mRNA_H-elongata_contig100206.24.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig100206.24.1
Unique NamemRNA_H-elongata_contig100206.24.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig100206.24.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig100206contigH-elongata_contig100206:1169..1363 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryno signal peptide or anchor
Exons2
Model size174
Cds size174
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929544.5855384-CDS-H-elongata_contig100206:1168..12271622929544.5855384-CDS-H-elongata_contig100206:1168..1227Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig100206 1169..1227 +
1691679062.6538885-CDS-H-elongata_contig100206:1168..12271691679062.6538885-CDS-H-elongata_contig100206:1168..1227Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig100206 1169..1227 +
1622929544.601256-CDS-H-elongata_contig100206:1248..13631622929544.601256-CDS-H-elongata_contig100206:1248..1363Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig100206 1249..1363 +
1691679062.6671212-CDS-H-elongata_contig100206:1248..13631691679062.6671212-CDS-H-elongata_contig100206:1248..1363Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig100206 1249..1363 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig100206.24.1prot_H-elongata_contig100206.24.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig100206 1169..1363 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig100206.24.1

>prot_H-elongata_contig100206.24.1 ID=prot_H-elongata_contig100206.24.1|Name=mRNA_H-elongata_contig100206.24.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=58bp
RSIRGSYSPCVYHAPRRPPVLGRLPDAPPSRSYHPGMCRRGPGPVRRRCP
SVLLVDMA
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mRNA from alignment at H-elongata_contig100206:1169..1363+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig100206.24.1 ID=mRNA_H-elongata_contig100206.24.1|Name=mRNA_H-elongata_contig100206.24.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=195bp|location=Sequence derived from alignment at H-elongata_contig100206:1169..1363+ (Himanthalia elongata Himel1 dioecious)
CGTAGCATCCGTGGGTCCTATTCCCCCTGCGTTTACCATGCACCGAGACG
TCCCCCTGTGTCGGGACCGCTCCTGTGAAGCCTGGGGCGTTTACCTGATG
CCCCCCCATCCCGGAGCTACCACCCCGGGATGTGTCGTCGGGGCCCGGGG
CCAGTGAGGCGGCGCTGTCCCTCTGTCCTACTAGTGGATATGGCC
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Coding sequence (CDS) from alignment at H-elongata_contig100206:1169..1363+

>mRNA_H-elongata_contig100206.24.1 ID=mRNA_H-elongata_contig100206.24.1|Name=mRNA_H-elongata_contig100206.24.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=348bp|location=Sequence derived from alignment at H-elongata_contig100206:1169..1363+ (Himanthalia elongata Himel1 dioecious)
CGTAGCATCCGTGGGTCCTATTCCCCCTGCGTTTACCATGCACCGAGACG
TCCCCCTGTCGTAGCATCCGTGGGTCCTATTCCCCCTGCGTTTACCATGC
ACCGAGACGTCCCCCTGTCCTGGGGCGTTTACCTGATGCCCCCCCATCCC
GGAGCTACCACCCCGGGATGTGTCGTCGGGGCCCGGGGCCAGTGAGGCGG
CGCTGTCCCTCTGTCCTACTAGTGGATATGGCCCCTGGGGCGTTTACCTG
ATGCCCCCCCATCCCGGAGCTACCACCCCGGGATGTGTCGTCGGGGCCCG
GGGCCAGTGAGGCGGCGCTGTCCCTCTGTCCTACTAGTGGATATGGCC
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