mRNA_H-elongata_contig133718.2393.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig133718.2393.1
Unique NamemRNA_H-elongata_contig133718.2393.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
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BLAST of mRNA_H-elongata_contig133718.2393.1 vs. uniprot
Match: D7G6T8_ECTSI (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D7G6T8_ECTSI)

HSP 1 Score: 67.8 bits (164), Expect = 3.290e-10
Identity = 30/39 (76.92%), Postives = 34/39 (87.18%), Query Frame = 1 
Query:  379 LPLLGRLFGQAANLFQVGALFGTIPTLLAGLVCSYWAWQ 495
            LP+LGRL G +ANLFQVG L GTIPTLLAG+VC YWA+Q
Sbjct:    4 LPVLGRLLGNSANLFQVGVLLGTIPTLLAGVVCFYWAYQ 42
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig133718.2393.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
D7G6T8_ECTSI3.290e-1076.92Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig133718contigH-elongata_contig133718:193..687 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Hectar predicted targeting categorysignal peptide
Exons1
Model size497
Cds size489
Stop0
Start1
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929794.1727-UTR-H-elongata_contig133718:192..1981622929794.1727-UTR-H-elongata_contig133718:192..198Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig133718 193..198 +
1691679160.072609-UTR-H-elongata_contig133718:192..1981691679160.072609-UTR-H-elongata_contig133718:192..198Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig133718 193..198 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929794.1951635-CDS-H-elongata_contig133718:198..6871622929794.1951635-CDS-H-elongata_contig133718:198..687Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig133718 199..687 +
1691679160.086422-CDS-H-elongata_contig133718:198..6871691679160.086422-CDS-H-elongata_contig133718:198..687Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig133718 199..687 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig133718.2393.1prot_H-elongata_contig133718.2393.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig133718 199..687 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig133718.2393.1

>prot_H-elongata_contig133718.2393.1 ID=prot_H-elongata_contig133718.2393.1|Name=mRNA_H-elongata_contig133718.2393.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=163bp
MRGIRLVVILCTVSKAAGLRAILLKAPIKLKNNCKQSAQARVHDDVPKRV
RKYPPAQASTQRDGSLAYSPGFQRIASIRRVFNPSTNKHGPEVVPNQRAR
RKRTWIIIDVSDGEKRLSQSAAAMLPLLGRLFGQAANLFQVGALFGTIPT
LLAGLVCSYWAWQ
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mRNA from alignment at H-elongata_contig133718:193..687+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig133718.2393.1 ID=mRNA_H-elongata_contig133718.2393.1|Name=mRNA_H-elongata_contig133718.2393.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=495bp|location=Sequence derived from alignment at H-elongata_contig133718:193..687+ (Himanthalia elongata Himel1 dioecious)
ATTAGAATGAGAGGGATAAGGCTGGTTGTAATACTTTGCACAGTCTCCAA
AGCAGCTGGTCTTCGTGCCATTTTGCTTAAAGCACCCATCAAACTAAAAA
ATAATTGCAAACAATCTGCGCAAGCCAGGGTCCATGATGATGTTCCCAAG
AGAGTCCGAAAATACCCGCCAGCGCAAGCCTCTACCCAGAGGGACGGCTC
TCTCGCATACTCTCCAGGCTTCCAACGTATTGCATCCATTCGCCGAGTAT
TTAACCCATCAACCAATAAACATGGGCCAGAGGTGGTCCCAAATCAGCGT
GCACGTCGAAAGCGTACCTGGATTATCATTGACGTGTCTGACGGGGAGAA
AAGGCTCTCTCAAAGCGCGGCGGCCATGCTCCCCCTCCTAGGCCGGCTAT
TTGGGCAGGCAGCAAACCTCTTCCAGGTCGGCGCGCTGTTCGGGACGATA
CCGACGCTTCTGGCTGGCCTCGTATGCTCCTACTGGGCATGGCAA
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Coding sequence (CDS) from alignment at H-elongata_contig133718:193..687+

>mRNA_H-elongata_contig133718.2393.1 ID=mRNA_H-elongata_contig133718.2393.1|Name=mRNA_H-elongata_contig133718.2393.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=978bp|location=Sequence derived from alignment at H-elongata_contig133718:193..687+ (Himanthalia elongata Himel1 dioecious)
ATGAGAGGGATAAGGCTGGTTGTAATACTTTGCACAGTCTCCAAAGCAGC
TGGTCTTCGTGCCATTTTGCTTAAAGCACCCATCAAACTAAAAAATAATT
GCAAACAATCTGCGCAAGCCAGGGTCCATGATGATGTTCCCAAGAGAGTC
CGAAAATACCCGCCAGCGCAAGCCTCTACCCAGAGGGACGGCTCTCTCGC
ATACTCTCCAGGCTTCCAACGTATTGCATCCATTCGCCGAGTATTTAACC
CATCAACCAATAAACATGGGCCAGAGGTGGTCCCAAATCAGCGTGCACGT
CGAAAGCGTACCTGGATTATCATTGACGTGTCTGACGGGGAGAAAAGGCT
CTCTCAAAGCGCGGCGGCCATGCTCCCCCTCCTAGGCCGGCTATTTGGGC
AGGCAGCAAACCTCTTCCAGGTCGGCGCGCTGTTCGGGACGATACCGACG
CTTCTGGCTGGCCTCGTATGCTCCTACTGGGCATGGCAAATGAGAGGGAT
AAGGCTGGTTGTAATACTTTGCACAGTCTCCAAAGCAGCTGGTCTTCGTG
CCATTTTGCTTAAAGCACCCATCAAACTAAAAAATAATTGCAAACAATCT
GCGCAAGCCAGGGTCCATGATGATGTTCCCAAGAGAGTCCGAAAATACCC
GCCAGCGCAAGCCTCTACCCAGAGGGACGGCTCTCTCGCATACTCTCCAG
GCTTCCAACGTATTGCATCCATTCGCCGAGTATTTAACCCATCAACCAAT
AAACATGGGCCAGAGGTGGTCCCAAATCAGCGTGCACGTCGAAAGCGTAC
CTGGATTATCATTGACGTGTCTGACGGGGAGAAAAGGCTCTCTCAAAGCG
CGGCGGCCATGCTCCCCCTCCTAGGCCGGCTATTTGGGCAGGCAGCAAAC
CTCTTCCAGGTCGGCGCGCTGTTCGGGACGATACCGACGCTTCTGGCTGG
CCTCGTATGCTCCTACTGGGCATGGCAA
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