mRNA_H-elongata_contig133694.2392.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig133694.2392.1
Unique NamemRNA_H-elongata_contig133694.2392.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
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BLAST of mRNA_H-elongata_contig133694.2392.1 vs. uniprot
Match: D8LI69_ECTSI (U-box domain containing protein, expressed n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LI69_ECTSI)

HSP 1 Score: 127 bits (319), Expect = 1.870e-30
Identity = 167/209 (79.90%), Postives = 176/209 (84.21%), Query Frame = 1 
Query:    1 KANLRDPQFDATLLHWAVNEGHVPTVEHLLTCGADVRLXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXASHRTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXGKGSPTDKRDDDGYVPGDSFHQSVPEATKNAILEAVKRGPASGDSVVRAATDSSELLLETLHGCRSWGELFEVRFTNTM 627
            KAN RD Q+DATLLHWAVNEGH+PTVEHLL CGADVRLXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX AS+RTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX           DG +PG +FH SVPE     I  A++RGPASGD VVRAAT SSELLLETL  CRSWGELFE R  + +
Sbjct:   30 KANARDSQYDATLLHWAVNEGHMPTVEHLLACGADVRLXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXDASNRTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXADGNIPGSTFHHSVPEEAIRDIRSAMQRGPASGDGVVRAATVSSELLLETLRACRSWGELFENRHFDVL 238
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BLAST of mRNA_H-elongata_contig133694.2392.1 vs. uniprot
Match: A0A6H5KWH5_9PHAE (Protein kinase domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KWH5_9PHAE)

HSP 1 Score: 127 bits (319), Expect = 3.410e-30
Identity = 167/209 (79.90%), Postives = 176/209 (84.21%), Query Frame = 1 
Query:    1 KANLRDPQFDATLLHWAVNEGHVPTVEHLLTCGADVRLXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXASHRTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXGKGSPTDKRDDDGYVPGDSFHQSVPEATKNAILEAVKRGPASGDSVVRAATDSSELLLETLHGCRSWGELFEVRFTNTM 627
            KAN RD Q+DATLLHWAVNEGH+PTVEHLL CGADVRLXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX AS+RTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX           DG +PG +FH SVPE     I  A++RGPASGD VVRAAT SSELLLETL  CRSWGELFE R  + +
Sbjct:   30 KANARDSQYDATLLHWAVNEGHMPTVEHLLACGADVRLXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXDASNRTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXADGNIPGSTFHHSVPEEAIRDIRSALQRGPASGDGVVRAATVSSELLLETLRACRSWGELFENRHFDVL 238
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig133694.2392.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
D8LI69_ECTSI1.870e-3079.90U-box domain containing protein, expressed n=1 Tax... [more]
A0A6H5KWH5_9PHAE3.410e-3079.90Protein kinase domain-containing protein n=1 Tax=E... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig133694contigH-elongata_contig133694:173..1664 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score129.4
Seed ortholog evalue2e-27
Seed eggNOG ortholog2880.D8LI69
EggNOG free text desc.response to abiotic stimulus
EggNOG OGsCOG0515@1,COG0666@1,KOG0504@2759,KOG1187@2759
COG Functional cat.G
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Hectar predicted targeting categoryother localisation
Exons4
Model size642
Cds size642
Stop1
Start0
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig133694.2392.1prot_H-elongata_contig133694.2392.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig133694 173..1664 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929794.0738842-CDS-H-elongata_contig133694:172..3421622929794.0738842-CDS-H-elongata_contig133694:172..342Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig133694 173..342 -
1691679160.0284536-CDS-H-elongata_contig133694:172..3421691679160.0284536-CDS-H-elongata_contig133694:172..342Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig133694 173..342 -
1622929794.0928078-CDS-H-elongata_contig133694:525..7701622929794.0928078-CDS-H-elongata_contig133694:525..770Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig133694 526..770 -
1691679160.039936-CDS-H-elongata_contig133694:525..7701691679160.039936-CDS-H-elongata_contig133694:525..770Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig133694 526..770 -
1622929794.1069148-CDS-H-elongata_contig133694:1034..11331622929794.1069148-CDS-H-elongata_contig133694:1034..1133Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig133694 1035..1133 -
1691679160.0530357-CDS-H-elongata_contig133694:1034..11331691679160.0530357-CDS-H-elongata_contig133694:1034..1133Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig133694 1035..1133 -
1622929794.1179335-CDS-H-elongata_contig133694:1536..16641622929794.1179335-CDS-H-elongata_contig133694:1536..1664Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig133694 1537..1664 -
1691679160.0635834-CDS-H-elongata_contig133694:1536..16641691679160.0635834-CDS-H-elongata_contig133694:1536..1664Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig133694 1537..1664 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig133694.2392.1

>prot_H-elongata_contig133694.2392.1 ID=prot_H-elongata_contig133694.2392.1|Name=mRNA_H-elongata_contig133694.2392.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=214bp
KANLRDPQFDATLLHWAVNEGHVPTVEHLLTCGADVRLRDGKHSATPLHW
AAAKGHAFVVRLLMMKESDVNSRDASHRTPLHWAAGNGQLGVIRELLFWG
ARVECTDSWRKVPLHWAAFRGHVASVEELVGKGSPTDKRDDDGYVPGDSF
HQSVPEATKNAILEAVKRGPASGDSVVRAATDSSELLLETLHGCRSWGEL
FEVRFTNTMPCFL*
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mRNA from alignment at H-elongata_contig133694:173..1664-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig133694.2392.1 ID=mRNA_H-elongata_contig133694.2392.1|Name=mRNA_H-elongata_contig133694.2392.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=1492bp|location=Sequence derived from alignment at H-elongata_contig133694:173..1664- (Himanthalia elongata Himel1 dioecious)
AAGGCCAACCTGCGCGACCCGCAGTTCGACGCAACGCTCCTCCACTGGGC
AGTGAACGAGGGGCACGTGCCCACCGTCGAGCACCTGCTGACGTGCGGCG
CGGACGTTCGGTTGAGAGACGGAAAACAGTTGAGAACGCACACCACACGC
AACTAACCACGACGGCAGCGTTCACGACGAATCCATTATGGTAGAACGGC
GCGGCGAATCGAACCGAGCCGAGTGCCGTGGTACGGGGGCGCGAGAGAGG
TTTGGTTGCGTGGTGACATCTCTCGATGAGATAACGGCGGAAGCTAAAAA
AAATAGTCTATAGGACCCATTTATTGCCCCCTTTGCCCTCCCCCCGACCA
CACTTCGAACTCCATGTGGTTTTCAAGAGATTTGTCTCGATCCAGACGGC
GTAAAGCGCGTAAGGTCATGCCACGGCGCCATGCCAGCCAGCTCCTATCG
AAGCAGTACCCCCTACCTGCCCGTTGCTTGCGTTCGTCGCTTCCAACCCC
TTACGCCTACCGCGCTCGTGTGGCTTCGTAGTTCCGCCACCCCGCTCCAC
TGGGCCGCGGCAAAGGGTCACGCGTTCGTGGTGCGGCTACTAATGATGAA
GGAGTCGGACGTGAACAGCAGGGACGCCTCGTGAGTGGAATGGGGGAAGG
AATGAGGTTTTGTTTGAGATTAAGGGTAAGGGTTGGGGTTGCGATGGTTT
GTGGCAATACATTAACTCGCGAGAACAGCAACAGCAGCAGCAGCAGCAAC
AGCAAGAGTGCCACTATTGCAGTAGATAGTGCTTTACCTCGTTCATGTGT
ACCTAGCTTTCAGTTGCCTTGAATGATCCTCCCCCCCCTTCTTCCCCTTC
CACTCTCCTTTCCATCATGCCCCCGTCGTCGCTCTTGCGAGCAGCCACCG
TACCCCGCTCCACTGGGCGGCCGGCAACGGTCAGCTGGGAGTGATTCGCG
AGCTGCTGTTTTGGGGAGCACGGGTTGAGTGCACGGACTCTTGGAGGAAA
GTTCCCCTGCACTGGGCCGCCTTTAGGGGGCACGTGGCGAGCGTGGAGGA
GCTAGTCGGCAAGGGGTCGCCGACCGATAAGCGCGACGACGATGGCTACG
TCCCCGGCGACAGTTTTCACCAGAGCGTGCCAGAGGCGAGTGTGTATCGT
TTTTGTTTTTTTTTGGGCGTGTATTATGCAATGTGAGAATTGTGTGTGTA
GTCCAATGTATCTAATGTGTGGGTGTTGGGTATTAATTATATTGCACATA
AATGTTTGGGTGTGTGTCCCCCCTCTGGCGGGGCGCTTGTCTGTCTGTAA
ATTCGCGAACGCCGGCAGGAAGCCAAAAACGCTATCCTCGAGGCCGTGAA
GCGCGGTCCCGCTTCCGGGGATAGCGTGGTGAGAGCGGCGACGGACTCCT
CGGAGCTTTTACTGGAAACCCTTCATGGATGTCGATCCTGGGGGGAGCTC
TTCGAGGTAAGGTTTACCAACACGATGCCTTGCTTTTTGTAA
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Coding sequence (CDS) from alignment at H-elongata_contig133694:173..1664-

>mRNA_H-elongata_contig133694.2392.1 ID=mRNA_H-elongata_contig133694.2392.1|Name=mRNA_H-elongata_contig133694.2392.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=1284bp|location=Sequence derived from alignment at H-elongata_contig133694:173..1664- (Himanthalia elongata Himel1 dioecious)
AAGGCCAACCTGCGCGACCCGCAGTTCGACGCAACGCTCCTCCACTGGGC
AGTGAACGAGGGGCACGTGCCCACCGTCGAGCACCTGCTGACGTGCGGCG
CGGACGTTCGGTTGAGAGACGGAAAACAAAGGCCAACCTGCGCGACCCGC
AGTTCGACGCAACGCTCCTCCACTGGGCAGTGAACGAGGGGCACGTGCCC
ACCGTCGAGCACCTGCTGACGTGCGGCGCGGACGTTCGGTTGAGAGACGG
AAAACATTCCGCCACCCCGCTCCACTGGGCCGCGGCAAAGGGTCACGCGT
TCGTGGTGCGGCTACTAATGATGAAGGAGTCGGACGTGAACAGCAGGGAC
GCCTCTTCCGCCACCCCGCTCCACTGGGCCGCGGCAAAGGGTCACGCGTT
CGTGGTGCGGCTACTAATGATGAAGGAGTCGGACGTGAACAGCAGGGACG
CCTCCCACCGTACCCCGCTCCACTGGGCGGCCGGCAACGGTCAGCTGGGA
GTGATTCGCGAGCTGCTGTTTTGGGGAGCACGGGTTGAGTGCACGGACTC
TTGGAGGAAAGTTCCCCTGCACTGGGCCGCCTTTAGGGGGCACGTGGCGA
GCGTGGAGGAGCTAGTCGGCAAGGGGTCGCCGACCGATAAGCGCGACGAC
GATGGCTACGTCCCCGGCGACAGTTTTCACCAGAGCGTGCCAGAGGCGAC
CACCGTACCCCGCTCCACTGGGCGGCCGGCAACGGTCAGCTGGGAGTGAT
TCGCGAGCTGCTGTTTTGGGGAGCACGGGTTGAGTGCACGGACTCTTGGA
GGAAAGTTCCCCTGCACTGGGCCGCCTTTAGGGGGCACGTGGCGAGCGTG
GAGGAGCTAGTCGGCAAGGGGTCGCCGACCGATAAGCGCGACGACGATGG
CTACGTCCCCGGCGACAGTTTTCACCAGAGCGTGCCAGAGGCGACCAAAA
ACGCTATCCTCGAGGCCGTGAAGCGCGGTCCCGCTTCCGGGGATAGCGTG
GTGAGAGCGGCGACGGACTCCTCGGAGCTTTTACTGGAAACCCTTCATGG
ATGTCGATCCTGGGGGGAGCTCTTCGAGGTAAGGTTTACCAACACGATGC
CTTGCTTTTTGTAACCAAAAACGCTATCCTCGAGGCCGTGAAGCGCGGTC
CCGCTTCCGGGGATAGCGTGGTGAGAGCGGCGACGGACTCCTCGGAGCTT
TTACTGGAAACCCTTCATGGATGTCGATCCTGGGGGGAGCTCTTCGAGGT
AAGGTTTACCAACACGATGCCTTGCTTTTTGTAA
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