mRNA_H-elongata_contig133804.2400.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig133804.2400.1
Unique NamemRNA_H-elongata_contig133804.2400.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig133804.2400.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig133804contigH-elongata_contig133804:102..412 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Hectar predicted targeting categorymitochondrion
Exons1
Model size311
Cds size309
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929795.0320249-CDS-H-elongata_contig133804:101..4101622929795.0320249-CDS-H-elongata_contig133804:101..410Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig133804 102..410 +
1691679160.481553-CDS-H-elongata_contig133804:101..4101691679160.481553-CDS-H-elongata_contig133804:101..410Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig133804 102..410 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig133804.2400.1prot_H-elongata_contig133804.2400.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig133804 102..410 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig133804.2400.1

>prot_H-elongata_contig133804.2400.1 ID=prot_H-elongata_contig133804.2400.1|Name=mRNA_H-elongata_contig133804.2400.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=103bp
VRSAVLAVCSGRKLCSSTCLARLIALSVTFNTFLRLGSWGRARSFSHTRW
IVSKKSSIFDTQNDTINIDDTSNRFDSICNTNGLILDTGGRHGSNLQTFS
LRL
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mRNA from alignment at H-elongata_contig133804:102..412+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig133804.2400.1 ID=mRNA_H-elongata_contig133804.2400.1|Name=mRNA_H-elongata_contig133804.2400.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=311bp|location=Sequence derived from alignment at H-elongata_contig133804:102..412+ (Himanthalia elongata Himel1 dioecious)
GTGAGGTCCGCGGTCCTGGCGGTGTGCTCAGGCAGGAAGCTCTGTAGCTC
CACGTGCTTAGCCCGTTTGATTGCCTTGTCTGTCACTTTCAACACCTTCC
TTAGACTTGGGTCCTGGGGGCGAGCACGCAGTTTCTCCCACACGCGTTGG
ATCGTATCGAAAAAGTCAAGTATCTTCGATACTCAAAACGATACGATAAA
TATCGACGATACATCGAACCGTTTCGATTCGATATGCAACACTAACGGAC
TGATTCTTGACACTGGTGGGAGACATGGGTCGAACCTTCAGACGTTTTCT
TTGCGTTTACC
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Coding sequence (CDS) from alignment at H-elongata_contig133804:102..412+

>mRNA_H-elongata_contig133804.2400.1 ID=mRNA_H-elongata_contig133804.2400.1|Name=mRNA_H-elongata_contig133804.2400.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=618bp|location=Sequence derived from alignment at H-elongata_contig133804:102..412+ (Himanthalia elongata Himel1 dioecious)
GTGAGGTCCGCGGTCCTGGCGGTGTGCTCAGGCAGGAAGCTCTGTAGCTC
CACGTGCTTAGCCCGTTTGATTGCCTTGTCTGTCACTTTCAACACCTTCC
TTAGACTTGGGTCCTGGGGGCGAGCACGCAGTTTCTCCCACACGCGTTGG
ATCGTATCGAAAAAGTCAAGTATCTTCGATACTCAAAACGATACGATAAA
TATCGACGATACATCGAACCGTTTCGATTCGATATGCAACACTAACGGAC
TGATTCTTGACACTGGTGGGAGACATGGGTCGAACCTTCAGACGTTTTCT
TTGCGTTTAGTGAGGTCCGCGGTCCTGGCGGTGTGCTCAGGCAGGAAGCT
CTGTAGCTCCACGTGCTTAGCCCGTTTGATTGCCTTGTCTGTCACTTTCA
ACACCTTCCTTAGACTTGGGTCCTGGGGGCGAGCACGCAGTTTCTCCCAC
ACGCGTTGGATCGTATCGAAAAAGTCAAGTATCTTCGATACTCAAAACGA
TACGATAAATATCGACGATACATCGAACCGTTTCGATTCGATATGCAACA
CTAACGGACTGATTCTTGACACTGGTGGGAGACATGGGTCGAACCTTCAG
ACGTTTTCTTTGCGTTTA
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