mRNA_H-elongata_contig13375.2396.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig13375.2396.1
Unique NamemRNA_H-elongata_contig13375.2396.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
BLAST of mRNA_H-elongata_contig13375.2396.1 vs. uniprot
Match: A0A6H5JGV1_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JGV1_9PHAE)

HSP 1 Score: 370 bits (951), Expect = 4.170e-126
Identity = 187/285 (65.61%), Postives = 222/285 (77.89%), Query Frame = 1
Query:    1 GTFPLLSDEWCNMARTLGRIADVSDAEAKLARESHGREQKVANNK----TLWEGEELALRYVLEDGKLNMCLRNLVDLREFHRNRR-GKVDLVDERPSTQANLDAFERGIGTVLRNAWTHIEALQTTDIPLLVEYVTGVIREAAEHPERIERMRRRGDLWDRQEVVCLSYLRGLVSCLSEYDEGRVMPHVRSAGTTAWLGSMLHANHEHLGMDTATVGAQALAFVFATEDFATYRNEYISNCDKDTFASLRADFVAGLCEDQQERKTLRPLLDVISYCQRTHSGK 840
            G FPLLSDEWC MA  LGRIA++S+AEA+L ++    E+K    K    TLWEGEE+ALRYVLEDGKLN+CLRNL + R+FHRNRR G     ++ P    +LD+FE+G+GTVLRNAWTH+EALQTTDIPLLVEYVTGV R+AA++P  +E M  RGDL  RQE+VCLSYLRGLVSCLS+Y+EGRVMPH+R A T + L +MLHANH HLGM+ A VGA+ALAFV  TEDF TYR EYI++  +  FASL+ DFV  LCED QERK LRPLLD ISYC+R  S K
Sbjct:   38 GAFPLLSDEWCKMATALGRIAEISEAEARLTQDCIEGERKEGERKDCPKTLWEGEEMALRYVLEDGKLNVCLRNLSEWRKFHRNRRDGGGQAGEDGPLVLESLDSFEKGMGTVLRNAWTHVEALQTTDIPLLVEYVTGVYRDAADNPGAVEDMSLRGDLAGRQEIVCLSYLRGLVSCLSDYEEGRVMPHLRGAETVSCLAAMLHANHRHLGMEAAAVGAEALAFVCGTEDFITYREEYINDAARVAFASLKEDFVEKLCEDSQERKILRPLLDAISYCRRKSSRK 322          
BLAST of mRNA_H-elongata_contig13375.2396.1 vs. uniprot
Match: D7G0I2_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G0I2_ECTSI)

HSP 1 Score: 318 bits (816), Expect = 8.160e-106
Identity = 164/265 (61.89%), Postives = 195/265 (73.58%), Query Frame = 1
Query:    1 GTFPLLSDEWCNMARTLGRIADVSDAEAKLARESHGREQKVANNKTLWEGEELALRYVLEDGKLNMCLRNLVDLREFHRNRR-GKVDLVDERPSTQANLDAFERGIGTVLRNAWTHIEALQTTDIPLLVEYVTGVIREAAEHPERIERMRRRGDLWDRQEVVCLSYLRGLVSCLSEYDEGRVMPHVRSAGTTAWLGSMLHANHEHLGMDTATVGAQALAFVFATEDFATYRNEYISNCDKDTFASLRADFVAGLCEDQQERKTLR 792
            G FPLLSDEWC MA  LGRIA++S+A                        EE+ALRYVLEDGKLN+CLRNL + R+FHRNRR G     ++ P    +L++FE+G+GTVLRNAWTH+EALQTTDIPLLVEYVTGV R+AA++P+ +E M  RGDL  RQE+VCLSYLRGLVS LS+++EGRVMPH+R AGT + L +MLHANH HLGM+ A VGA+ALAFV  TEDF TYR EYI    + TFASL+ DFV  LCED QERK LR
Sbjct:   37 GAFPLLSDEWCKMATALGRIAEISEA------------------------EEMALRYVLEDGKLNVCLRNLSEWRKFHRNRRDGGGQAGEDGPLVLESLNSFEKGMGTVLRNAWTHVEALQTTDIPLLVEYVTGVYRDAADNPDAVEDMSLRGDLAGRQEIVCLSYLRGLVSRLSDHEEGRVMPHLRGAGTVSCLAAMLHANHRHLGMEAAAVGAEALAFVCGTEDFITYREEYIDEATRVTFASLKEDFVEKLCEDSQERKILR 277          
BLAST of mRNA_H-elongata_contig13375.2396.1 vs. uniprot
Match: A0A835YQR7_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YQR7_9STRA)

HSP 1 Score: 237 bits (604), Expect = 3.120e-73
Identity = 122/264 (46.21%), Postives = 170/264 (64.39%), Query Frame = 1
Query:   37 MARTLGRIADVSDAEAKLARESHGREQKVANNKTLWEGEELALRYVLEDGKLNMCLRNLVDLREFHRNRRGKVDLVDERPSTQANLDAFERGIGTVLRNAWTHIEALQTTDIPLLVEYVTGVIREAAEHPERIERMRRRGDLWDRQEVVCLSYLRGLVSCLSEYDEGRVMPHVRSAGTTAWLGSMLHANHEHLGMDTATVGAQALAFVFATEDFATYRNEYISNCDKDTFASLRADFVAGLCEDQQERKTLRPLLDVISYCQRT 828
            MA+TLGR+A +++ E+KL R S        + +TLWEGEE ALRYV+EDGKLN+CLRNLVD + +    R   D V+     +  +D FE+G+G +LRNAW H+EALQTTD+P LV ++T V  +AA+ PER+ ++    D+ DRQEV+C+ YL G+V  + E  E RVMP +R+AGT   L  ML + H  LG D   +G   L     TEDFATYR++++   D+  F +LR  ++  LC+D   ++  RPLLD  S+C RT
Sbjct:    1 MAQTLGRVASITEMESKLPRAS--------SRQTLWEGEEQALRYVIEDGKLNICLRNLVDFKAYEMKLRS--DDVEPEQRQKDLMDKFEKGMGCMLRNAWNHVEALQTTDMPALVNHITTVFSDAADSPERVAQLT---DITDRQEVLCMYYLHGMVGQMEEMSEERVMPMLRAAGTLVALARMLSSCHAALGRDARELGTVCLGLACGTEDFATYRDKHVPPADRGVFVALRDAYLLDLCQDPDAKRRARPLLDFTSFCVRT 251          
BLAST of mRNA_H-elongata_contig13375.2396.1 vs. uniprot
Match: A0A7S2V4C5_9STRA (Hypothetical protein n=1 Tax=Fibrocapsa japonica TaxID=94617 RepID=A0A7S2V4C5_9STRA)

HSP 1 Score: 233 bits (594), Expect = 2.830e-72
Identity = 125/277 (45.13%), Postives = 175/277 (63.18%), Query Frame = 1
Query:    1 GTFPLLSDEWCNMARTLGRIADVSDAEAKLARESHGREQKVANNKTLWEGEELALRYVLEDGKLNMCLRNLVDLREFHRNRRGKVDLVDERPSTQANLDAFERGIGTVLRNAWTHIEALQTTDIPLLVEYVTGVIREAAEHPERIERMRRRGDLWDRQEVVCLSYLRGLVSCLSEYDEGRVMPHVRSAGTTAWLGSMLHANHEHLGMDTATVGAQALAFVFATEDFATYRN-EYISNCD-KDTFASLRADFVAGLCEDQQERKTLRPLLDVISYCQR 825
            G+FP+LSD W  MA T GRIA++SD E+KL ++S         N TLWE EELALRY+LEDGKLN+CLRNLV+ + F R  R     +      +  LDAFE+G+G VLRNAW H+EA+QTTD+PLL+ Y+  V+ +A  +P R+E  ++ G+L  RQEVV + YL  L++ + E  E RVMP ++     + L S++HA+H  L         +AL+ +  TEDF+TY++ EY+   + K+  +SL  D +  L ED   R+ +RPLLD I   QR
Sbjct:   35 GSFPVLSDSWNGMADTFGRIANISDMESKLPKDSE--------NATLWECEELALRYLLEDGKLNLCLRNLVEFKNFERELRNAPATLPT--DHRDKLDAFEKGLGCVLRNAWRHVEAIQTTDLPLLINYIGDVMEDAVRNPTRLESFQKAGELEKRQEVVVIYYLASLMTQVDEVSEDRVMPLIKERRLFSLLVSVMHAHHAKLNEGDLLAALKALSLICDTEDFSTYKDTEYLEETEEKEMLSSLHTDVIEDLTEDWDTRRKIRPLLDYIREVQR 301          
BLAST of mRNA_H-elongata_contig13375.2396.1 vs. uniprot
Match: W4FWN5_9STRA (Uncharacterized protein n=1 Tax=Aphanomyces astaci TaxID=112090 RepID=W4FWN5_9STRA)

HSP 1 Score: 194 bits (494), Expect = 2.480e-57
Identity = 113/274 (41.24%), Postives = 156/274 (56.93%), Query Frame = 1
Query:    1 GTFPLLSDEWCNMARTLGRIADVSDAEAKLARESHGREQKVANNKTLWEGEELALRYVLEDGKLNMCLRNLVDLREFHRNRRGKVDLVDERPSTQANLDAFERGIGTVLRNAWTHIEALQTTDIPLLVEYVTGVIREAAEHPERIERMRRRGDLWDRQEVVCLSYLRGLVSCLSEYDEGRVMPHVRSAGTTAWLGSMLHANHEHLGMDTATVGAQALAFVFATEDFATYRNEYISNCDKDTFASLRA---DFVAGLCEDQQERKTLRPLLDVIS 813
            G +P+LS EW  MAR + R  ++S+ E  + ++         +N TLWE EELALRY+LEDGKLN+CLR LV+ +++       +   D  P  +  +  FERG+G +L+NAW H+EALQTTD+PLL+EYV GV+    E P  +E+     DL D QE++ + YL GL+  L    E RVMP V      A L S +  + +        V  + LA +  TEDF T+   Y+S+    T   LRA   D + GL ED   RK LRPLLDV++
Sbjct:   35 GDYPVLSAEWREMARNMMRFGEISEMERHMPKQ---------DNATLWECEELALRYILEDGKLNLCLRLLVEYKDYEHG----ISQRDLDPEAKELISQFERGLGVMLKNAWLHVEALQTTDLPLLLEYVAGVLTFCEEEPAYVEKK----DLVDSQEILVVYYLHGLLKQLEHISEDRVMPLVLEKQLFALLASHIQRHWKSFSDTDVIVACEVLALLCDTEDFQTHGPSYVSSAQ--TCRDLRAIQEDILDGLMEDLDMRKKLRPLLDVVN 289          
BLAST of mRNA_H-elongata_contig13375.2396.1 vs. uniprot
Match: A0A1V9ZS11_9STRA (Uncharacterized protein n=1 Tax=Achlya hypogyna TaxID=1202772 RepID=A0A1V9ZS11_9STRA)

HSP 1 Score: 193 bits (490), Expect = 9.880e-57
Identity = 114/271 (42.07%), Postives = 154/271 (56.83%), Query Frame = 1
Query:    1 GTFPLLSDEWCNMARTLGRIADVSDAEAKLARESHGREQKVANNKTLWEGEELALRYVLEDGKLNMCLRNLVDLREFHRNRRGKVDLVDERPSTQANLDAFERGIGTVLRNAWTHIEALQTTDIPLLVEYVTGVIREAAEHPERIERMRRRGDLWDRQEVVCLSYLRGLVSCLSEYDEGRVMPHVRSAGTTAWLGSMLHANHEHLGMDTATVGAQALAFVFATEDFATYRNEYISNCD-KDTFASLRADFVAGLCEDQQERKTLRPLLDVI 810
            G +P+LS+EW  MA  + R  ++S+ E KL ++          N TLWE EELALRY+LEDGKLN+CLR LVD +E+ RN  G+    D     +  L  FERG+G +L+NAW H+EALQTTD+PLLVEY+  V+    E PE  +      DL D QEV+ L YL+GL   L +  E R+MP V+       +   L  NH  L  +   V A  LA +  TEDF T+   YI+  + +     ++ + +  L  D   RK LRPLLDV+
Sbjct:   35 GDYPILSEEWKEMANNMTRFGEISEMERKLPKQE---------NATLWECEELALRYILEDGKLNLCLRLLVDYKEYERNTIGR----DFDAEAKELLLKFERGLGVMLKNAWLHVEALQTTDLPLLVEYIATVLTFCHEEPEFFKSK----DLEDSQEVIVLYYLQGLFKRLEDIGESRIMPLVQERQIFELVLWHLQHNHRSLSPEDTLVAADVLAQICDTEDFQTHPEAYITTAEARQDLLVVQDEVLDELVGDLDIRKRLRPLLDVV 288          
BLAST of mRNA_H-elongata_contig13375.2396.1 vs. uniprot
Match: A0A485L431_9STRA (Aste57867_15868 protein n=1 Tax=Aphanomyces stellatus TaxID=120398 RepID=A0A485L431_9STRA)

HSP 1 Score: 191 bits (485), Expect = 5.710e-56
Identity = 110/272 (40.44%), Postives = 151/272 (55.51%), Query Frame = 1
Query:    1 GTFPLLSDEWCNMARTLGRIADVSDAEAKLARESHGREQKVANNKTLWEGEELALRYVLEDGKLNMCLRNLVDLREF-HRNRRGKVDLVDERPSTQANLDAFERGIGTVLRNAWTHIEALQTTDIPLLVEYVTGVIREAAEHPERIERMRRRGDLWDRQEVVCLSYLRGLVSCLSEYDEGRVMPHVRSAGTTAWLGSMLHANHEHLGMDTATVGAQALAFVFATEDFATYRNEYI-SNCDKDTFASLRADFVAGLCEDQQERKTLRPLLDVI 810
            G +P+LS+EW  MA  + R  ++S+ E  L ++          N TLWE EELALRY+LEDGKLN+CLR LV+ + + H     ++D       T+  +  FERG+G +L+NAW H+EALQTTD+PLL+EYV  V+    E P  +E      DL D QEV+ + YL GL   L    E RVMP V+     A L + L  N +        VGA+ LA +  TEDF T+   Y  S+  +    +++ D +  L  D   RK LRPLLD +
Sbjct:   35 GDYPVLSNEWKEMAHNMRRFGEISEMERNLPKQE---------NATLWECEELALRYILEDGKLNLCLRILVEYKSYEHGTAHREMDA-----ETKEIVAMFERGLGVMLKNAWLHVEALQTTDLPLLIEYVASVLTFCEEEPAYVETK----DLEDSQEVIVMYYLHGLFKQLEHISESRVMPLVQEKNIFALLAAHLQRNWKSFSPSDVRVGAEVLALICDTEDFQTHSESYFPSDQTRRDLGAIQEDILEDLVADLDTRKKLRPLLDTV 288          
BLAST of mRNA_H-elongata_contig13375.2396.1 vs. uniprot
Match: A0A067CKH1_SAPPC (Uncharacterized protein n=2 Tax=Saprolegnia TaxID=4769 RepID=A0A067CKH1_SAPPC)

HSP 1 Score: 189 bits (481), Expect = 2.210e-55
Identity = 110/271 (40.59%), Postives = 154/271 (56.83%), Query Frame = 1
Query:    1 GTFPLLSDEWCNMARTLGRIADVSDAEAKLARESHGREQKVANNKTLWEGEELALRYVLEDGKLNMCLRNLVDLREFHRNRRGKVDLVDERPSTQANLDAFERGIGTVLRNAWTHIEALQTTDIPLLVEYVTGVIREAAEHPERIERMRRRGDLWDRQEVVCLSYLRGLVSCLSEYDEGRVMPHVRSAGTTAWLGSMLHANHEHLGMDTATVGAQALAFVFATEDFATYRNEYISNCD-KDTFASLRADFVAGLCEDQQERKTLRPLLDVI 810
            G +P+LS EW  MAR + R  ++S+ E +L ++          N TLWE EELALRY+LEDGKLN+CLR LV+ +E+ RN  G+    D     +  L  FERG+G +L+NAW H+EALQTTD+PLLVEY+  V+    E PE  +      DL D QEV+ L YL GL+  L +  E R+MP ++       +   L  NH     D   V A+ LA +  +EDF T+   Y++  + +     ++ + +  L  D   RK LRPLLDV+
Sbjct:   35 GDYPILSTEWKEMARNMTRFGEISEMERQLPKQE---------NATLWECEELALRYILEDGKLNLCLRLLVEYKEYERNTLGR----DFDAEAKDLLLKFERGLGVMLKNAWLHVEALQTTDLPLLVEYIASVLTFCHEEPEFYKTK----DLEDCQEVIVLYYLHGLMKRLDDIGESRIMPLLQERQVFELVLWHLQHNHTSFSPDDVLVTAEVLAQICDSEDFQTHPTAYVATAEARQDLRVIQEEVLDDLATDLDIRKRLRPLLDVV 288          
BLAST of mRNA_H-elongata_contig13375.2396.1 vs. uniprot
Match: A0A024TTX0_9STRA (Uncharacterized protein n=2 Tax=Aphanomyces invadans TaxID=157072 RepID=A0A024TTX0_9STRA)

HSP 1 Score: 186 bits (472), Expect = 4.930e-54
Identity = 110/273 (40.29%), Postives = 156/273 (57.14%), Query Frame = 1
Query:    1 GTFPLLSDEWCNMARTLGRIADVSDAEAKLARESHGREQKVANNKTLWEGEELALRYVLEDGKLNMCLRNLVDLREF-HRNRRGKVDLVDERPSTQANLDAFERGIGTVLRNAWTHIEALQTTDIPLLVEYVTGVIREAAEHPERIERMRRRGDLWDRQEVVCLSYLRGLVSCLSEYDEGRVMPHVRSAGTTAWLGSMLHANHEHLGMDTATVGAQALAFVFATEDFATYRNEYISNCD--KDTFASLRADFVAGLCEDQQERKTLRPLLDVI 810
            G +P+LS EW  MA  + R  ++S+ E +L +           N TLWE EELALRY+LEDGKLN+CLR LV+ +++ H   + ++D     P T+A +  FERG+G +L+NAW H+EALQTTD+PLL+EY+ GV+    E P  +E+     DL D QE + + YL GL+  L    E RVMP V      A L S +  + +        V  + LA +  TEDF ++   Y+++    +D    ++ D +  L ED   RK LRPLLDVI
Sbjct:   35 GDYPVLSTEWKEMAHNMKRFGEISEMERQLPKHE---------NATLWECEELALRYILEDGKLNLCLRLLVEYKDYEHGISQRELD-----PDTKALVSQFERGLGVMLKNAWLHVEALQTTDLPLLLEYIAGVLTFCEEEPVFVEKK----DLVDSQETIVVYYLHGLLKQLEHISEDRVMPLVLEKQLFALLTSHIQRHWKLFSDVDVLVACEVLALICDTEDFQSHAQSYVASAQVVRD-LRIIQEDILDSLVEDLDVRKKLRPLLDVI 288          
BLAST of mRNA_H-elongata_contig13375.2396.1 vs. uniprot
Match: A0A8K1CIH2_PYTOL (Uncharacterized protein n=1 Tax=Pythium oligandrum TaxID=41045 RepID=A0A8K1CIH2_PYTOL)

HSP 1 Score: 193 bits (491), Expect = 3.070e-53
Identity = 109/279 (39.07%), Postives = 164/279 (58.78%), Query Frame = 1
Query:    7 FPLLSDEWCNMARTLGRIADVSDAEAKLARESHGREQKVANNKTLWEGEELALRYVLEDGKLNMCLRNLVDLREFHRN--RRGKVDLVDERPSTQANLDAFERGIGTVLRNAWTHIEALQTTDIPLLVEYVTGVIREAAEHPERIERMRRRGDLWDRQEVVCLSYLRGLVSCLSEYDEGRVMPHVRSAGTTAWLGSMLHANHEHLGMDTATVGAQALAFVFATEDFATYRNEYISNCDKDT-FASLRADFVAGLCEDQQERKTLRPLLDVISYCQRTHS 834
            +P+LSD+W  MA  +GRI ++++ E +L +         A + TLWE EE+ALRY+LEDGKLN+CLRNLV+  ++ +    RG V     + ST   L+ FE+G+G  L+NAW H EA+QTTD+PLL++Y+  V+    E+P  +   +    + + QEV  + +L G+   L   DE R+MP V+     + L + L  N   L M   + G + LA + +TEDF T+ + YI   + ++   SL+ DF+  + ED   RK LRPLLDVI   QR+ +
Sbjct:   39 YPVLSDDWIQMAEQIGRIGEITEMERQLPK---------AKDATLWECEEVALRYLLEDGKLNLCLRNLVEFNDYFKRLVERGPV-----KDSTMELLEKFEKGMGLTLKNAWLHAEAVQTTDLPLLIQYIHDVLNYCLEYPTYLSNKK----MDNCQEVTVIYFLLGISKQLESMDESRIMPLVQEKRIFSLLAAHLSVNMNRLRMADISAGVETLALLSSTEDFQTHSDLYIDALETESALRSLKDDFLDAVTEDIDVRKRLRPLLDVIRKLQRSRN 299          
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig13375.2396.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6H5JGV1_9PHAE4.170e-12665.61Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D7G0I2_ECTSI8.160e-10661.89Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A835YQR7_9STRA3.120e-7346.21Uncharacterized protein n=1 Tax=Tribonema minus Ta... [more]
A0A7S2V4C5_9STRA2.830e-7245.13Hypothetical protein n=1 Tax=Fibrocapsa japonica T... [more]
W4FWN5_9STRA2.480e-5741.24Uncharacterized protein n=1 Tax=Aphanomyces astaci... [more]
A0A1V9ZS11_9STRA9.880e-5742.07Uncharacterized protein n=1 Tax=Achlya hypogyna Ta... [more]
A0A485L431_9STRA5.710e-5640.44Aste57867_15868 protein n=1 Tax=Aphanomyces stella... [more]
A0A067CKH1_SAPPC2.210e-5540.59Uncharacterized protein n=2 Tax=Saprolegnia TaxID=... [more]
A0A024TTX0_9STRA4.930e-5440.29Uncharacterized protein n=2 Tax=Aphanomyces invada... [more]
A0A8K1CIH2_PYTOL3.070e-5339.07Uncharacterized protein n=1 Tax=Pythium oligandrum... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig13375contigH-elongata_contig13375:4363..7738 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score323.2
Seed ortholog evalue1.2e-85
Seed eggNOG ortholog2880.D7G0I2
EggNOG OGs2BYFE@1,2S2HC@2759
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Hectar predicted targeting categoryother localisation
Ec32 ortholog descriptionconserved unknown protein
Ec32 orthologEc-20_002420.1
Exons8
Model size843
Cds size843
Stop1
Start0
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig13375.2396.1prot_H-elongata_contig13375.2396.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig13375 4363..7738 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929794.5177212-CDS-H-elongata_contig13375:4362..44141622929794.5177212-CDS-H-elongata_contig13375:4362..4414Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig13375 4363..4414 -
1691679160.2307239-CDS-H-elongata_contig13375:4362..44141691679160.2307239-CDS-H-elongata_contig13375:4362..4414Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig13375 4363..4414 -
1622929794.5313156-CDS-H-elongata_contig13375:4906..50071622929794.5313156-CDS-H-elongata_contig13375:4906..5007Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig13375 4907..5007 -
1691679160.2428865-CDS-H-elongata_contig13375:4906..50071691679160.2428865-CDS-H-elongata_contig13375:4906..5007Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig13375 4907..5007 -
1622929794.541793-CDS-H-elongata_contig13375:5375..55881622929794.541793-CDS-H-elongata_contig13375:5375..5588Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig13375 5376..5588 -
1691679160.2516139-CDS-H-elongata_contig13375:5375..55881691679160.2516139-CDS-H-elongata_contig13375:5375..5588Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig13375 5376..5588 -
1622929794.552739-CDS-H-elongata_contig13375:5888..59661622929794.552739-CDS-H-elongata_contig13375:5888..5966Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig13375 5889..5966 -
1691679160.267972-CDS-H-elongata_contig13375:5888..59661691679160.267972-CDS-H-elongata_contig13375:5888..5966Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig13375 5889..5966 -
1622929794.5630322-CDS-H-elongata_contig13375:6212..63321622929794.5630322-CDS-H-elongata_contig13375:6212..6332Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig13375 6213..6332 -
1691679160.2761307-CDS-H-elongata_contig13375:6212..63321691679160.2761307-CDS-H-elongata_contig13375:6212..6332Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig13375 6213..6332 -
1622929794.575167-CDS-H-elongata_contig13375:6703..68291622929794.575167-CDS-H-elongata_contig13375:6703..6829Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig13375 6704..6829 -
1691679160.2838104-CDS-H-elongata_contig13375:6703..68291691679160.2838104-CDS-H-elongata_contig13375:6703..6829Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig13375 6704..6829 -
1622929794.5881913-CDS-H-elongata_contig13375:7115..71871622929794.5881913-CDS-H-elongata_contig13375:7115..7187Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig13375 7116..7187 -
1691679160.291592-CDS-H-elongata_contig13375:7115..71871691679160.291592-CDS-H-elongata_contig13375:7115..7187Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig13375 7116..7187 -
1622929794.6014493-CDS-H-elongata_contig13375:7657..77381622929794.6014493-CDS-H-elongata_contig13375:7657..7738Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig13375 7658..7738 -
1691679160.304031-CDS-H-elongata_contig13375:7657..77381691679160.304031-CDS-H-elongata_contig13375:7657..7738Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig13375 7658..7738 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig13375.2396.1

>prot_H-elongata_contig13375.2396.1 ID=prot_H-elongata_contig13375.2396.1|Name=mRNA_H-elongata_contig13375.2396.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=281bp
GTFPLLSDEWCNMARTLGRIADVSDAEAKLARESHGREQKVANNKTLWEG
EELALRYVLEDGKLNMCLRNLVDLREFHRNRRGKVDLVDERPSTQANLDA
FERGIGTVLRNAWTHIEALQTTDIPLLVEYVTGVIREAAEHPERIERMRR
RGDLWDRQEVVCLSYLRGLVSCLSEYDEGRVMPHVRSAGTTAWLGSMLHA
NHEHLGMDTATVGAQALAFVFATEDFATYRNEYISNCDKDTFASLRADFV
AGLCEDQQERKTLRPLLDVISYCQRTHSGK*
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mRNA from alignment at H-elongata_contig13375:4363..7738-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig13375.2396.1 ID=mRNA_H-elongata_contig13375.2396.1|Name=mRNA_H-elongata_contig13375.2396.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=3376bp|location=Sequence derived from alignment at H-elongata_contig13375:4363..7738- (Himanthalia elongata Himel1 dioecious)
GGCACTTTTCCTCTTCTCTCTGATGAATGGTGCAACATGGCAAGGACTCT CGGACGCATCGCAGACGTTTCTGACGCCGAGGTTAGATGTCCATGCAATC GAAGTGTGTAGGGCGCGCGCGTCTTCGTCATACAAATCGTAGTGTGTAGA GGCTAATATCGAACTATTCATAGACGAGTTTCGCACCAAAGTTATTTTTT CAAGCCTCGGGCTCTTGTTCCCACACCAATCGACAAGGCAGAGGGGGCTT ATACGTATACGTCGTAAATCGATGCTCGTCAAGTCCTGTGCGTGTGTTTT CCCCCGTGCAAGACGAGTGGCGTAATTGGTATGTAGGAACCCCATCCCAA TGCAACAAACCTTGGGCGCGTGCCGTTGTTTACAACCCGTTCCTCACACG GGACGGAGACGCCTCAACTACTGCGCTGCACGGGGCGCGAGAAAAGTCAA CGTACGGTCGAACTGATCGCGGGAAACTCGGTTAAGTAGTATTGAAGGCA TATTGGTATATGCTCTCTTCGTTGGGTGTGTTTACGCTTGGTAAACGGCA GGCAAAACTAGCGCGGGAAAGTCACGGAAGGGAACAAAAAGTGGCCAACA ACAAGACGCTGTGGGAAGGGGAGGTGAGTAAAGCACATGTGCCGAGATGC GATCTTCGCCGCCGCACCCCCTGGTTTCTTCCCTTATGTCTGCACTCGCA CGTCGCTTTTGTGTGGATTTGTTTGCCTGTGATTTCATCATGAATACATG TTGATGTACTCAAGGAGAAAGTTGAAGACCTCCCGGCCAGGAGACGACCA GACGCAGAATATTATATCGTCGTCCTCGTGCAGTCGAAGGAGATAGTAGG GCGGACTTGATGACCGGCTCAACGATAAAAGACGGGTGATATCCGGCGTT TTTTCACAGGAACTGGCCTTGCGCTACGTTTTGGAAGACGGGAAGCTGAA TATGTGCCTGAGAAACCTCGTCGACTTAAGAGAGTTTCATCGCAATAGGC GGGGCAAAGTGGACCTGGTGGATGAGCGACCTTCGGTCAGTGTCCGAGGC AAAAACATCCTCGGTGTTGGAATGTCCCCTGGACTGCACCTCTTACGGTG CCAAGAAGGCGTGGATGCTCGGAGAGTTGGAATGAGCCCAAAGTCTTTTA CAAATAATAAATCCCGCAAAAAACGCTGCAGAGGTACCGCCACAATTCAG CCTTTGAAACACTGGTCAACTGCGTTCCACTGACAGATCAGGGAATGCGA ATCTCGAAAACTCGACAGCGTTTTACCACTTGAGCAGCGACCTCTTCCTT TATAGGCAGGTCTGTACGAATAACCATCTACATCCTACCTCGGAAAATAC TGGCCTCGCGAGACAGCCCGCCTTCATCGTCCGCCGATCTCATGCGGTTC ATCCAGACACAAGCCAACTTGGATGCCTTCGAGAGGGGCATAGGCACCGT CTTACGGAACGCCTGGACACACATCGAGGCCTTGCAAACTACTGACATAC CTCTTCTCGTCGAGTATGTCACGGGGGTCAGTGGAATTTTTGTTTTCTCC CAGGGGTGTGTGCTTGCTTCCGCCTCGTCCGACGGCAGCATGTGTCAATC AGCCGCTGGATAACTTTGTCCATCAAGGACGCGAGCCTCAAGCGACCGAA TCGTATATACCGGGTGTGGGCGTGACACGCAGAGCAAGCGAAGCCTATAT TTTAGCACGAGGCGATATCCCGTGTGGATAAACCTGCTCAGCCCTGTGTG GACGAACTACGTTCTGTGACAGGTGATTCGGGAGGCTGCCGAGCATCCAG AGAGAATAGAGCGCATGCGACGGAGGGGGGATTTGTGGGATCGTCAGGAG GTGGGGAATGTGGTATTGCCACGGAGCAGCAAAACTAATAAGGAATTATT AATACCGGCCCGAAACGGCGTTTTTGGAGGCGTTACAATCGGTGACAATC CTCTGTCTACTCTATATAGCGTACGAATAATTTTTTATCGACCGTTGACC GTTGACCCGGCTAACCCCACCATCTACACTACTACGAAGATCAGCGAGTG CATCCCTCTCGCGATATATTCTTCAGTAAACAGCGTTCGTTACCTACGTT ACCCTCGCCCGCCGAGCCCTCAGCTGATTATTTCATAGCCTTATCGACAG GTGGTCTGCCTCAGCTACCTACGAGGACTGGTTTCATGTCTGAGCGAATA CGATGAAGGTCGTGTCATGCCGCACGTGAGATCGGCAGGCACAACCGCCT GGCTTGGGTCGATGCTGCACGCTAACCACGAACACCTCGGGATGGATACC GCTACCGTAGGAGCACAGGCGCTGGCTTTCGTGTTCGCCACAGAGGATTT TGCCACATACCGAGTGAGGAGAAAACCAAAATATATGGAAGAGAAAGGGT GGTTCAGTTCAGCGGAAGGAAGGGAAATCTAGCCCTCCGCGACCCACTCT CTCACTACCGCTCCCTTCTCCAGTCGTAAGAAAATAGCATTTGGGGTCGG TGTGGATGAAGGCCTAATATATACAACGCGCACATTACTTTGATTTCTCA AGGGGCATTTCAGCAATGTCTGGCCGCCCGGATCGTGGGCTCCCTTTTAA AAAGAAACGCTTAAGAACTAATGTGGGCCCATCTTAGAACCGGTAATCCT GAGAGAGGGTGCGGTGTACCACGAGACAGAAAAACCTCTTCACTTTGTCA TTTCCTTTGTCTTCCTGATGTGACCAAGCAGAACGAGTATATATCCAACT GCGACAAGGATACCTTCGCGTCCCTCAGAGCTGATTTTGTCGCCGGCCTG TGCGAAGATCAACAGGAAAGGAAAACCCTTAGGTGATACGCGTTTCTCCT CTCCGACAAATATTATTTTACATGCGAACAAGCACCTCCATGGTGCAGCA GGCGCACCAACTGTGTAACGTATAGCTCTAGGGTGCCGAAACACATCCAC CAATCGAAATCTCCTTCACGCGAGTAATTTCGCTACGTAAACCGAGCGGC GTATTGTGGACTCACGCCCTAGGGAAACCCGCTGAAAATATTTTGTCTTC CCTTGACCTGCCGCTTGCGTTCTACCTCGTCTGTCGCTGAACACCCAATC CACTACGCCTCTCTATCCCCATCCCTAGAAAACACCAGGGGCGATTGTCC CGCACTGAAGCTTTTCCAATAAACTAATGAGTCACAAAATTCCGGCCGCG GCATGCAACAATTATACTGAAAGTGCATGGAATATTCATGGGACAATTGC AGAACGCACTCTTTCCTCCGCCTTTTTATCATGCCGCTCTCATCCCCCCC CTCCCCAACCCGGTTGTTTATCAGACCTCTCCTCGATGTCATCTCCTACT GCCAACGTACCCACTCCGGGAAATAG
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Coding sequence (CDS) from alignment at H-elongata_contig13375:4363..7738-

>mRNA_H-elongata_contig13375.2396.1 ID=mRNA_H-elongata_contig13375.2396.1|Name=mRNA_H-elongata_contig13375.2396.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=1686bp|location=Sequence derived from alignment at H-elongata_contig13375:4363..7738- (Himanthalia elongata Himel1 dioecious)
GGCACTTTTCCTCTTCTCTCTGATGAATGGTGCAACATGGCAAGGACTCT
CGGACGCATCGCAGACGTTTCTGACGCCGAGGGCACTTTTCCTCTTCTCT
CTGATGAATGGTGCAACATGGCAAGGACTCTCGGACGCATCGCAGACGTT
TCTGACGCCGAGGCAAAACTAGCGCGGGAAAGTCACGGAAGGGAACAAAA
AGTGGCCAACAACAAGACGCTGTGGGAAGGGGAGGCAAAACTAGCGCGGG
AAAGTCACGGAAGGGAACAAAAAGTGGCCAACAACAAGACGCTGTGGGAA
GGGGAGGAACTGGCCTTGCGCTACGTTTTGGAAGACGGGAAGCTGAATAT
GTGCCTGAGAAACCTCGTCGACTTAAGAGAGTTTCATCGCAATAGGCGGG
GCAAAGTGGACCTGGTGGATGAGCGACCTTCGGAACTGGCCTTGCGCTAC
GTTTTGGAAGACGGGAAGCTGAATATGTGCCTGAGAAACCTCGTCGACTT
AAGAGAGTTTCATCGCAATAGGCGGGGCAAAGTGGACCTGGTGGATGAGC
GACCTTCGACACAAGCCAACTTGGATGCCTTCGAGAGGGGCATAGGCACC
GTCTTACGGAACGCCTGGACACACATCGAGGCCTTGCAAACTACTGACAT
ACCTCTTCTCGTCGAGTATGTCACGGGGACACAAGCCAACTTGGATGCCT
TCGAGAGGGGCATAGGCACCGTCTTACGGAACGCCTGGACACACATCGAG
GCCTTGCAAACTACTGACATACCTCTTCTCGTCGAGTATGTCACGGGGGT
GATTCGGGAGGCTGCCGAGCATCCAGAGAGAATAGAGCGCATGCGACGGA
GGGGGGATTTGTGGGATCGTCAGGAGGTGATTCGGGAGGCTGCCGAGCAT
CCAGAGAGAATAGAGCGCATGCGACGGAGGGGGGATTTGTGGGATCGTCA
GGAGGTGGTCTGCCTCAGCTACCTACGAGGACTGGTTTCATGTCTGAGCG
AATACGATGAAGGTCGTGTCATGCCGCACGTGAGATCGGCAGGCACAACC
GCCTGGCTTGGGTCGATGCTGCACGCTAACCACGAACACCTCGGGATGGA
TACCGCTACCGTAGGAGCACAGGCGCTGGCTTTCGTGTTCGCCACAGAGG
ATTTTGCCACATACCGAGTGGTCTGCCTCAGCTACCTACGAGGACTGGTT
TCATGTCTGAGCGAATACGATGAAGGTCGTGTCATGCCGCACGTGAGATC
GGCAGGCACAACCGCCTGGCTTGGGTCGATGCTGCACGCTAACCACGAAC
ACCTCGGGATGGATACCGCTACCGTAGGAGCACAGGCGCTGGCTTTCGTG
TTCGCCACAGAGGATTTTGCCACATACCGAAACGAGTATATATCCAACTG
CGACAAGGATACCTTCGCGTCCCTCAGAGCTGATTTTGTCGCCGGCCTGT
GCGAAGATCAACAGGAAAGGAAAACCCTTAGAACGAGTATATATCCAACT
GCGACAAGGATACCTTCGCGTCCCTCAGAGCTGATTTTGTCGCCGGCCTG
TGCGAAGATCAACAGGAAAGGAAAACCCTTAGACCTCTCCTCGATGTCAT
CTCCTACTGCCAACGTACCCACTCCGGGAAATAGACCTCTCCTCGATGTC
ATCTCCTACTGCCAACGTACCCACTCCGGGAAATAG
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