAKARLVARGFAQREGVDFFETFSPCPSITSIRLLAAIA 205
[Close]
BLAST of mRNA_H-elongata_contig133841.2403.1 vs. uniprot
Match: A0A4Q6CQJ4_9GAMM (Reverse transcriptase Ty1/copia-type domain-containing protein n=1 Tax=Moraxellaceae bacterium TaxID=1889775 RepID=A0A4Q6CQJ4_9GAMM)

HSP 1 Score: 70.9 bits (172), Expect = 6.140e-14
Identity = 34/82 (41.46%), Postives = 49/82 (59.76%), Query Frame = 1 
Query:   10 AMRAELEGHDQTGTFSGQSVPAGVNVMTAKWIFSFKTDRDGFITRAKARLVARGFGPKYCVDYFETFAATPSVSSIKVAMAI 255
            A+  EL  HD   T+     PA   ++T KW+F+ K D+ G I R KARLVARGF  +  VD+++TFA    + S++  +AI
Sbjct:   17 AIAVELAAHDSNKTWIEVERPANARILTTKWVFALKRDKQGNIERHKARLVARGFEQRPGVDFYQTFAPVAKLESVRALLAI 98
[Close]
BLAST of mRNA_H-elongata_contig133841.2403.1 vs. uniprot
Match: A0A6H5JKW3_9PHAE (Reverse transcriptase Ty1/copia-type domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JKW3_9PHAE)

HSP 1 Score: 74.3 bits (181), Expect = 1.080e-13
Identity = 41/86 (47.67%), Postives = 53/86 (61.63%), Query Frame = 1 
Query:    1 WRRAMRAELEGHDQTGTFSGQS-VPAGVNVMTAKWIFSFKTDRDGFITRAKARLVARGFGPKYCVDYFETFAATPSVSSIKVAMAI 255
            W   M  EL+GH +TGTFS  S +P G   ++AKWIFS KT+  G I   KAR+VARGF     VD+  + +A PS  SIK  +A+
Sbjct:  216 WEADMTKELDGHKKTGTFSEISGLPEGRKAISAKWIFSHKTNEKGLIVDFKARMVARGFSQIPGVDFHHSSSACPSAVSIKTMVAV 301
[Close]
BLAST of mRNA_H-elongata_contig133841.2403.1 vs. uniprot
Match: A0A8D8C7P3_CULPI (Copia protein (Fragment) n=1 Tax=Culex pipiens TaxID=7175 RepID=A0A8D8C7P3_CULPI)

HSP 1 Score: 70.9 bits (172), Expect = 1.770e-13
Identity = 34/87 (39.08%), Postives = 52/87 (59.77%), Query Frame = 1 
Query:    1 WRRAMRAELEGHDQTGTFSGQSVPAGVNVMTAKWIFSFKTDRDGFITRAKARLVARGFGPKYCVDYFETFAATPSVSSIKVAMAIAV 261
            W  A+R EL    +  T+    +P G  V+T+KW+F  K D++G + R KARLVARGF     VDY +TFA    +S+++  +A+ +
Sbjct:   53 WYAAVRDELNSLTENQTWDVVDLPRGAKVITSKWVFKKKVDKNGDLERLKARLVARGFQQTASVDYHDTFAPVAKLSTVRFLLAVGI 139
[Close]
BLAST of mRNA_H-elongata_contig133841.2403.1 vs. uniprot
Match: A0A6H5KF65_9PHAE (Reverse transcriptase Ty1/copia-type domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KF65_9PHAE)

HSP 1 Score: 73.9 bits (180), Expect = 1.810e-13
Identity = 40/86 (46.51%), Postives = 53/86 (61.63%), Query Frame = 1 
Query:    1 WRRAMRAELEGHDQTGTFSGQS-VPAGVNVMTAKWIFSFKTDRDGFITRAKARLVARGFGPKYCVDYFETFAATPSVSSIKVAMAI 255
            W  A+  E +GH +TGTFS  S +P G   ++AKWIFS KT+  G I   KAR+VARGF     VD+  + +A PS  SIK  +A+
Sbjct:  251 WEAAIAKEFDGHKKTGTFSEISGLPEGRKAISAKWIFSHKTNEKGLIVDFKARMVARGFSQVPGVDFHHSSSACPSAVSIKTMVAV 336
[Close]
BLAST of mRNA_H-elongata_contig133841.2403.1 vs. uniprot
Match: A0A6H5KR39_9PHAE (Reverse transcriptase Ty1/copia-type domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KR39_9PHAE)

HSP 1 Score: 73.6 bits (179), Expect = 2.480e-13
Identity = 40/86 (46.51%), Postives = 53/86 (61.63%), Query Frame = 1 
Query:    1 WRRAMRAELEGHDQTGTFSGQS-VPAGVNVMTAKWIFSFKTDRDGFITRAKARLVARGFGPKYCVDYFETFAATPSVSSIKVAMAI 255
            W  A+  E +GH +TGTFS  S +P G   ++AKWIFS KT+  G I   KAR+VARGF     VD+  + +A PS  SIK  +A+
Sbjct:  132 WEAAIAKEFDGHKKTGTFSEISGLPEGRKAISAKWIFSHKTNEKGLIVDFKARMVARGFSQIPGVDFHHSSSACPSAVSIKTMVAV 217
[Close]
BLAST of mRNA_H-elongata_contig133841.2403.1 vs. uniprot
Match: A0A6H5L6D6_9PHAE (Reverse transcriptase Ty1/copia-type domain-containing protein n=2 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L6D6_9PHAE)

HSP 1 Score: 73.6 bits (179), Expect = 2.500e-13
Identity = 40/86 (46.51%), Postives = 53/86 (61.63%), Query Frame = 1 
Query:    1 WRRAMRAELEGHDQTGTFSGQS-VPAGVNVMTAKWIFSFKTDRDGFITRAKARLVARGFGPKYCVDYFETFAATPSVSSIKVAMAI 255
            W  A+  E +GH +TGTFS  S +P G   ++AKWIFS KT+  G I   KAR+VARGF     VD+  + +A PS  SIK  +A+
Sbjct:  312 WEAAIAKEFDGHKKTGTFSEISGLPEGRKAISAKWIFSHKTNEKGLIVDFKARMVARGFSQIPGVDFHHSSSACPSAVSIKTMVAV 397
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig133841.2403.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6H5KAC2_9PHAE1.980e-1650.00Integrase catalytic domain-containing protein n=2 ... [more]
A0A6H5KBJ6_9PHAE6.840e-1648.84Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5JVD9_9PHAE9.350e-1648.84Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5KMK9_9PHAE3.640e-1442.55Reverse transcriptase Ty1/copia-type domain-contai... [more]
A0A4Q6CQJ4_9GAMM6.140e-1441.46Reverse transcriptase Ty1/copia-type domain-contai... [more]
A0A6H5JKW3_9PHAE1.080e-1347.67Reverse transcriptase Ty1/copia-type domain-contai... [more]
A0A8D8C7P3_CULPI1.770e-1339.08Copia protein (Fragment) n=1 Tax=Culex pipiens Tax... [more]
A0A6H5KF65_9PHAE1.810e-1346.51Reverse transcriptase Ty1/copia-type domain-contai... [more]
A0A6H5KR39_9PHAE2.480e-1346.51Reverse transcriptase Ty1/copia-type domain-contai... [more]
A0A6H5L6D6_9PHAE2.500e-1346.51Reverse transcriptase Ty1/copia-type domain-contai... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig133841contigH-elongata_contig133841:1097..1357 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Taxonomic scopeViridiplantae
Seed ortholog score70.1
Seed ortholog evalue5.5e-10
Seed eggNOG ortholog225117.XP_009372975.1
EggNOG free text desc.transposition, RNA-mediated
EggNOG OGs37W11@33090,COG2801@1,KOG0017@2759
COG Functional cat.L
Best tax levelViridiplantae
Best eggNOG OGNA|NA|NA
Hectar predicted targeting categoryother localisation
Exons1
Model size261
Cds size249
Stop0
Start1
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929795.3535557-UTR-H-elongata_contig133841:1096..11081622929795.3535557-UTR-H-elongata_contig133841:1096..1108Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig133841 1097..1108 +
1691679160.6183555-UTR-H-elongata_contig133841:1096..11081691679160.6183555-UTR-H-elongata_contig133841:1096..1108Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig133841 1097..1108 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929795.3716576-CDS-H-elongata_contig133841:1108..13571622929795.3716576-CDS-H-elongata_contig133841:1108..1357Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig133841 1109..1357 +
1691679160.6272042-CDS-H-elongata_contig133841:1108..13571691679160.6272042-CDS-H-elongata_contig133841:1108..1357Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig133841 1109..1357 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig133841.2403.1prot_H-elongata_contig133841.2403.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig133841 1109..1357 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig133841.2403.1

>prot_H-elongata_contig133841.2403.1 ID=prot_H-elongata_contig133841.2403.1|Name=mRNA_H-elongata_contig133841.2403.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=83bp
MRAELEGHDQTGTFSGQSVPAGVNVMTAKWIFSFKTDRDGFITRAKARLV
ARGFGPKYCVDYFETFAATPSVSSIKVAMAIAV
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mRNA from alignment at H-elongata_contig133841:1097..1357+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig133841.2403.1 ID=mRNA_H-elongata_contig133841.2403.1|Name=mRNA_H-elongata_contig133841.2403.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=261bp|location=Sequence derived from alignment at H-elongata_contig133841:1097..1357+ (Himanthalia elongata Himel1 dioecious)
TGGCGTAGAGCGATGCGCGCAGAGTTGGAGGGGCATGATCAGACCGGTAC
GTTTTCCGGTCAAAGTGTCCCAGCAGGTGTAAATGTCATGACGGCAAAGT
GGATTTTTTCTTTTAAGACTGACCGCGATGGTTTTATCACCAGGGCGAAA
GCGAGGTTGGTTGCGCGCGGGTTTGGGCCGAAGTACTGTGTAGACTATTT
TGAAACGTTCGCCGCGACCCCGTCCGTGTCATCCATCAAGGTGGCGATGG
CCATTGCCGTT
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Coding sequence (CDS) from alignment at H-elongata_contig133841:1097..1357+

>mRNA_H-elongata_contig133841.2403.1 ID=mRNA_H-elongata_contig133841.2403.1|Name=mRNA_H-elongata_contig133841.2403.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=498bp|location=Sequence derived from alignment at H-elongata_contig133841:1097..1357+ (Himanthalia elongata Himel1 dioecious)
ATGCGCGCAGAGTTGGAGGGGCATGATCAGACCGGTACGTTTTCCGGTCA
AAGTGTCCCAGCAGGTGTAAATGTCATGACGGCAAAGTGGATTTTTTCTT
TTAAGACTGACCGCGATGGTTTTATCACCAGGGCGAAAGCGAGGTTGGTT
GCGCGCGGGTTTGGGCCGAAGTACTGTGTAGACTATTTTGAAACGTTCGC
CGCGACCCCGTCCGTGTCATCCATCAAGGTGGCGATGGCCATTGCCGTTA
TGCGCGCAGAGTTGGAGGGGCATGATCAGACCGGTACGTTTTCCGGTCAA
AGTGTCCCAGCAGGTGTAAATGTCATGACGGCAAAGTGGATTTTTTCTTT
TAAGACTGACCGCGATGGTTTTATCACCAGGGCGAAAGCGAGGTTGGTTG
CGCGCGGGTTTGGGCCGAAGTACTGTGTAGACTATTTTGAAACGTTCGCC
GCGACCCCGTCCGTGTCATCCATCAAGGTGGCGATGGCCATTGCCGTT
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